Class ID,Preferred Label,Synonyms,Definitions,Obsolete,CUI,Semantic Types,Parents,Citation,Created in,deprecation_candidate,deprecation_comment,Documentation,Example,File extension,has format,has function,has identifier,has input,has output,has topic,http://data.bioontology.org/metadata/prefixIRI,http://edamontology.org/comment_handle,http://edamontology.org/next_id,http://edamontology.org/ontology_used,http://purl.obolibrary.org/obo/date,http://purl.obolibrary.org/obo/default-relationship-id-prefix,http://purl.obolibrary.org/obo/edam#data,http://purl.obolibrary.org/obo/edam#edam,http://purl.obolibrary.org/obo/edam#events,http://purl.obolibrary.org/obo/edam#formats,http://purl.obolibrary.org/obo/edam#identifiers,http://purl.obolibrary.org/obo/edam#obsolete,http://purl.obolibrary.org/obo/edam#operations,http://purl.obolibrary.org/obo/edam#topics,http://purl.obolibrary.org/obo/idspace,http://purl.obolibrary.org/obo/is_anti_symmetric,http://purl.obolibrary.org/obo/is_metadata_tag,http://purl.obolibrary.org/obo/is_reflexive,http://purl.obolibrary.org/obo/is_symmetric,http://purl.obolibrary.org/obo/namespace,http://purl.obolibrary.org/obo/remark,http://purl.obolibrary.org/obo/transitive_over,http://purl.org/dc/elements/1.1/creator,http://purl.org/dc/elements/1.1/format,http://purl.org/dc/elements/1.1/title,http://usefulinc.com/ns/doap#Version,http://www.geneontology.org/formats/oboInOwl#comment,http://www.geneontology.org/formats/oboInOwl#consider,http://www.geneontology.org/formats/oboInOwl#hasAlternativeId,http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym,http://www.geneontology.org/formats/oboInOwl#hasDbXRef,http://www.geneontology.org/formats/oboInOwl#hasDbXref,http://www.geneontology.org/formats/oboInOwl#hasDefinition,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym,http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym,http://www.geneontology.org/formats/oboInOwl#hasSubset,http://www.geneontology.org/formats/oboInOwl#inSubset,http://www.geneontology.org/formats/oboInOwl#isCyclic,http://www.geneontology.org/formats/oboInOwl#replacedBy,http://www.geneontology.org/formats/oboInOwl#savedBy,http://www.geneontology.org/formats/oboInOwl#SubsetProperty,http://xmlns.com/foaf/0.1/page,Information standard,is format of,is function of,is identifier of,is input of,is output of,is topic of,isdebtag,Media type,Obsolete since,old parent,Organisation,refactor_candidate,refactor_comment,Regular expression,thematic_editor,UI tip
http://edamontology.org/data_0005,Resource type,,A type of computational resource used in bioinformatics.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0005,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,A type of computational resource used in bioinformatics.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0006,Data,Data record|Data set|Datum,"Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.",FALSE,,,http://www.w3.org/2002/07/owl#Thing,,beta12orEarlier,,,,,,,,,,,,data_0006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.",Data record,Data set|Datum,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/data_0007,Tool,,"A bioinformatics package or tool, e.g. a standalone application or web service.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A bioinformatics package or tool, e.g. a standalone application or web service.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0958,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0581,Database,,"A digital data archive typically based around a relational model but sometimes using an object-oriented, tree or graph-based model.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0581,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A digital data archive typically based around a relational model but sometimes using an object-oriented, tree or graph-based model.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0957,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0582,Ontology,Ontologies,"An ontology of biological or bioinformatics concepts and relations, a controlled vocabulary, structured glossary etc.",FALSE,,,http://edamontology.org/data_2353,,beta12orEarlier,,,,,,,,,,,,data_0582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An ontology of biological or bioinformatics concepts and relations, a controlled vocabulary, structured glossary etc.",Ontologies,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0583,Directory metadata,,A directory on disk from which files are read.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0583,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,A directory on disk from which files are read.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0831,MeSH vocabulary,,Controlled vocabulary from National Library of Medicine. The MeSH thesaurus is used to index articles in biomedical journals for the Medline/PubMED databases.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0831,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0582,,,,,Controlled vocabulary from National Library of Medicine. The MeSH thesaurus is used to index articles in biomedical journals for the Medline/PubMED databases.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0832,HGNC vocabulary,,Controlled vocabulary for gene names (symbols) from HUGO Gene Nomenclature Committee.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0832,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0582,,,,,Controlled vocabulary for gene names (symbols) from HUGO Gene Nomenclature Committee.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0835,UMLS vocabulary,,Compendium of controlled vocabularies for the biomedical domain (Unified Medical Language System).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0835,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0582,,,,,Compendium of controlled vocabularies for the biomedical domain (Unified Medical Language System).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0842,Identifier,ID|http://purl.org/dc/elements/1.1/identifier,"A text token, number or something else which identifies an entity, but which may not be persistent (stable) or unique (the same identifier may identify multiple things).",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0842,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A text token, number or something else which identifies an entity, but which may not be persistent (stable) or unique (the same identifier may identify multiple things).",ID,http://purl.org/dc/elements/1.1/identifier,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0843,Database entry,,An entry (retrievable via URL) from a biological database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0843,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0006,,,,,An entry (retrievable via URL) from a biological database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0844,Molecular mass,,Mass of a molecule.,FALSE,,,http://edamontology.org/data_2050,,beta12orEarlier,,,,,,,,,,,,data_0844,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mass of a molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0845,Molecular charge,,Net charge of a molecule.,FALSE,,,http://edamontology.org/data_2050,,beta12orEarlier,,,,,,,,,,,,data_0845,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDBML:pdbx_formal_charge,Net charge of a molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0846,Chemical formula,Chemical structure specification,A specification of a chemical structure.,FALSE,,,http://edamontology.org/data_2050,,beta12orEarlier,,,,,,,,,,,,data_0846,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A specification of a chemical structure.,Chemical structure specification,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0847,QSAR descriptor,,A QSAR quantitative descriptor (name-value pair) of chemical structure.|QSAR descriptors have numeric values that quantify chemical information encoded in a symbolic representation of a molecule. They are used in quantitative structure activity relationship (QSAR) applications. Many subtypes of individual descriptors (not included in EDAM) cover various types of protein properties.,FALSE,,,http://edamontology.org/data_2050,,beta12orEarlier,,,,,,,,,,,,data_0847,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR quantitative descriptor (name-value pair) of chemical structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0848,Raw sequence,,"A raw molecular sequence (string of characters) which might include ambiguity, unknown positions and non-sequence characters.|Non-sequence characters may be used for example for gaps and translation stop.",FALSE,,,http://edamontology.org/data_2044,,beta12orEarlier,,,,,,,,,,,,data_0848,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A raw molecular sequence (string of characters) which might include ambiguity, unknown positions and non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0849,Sequence record,,A molecular sequence and associated metadata.,FALSE,,,http://edamontology.org/data_2044,,beta12orEarlier,,,,,,,,,,,,data_0849,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SO:2000061,A molecular sequence and associated metadata.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0850,Sequence set,SO:0001260,A collection of multiple molecular sequences and associated metadata that do not (typically) correspond to molecular sequence database records or entries and which (typically) are derived from some analytical method.|This concept may be used for arbitrary sequence sets and associated data arising from processing.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0850,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A collection of multiple molecular sequences and associated metadata that do not (typically) correspond to molecular sequence database records or entries and which (typically) are derived from some analytical method.,,,SO:0001260,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0851,Sequence mask character,,A character used to replace (mask) other characters in a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0851,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A character used to replace (mask) other characters in a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0852,Sequence mask type,,"A label (text token) describing the type of sequence masking to perform.|Sequence masking is where specific characters or positions in a molecular sequence are masked (replaced) with an another (mask character). The mask type indicates what is masked, for example regions that are not of interest or which are information-poor including acidic protein regions, basic protein regions, proline-rich regions, low compositional complexity regions, short-periodicity internal repeats, simple repeats and low complexity regions. Masked sequences are used in database search to eliminate statistically significant but biologically uninteresting hits.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0852,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing the type of sequence masking to perform.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0853,DNA sense specification,Strand|DNA strand specification,"The strand of a DNA sequence (forward or reverse).|The forward or 'top' strand might specify a sequence is to be used as given, the reverse or 'bottom' strand specifying the reverse complement of the sequence is to be used.",FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_0853,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The strand of a DNA sequence (forward or reverse).,Strand|DNA strand specification,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0854,Sequence length specification,,A specification of sequence length(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0854,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,A specification of sequence length(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0855,Sequence metadata,,"Basic or general information concerning molecular sequences.|This is used for such things as a report including the sequence identifier, type and length.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0855,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2955,,,,,Basic or general information concerning molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0856,Sequence feature source,,"How the annotation of a sequence feature (for example in EMBL or Swiss-Prot) was derived.|This might be the name and version of a software tool, the name of a database, or 'curated' to indicate a manual annotation (made by a human).",FALSE,,,http://edamontology.org/data_2914,,beta12orEarlier,,,,,,,,,,,,data_0856,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,How the annotation of a sequence feature (for example in EMBL or Swiss-Prot) was derived.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0857,Sequence search results,Sequence database search results||Sequence search hits|Database hits (sequence)|Sequence database hits,"A report of sequence hits and associated data from searching a database of sequences (for example a BLAST search). This will typically include a list of scores (often with statistical evaluation) and a set of alignments for the hits.|The score list includes the alignment score, percentage of the query sequence matched, length of the database sequence entry in this alignment, identifier of the database sequence entry, excerpt of the database sequence entry description etc.",FALSE,,,http://edamontology.org/data_2080,,beta12orEarlier,,,,,,,,,,,,data_0857,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report of sequence hits and associated data from searching a database of sequences (for example a BLAST search). This will typically include a list of scores (often with statistical evaluation) and a set of alignments for the hits.,Sequence database search results||Sequence search hits|Database hits (sequence)|Sequence database hits,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0858,Sequence signature matches,Sequence motif matches|Sequence profile matches|Protein secondary database search results|Search results (protein secondary database),"Report on the location of matches in one or more sequences to profiles, motifs (conserved or functional patterns) or other signatures.|This ncluding reports of hits from a search of a protein secondary or domain database.",FALSE,,,http://edamontology.org/data_0860,,beta12orEarlier,,,,,,,,,,,,data_0858,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on the location of matches in one or more sequences to profiles, motifs (conserved or functional patterns) or other signatures.",Sequence motif matches|Sequence profile matches,Protein secondary database search results|Search results (protein secondary database),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0859,Sequence signature model,,Data files used by motif or profile methods.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0859,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0950,,,,,Data files used by motif or profile methods.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0860,Sequence signature data,,"Data concering concerning specific or conserved pattern in molecular sequences and the classifiers used for their identification, including sequence motifs, profiles or other diagnostic element.|This can include metadata about a motif or sequence profile such as its name, length, technical details about the profile construction, and so on.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0860,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concering concerning specific or conserved pattern in molecular sequences and the classifiers used for their identification, including sequence motifs, profiles or other diagnostic element.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0861,Sequence alignment (words),Sequence word alignment,Alignment of exact matches between subsequences (words) within two or more molecular sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0861,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0863,,,,,Alignment of exact matches between subsequences (words) within two or more molecular sequences.,Sequence word alignment,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0862,Dotplot,,A dotplot of sequence similarities identified from word-matching or character comparison.,FALSE,,,http://edamontology.org/data_0867,,beta12orEarlier,,,,,,,,,,,,data_0862,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A dotplot of sequence similarities identified from word-matching or character comparison.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0863,Sequence alignment,,Alignment of multiple molecular sequences.,FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0863,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of multiple molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0864,Sequence alignment parameter,,Some simple value controlling a sequence alignment (or similar 'match') operation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0864,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some simple value controlling a sequence alignment (or similar 'match') operation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0865,Sequence similarity score,,A value representing molecular sequence similarity.,FALSE,,,http://edamontology.org/data_1772,,beta12orEarlier,,,,,,,,,,,,data_0865,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A value representing molecular sequence similarity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0866,Sequence alignment metadata,,"Report of general information on a sequence alignment, typically include a description, sequence identifiers and alignment score.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0866,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,"Report of general information on a sequence alignment, typically include a description, sequence identifiers and alignment score.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0867,Sequence alignment report,,"An informative report of molecular sequence alignment-derived data or metadata.|Use this for any computer-generated reports on sequence alignments, and for general information (metadata) on a sequence alignment, such as a description, sequence identifiers and alignment score.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_0867,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report of molecular sequence alignment-derived data or metadata.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0868,Profile-profile alignment,Sequence profile alignment,A profile-profile alignment (each profile typically representing a sequence alignment).,FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0868,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A profile-profile alignment (each profile typically representing a sequence alignment).,Sequence profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0869,Sequence-profile alignment,,"Alignment of one or more molecular sequence(s) to one or more sequence profile(s) (each profile typically representing a sequence alignment).|Data associated with the alignment might also be included, e.g. ranked list of best-scoring sequences and a graphical representation of scores.",FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0869,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of one or more molecular sequence(s) to one or more sequence profile(s) (each profile typically representing a sequence alignment).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0870,Sequence distance matrix,Phylogenetic distance matrix,"A matrix of estimated evolutionary distance between molecular sequences, such as is suitable for phylogenetic tree calculation.|Methods might perform character compatibility analysis or identify patterns of similarity in an alignment or data matrix.",FALSE,,,http://edamontology.org/data_2855,,beta12orEarlier,,,,,,,,,,,,data_0870,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:phylogenetic_distance_matrix,"A matrix of estimated evolutionary distance between molecular sequences, such as is suitable for phylogenetic tree calculation.",Phylogenetic distance matrix,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0871,Phylogenetic character data,,"Basic character data from which a phylogenetic tree may be generated.|As defined, this concept would also include molecular sequences, microsatellites, polymorphisms (RAPDs, RFLPs, or AFLPs), restriction sites and fragments",FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_0871,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Basic character data from which a phylogenetic tree may be generated.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0872,Phylogenetic tree,Phylogeny,"The raw data (not just an image) from which a phylogenetic tree is directly generated or plotted, such as topology, lengths (in time or in expected amounts of variance) and a confidence interval for each length.|A phylogenetic tree is usually constructed from a set of sequences from which an alignment (or data matrix) is calculated. See also 'Phylogenetic tree image'.",FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_0872,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Tree|Moby:myTree|Moby:phylogenetic_tree,"The raw data (not just an image) from which a phylogenetic tree is directly generated or plotted, such as topology, lengths (in time or in expected amounts of variance) and a confidence interval for each length.",Phylogeny,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0874,Comparison matrix,Substitution matrix,"Matrix of integer or floating point numbers for amino acid or nucleotide sequence comparison.|The comparison matrix might include matrix name, optional comment, height and width (or size) of matrix, an index row/column (of characters) and data rows/columns (of integers or floats).",FALSE,,,http://edamontology.org/data_2082,,beta12orEarlier,,,,,,,,,,,,data_0874,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Matrix of integer or floating point numbers for amino acid or nucleotide sequence comparison.,Substitution matrix,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0875,Protein topology,,Predicted or actual protein topology represented as a string of protein secondary structure elements.|The location and size of the secondary structure elements and intervening loop regions is usually indicated.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0875,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predicted or actual protein topology represented as a string of protein secondary structure elements.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0876,Protein features report (secondary structure),,Secondary structure (predicted or real) of a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0876,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Secondary structure (predicted or real) of a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0877,Protein features report (super-secondary),,"Super-secondary structure of protein sequence(s).|Super-secondary structures include leucine zippers, coiled coils, Helix-Turn-Helix etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0877,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Super-secondary structure of protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0878,Secondary structure alignment (protein),,Alignment of the (1D representations of) secondary structure of two or more proteins.,FALSE,,,http://edamontology.org/data_2366|http://edamontology.org/data_3154,,beta12orEarlier,,,,,,,,,,,,data_0878,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of the (1D representations of) secondary structure of two or more proteins.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0879,Secondary structure alignment metadata (protein),,An informative report on protein secondary structure alignment-derived data or metadata.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0879,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,An informative report on protein secondary structure alignment-derived data or metadata.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0880,RNA secondary structure,Secondary structure (RNA),"An informative report of secondary structure (predicted or real) of an RNA molecule.|This includes thermodynamically stable or evolutionarily conserved structures such as knots, pseudoknots etc.",FALSE,,,http://edamontology.org/data_1465,,beta12orEarlier,,,,,,,,,,,,data_0880,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:RNAStructML,An informative report of secondary structure (predicted or real) of an RNA molecule.,Secondary structure (RNA),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0881,Secondary structure alignment (RNA),,Alignment of the (1D representations of) secondary structure of two or more RNA molecules.,FALSE,,,http://edamontology.org/data_2366,,beta12orEarlier,,,,,,,,,,,,data_0881,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:RNAStructAlignmentML,Alignment of the (1D representations of) secondary structure of two or more RNA molecules.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0882,Secondary structure alignment metadata (RNA),,An informative report of RNA secondary structure alignment-derived data or metadata.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0882,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,An informative report of RNA secondary structure alignment-derived data or metadata.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0883,Structure,Coordinate model|Structure data,3D coordinate and associated data for a macromolecular tertiary (3D) structure or part of a structure.|The coordinate data may be predicted or real.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0883,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a macromolecular tertiary (3D) structure or part of a structure.,Coordinate model|Structure data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0884,Tertiary structure record,,An entry from a molecular tertiary (3D) structure database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0884,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0883,,,,,An entry from a molecular tertiary (3D) structure database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0885,Structure database search results,,Results (hits) from searching a database of tertiary structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0885,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2080,,,,,Results (hits) from searching a database of tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0886,Structure alignment,,"Alignment (superimposition) of molecular tertiary (3D) structures.|A tertiary structure alignment will include the untransformed coordinates of one macromolecule, followed by the second (or subsequent) structure(s) with all the coordinates transformed (by rotation / translation) to give a superposition.",FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0886,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment (superimposition) of molecular tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0887,Structure alignment report,,"An informative report of molecular tertiary structure alignment-derived data.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_0887,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report of molecular tertiary structure alignment-derived data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0888,Structure similarity score,,"A value representing molecular structure similarity, measured from structure alignment or some other type of structure comparison.",FALSE,,,http://edamontology.org/data_1772,,beta12orEarlier,,,,,,,,,,,,data_0888,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A value representing molecular structure similarity, measured from structure alignment or some other type of structure comparison.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0889,Structural profile,3D profile|Structural (3D) profile,Some type of structural (3D) profile or template (representing a structure or structure alignment).,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0889,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some type of structural (3D) profile or template (representing a structure or structure alignment).,3D profile|Structural (3D) profile,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0890,Structural (3D) profile alignment,Structural profile alignment,A 3D profile-3D profile alignment (each profile representing structures or a structure alignment).,FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0890,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A 3D profile-3D profile alignment (each profile representing structures or a structure alignment).,Structural profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0891,Sequence-3D profile alignment,Sequence-structural profile alignment,An alignment of a sequence to a 3D profile (representing structures or a structure alignment).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0891,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0893,,,,,An alignment of a sequence to a 3D profile (representing structures or a structure alignment).,Sequence-structural profile alignment,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0892,Protein sequence-structure scoring matrix,,Matrix of values used for scoring sequence-structure compatibility.,FALSE,,,http://edamontology.org/data_2082,,beta12orEarlier,,,,,,,,,,,,data_0892,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Matrix of values used for scoring sequence-structure compatibility.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0893,Sequence-structure alignment,,An alignment of molecular sequence to structure (from threading sequence(s) through 3D structure or representation of structure(s)).,FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_0893,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An alignment of molecular sequence to structure (from threading sequence(s) through 3D structure or representation of structure(s)).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0894,Amino acid annotation,,An informative report about a specific amino acid.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0894,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report about a specific amino acid.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_0895,Peptide annotation,,An informative report about a specific peptide.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0895,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report about a specific peptide.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_0896,Protein report,Gene product annotation,"An informative human-readable report about one or more specific protein molecules or protein structural domains, derived from analysis of primary (sequence or structural) data.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_0896,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative human-readable report about one or more specific protein molecules or protein structural domains, derived from analysis of primary (sequence or structural) data.",Gene product annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0897,Protein property,Protein physicochemical property|Protein properties|Protein sequence statistics,"A report of primarily non-positional data describing intrinsic physical, chemical or other properties of a protein molecule or model.|The report may be based on analysis of nucleic acid sequence or structural data. This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_0897,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report of primarily non-positional data describing intrinsic physical, chemical or other properties of a protein molecule or model.",Protein physicochemical property|Protein properties,Protein sequence statistics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0899,Protein structural motifs and surfaces,,3D structural motifs in a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0899,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D structural motifs in a protein.,,,,,,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0900,Protein domain classification,,Data concerning the classification of the sequences and/or structures of protein structural domain(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0900,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Data concerning the classification of the sequences and/or structures of protein structural domain(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0901,Protein features report (domains),,structural domains or 3D folds in a protein or polypeptide chain.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0901,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,structural domains or 3D folds in a protein or polypeptide chain.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0902,Protein architecture report,,An informative report on architecture (spatial arrangement of secondary structure) of a protein structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0902,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1537,,,,,An informative report on architecture (spatial arrangement of secondary structure) of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_0903,Protein folding report,,"A report on an analysis or model of protein folding properties, folding pathways, residues or sites that are key to protein folding, nucleation or stabilisation centers etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0903,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on an analysis or model of protein folding properties, folding pathways, residues or sites that are key to protein folding, nucleation or stabilisation centers etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1537,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0904,Protein features (mutation),,"Data on the effect of (typically point) mutation on protein folding, stability, structure and function.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0904,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,"Data on the effect of (typically point) mutation on protein folding, stability, structure and function.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_0905,Protein interaction raw data,,"Protein-protein interaction data from for example yeast two-hybrid analysis, protein microarrays, immunoaffinity chromatography followed by mass spectrometry, phage display etc.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",FALSE,,,http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_0905,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein-protein interaction data from for example yeast two-hybrid analysis, protein microarrays, immunoaffinity chromatography followed by mass spectrometry, phage display etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0906,Protein interaction report,Protein interaction record|Protein report (interaction)|Protein non-covalent interactions report|Atom interaction data|Residue interaction data,"An informative report on interactions (predicted or known) within or between a protein, structural domain or part of a protein. This includes intra- and inter-residue contacts and distances, as well as interactions with other proteins and non-protein entities such as nucleic acid, metal atoms, water, ions etc. 

 
",FALSE,,,http://edamontology.org/data_1537,,beta12orEarlier,,,,,,,,,,,,data_0906,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report on interactions (predicted or known) within or between a protein, structural domain or part of a protein. This includes intra- and inter-residue contacts and distances, as well as interactions with other proteins and non-protein entities such as nucleic acid, metal atoms, water, ions etc. 

 
",Protein interaction record|Protein report (interaction),Protein non-covalent interactions report|Atom interaction data|Residue interaction data,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0907,Protein family report,Protein classification data|Protein family annotation,An informative report on a specific protein family or other classification or group of protein sequences or structures.,FALSE,,,http://edamontology.org/data_0896,,beta12orEarlier,,,,,,,,,,,,data_0907,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein classification data,,,An informative report on a specific protein family or other classification or group of protein sequences or structures.,Protein family annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0909,Vmax,,The maximum initial velocity or rate of a reaction. It is the limiting velocity as substrate concentrations get very large.,FALSE,,,http://edamontology.org/data_2024,,beta12orEarlier,,,,,,,,,,,,data_0909,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The maximum initial velocity or rate of a reaction. It is the limiting velocity as substrate concentrations get very large.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0910,Km,,Km is the concentration (usually in Molar units) of substrate that leads to half-maximal velocity of an enzyme-catalysed reaction.,FALSE,,,http://edamontology.org/data_2024,,beta12orEarlier,,,,,,,,,,,,data_0910,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Km is the concentration (usually in Molar units) of substrate that leads to half-maximal velocity of an enzyme-catalysed reaction.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0911,Nucleotide base annotation,,An informative report about a specific nucleotide base.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0911,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report about a specific nucleotide base.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_0912,Nucleic acid property,Nucleic acid physicochemical property|GC-content,"A report of primarily non-positional data describing intrinsic physical, chemical or other properties of a nucleic acid molecule.|The report may be based on analysis of nucleic acid sequence or structural data. This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_0912,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report of primarily non-positional data describing intrinsic physical, chemical or other properties of a nucleic acid molecule.",Nucleic acid physicochemical property,GC-content,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0914,Codon usage data,,"Data derived from analysis of codon usage (typically a codon usage table) of DNA sequences.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data derived from analysis of codon usage (typically a codon usage table) of DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0916,Gene report,Gene annotation|Gene and transcript structure (report)|Gene function (report)|Gene structure (repot)|Nucleic acid features (gene and transcript structure)|Gene features report,"A report on predicted or actual gene structure, regions which make an RNA product and features such as promoters, coding regions, splice sites etc.|This includes any report on a particular locus or gene.  This might include the gene name, description, summary and so on. It can include details about the function of a gene, such as its encoded protein or a functional classification of the gene sequence along according to the encoded protein(s).",FALSE,,,http://edamontology.org/data_1276,,beta12orEarlier,,,,,,,,,,,,data_0916,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:Human_Readable_Description|Moby:gene|Moby:GeneInfo,"A report on predicted or actual gene structure, regions which make an RNA product and features such as promoters, coding regions, splice sites etc.",Gene annotation|Gene and transcript structure (report)|Gene function (report)|Gene structure (repot)|Nucleic acid features (gene and transcript structure)|Gene features report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0917,Gene classification,,A report on the classification of nucleic acid / gene sequences according to the functional classification of their gene products.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0917,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,A report on the classification of nucleic acid / gene sequences according to the functional classification of their gene products.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0918,DNA variation,,"stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0918,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0919,Chromosome report,,"An informative report on a specific chromosome.|This includes basic information. e.g. chromosome number, length, karyotype features, chromosome sequence etc.",FALSE,,,http://edamontology.org/data_2084,,beta12orEarlier,,,,,,,,,,,,data_0919,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a specific chromosome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0920,Genotype/phenotype report,Genotype/phenotype annotation,"An informative report on the set of genes (or allelic forms) present in an individual, organism or cell and associated with a specific physical characteristic, or a report concerning an organisms traits and phenotypes.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_0920,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report on the set of genes (or allelic forms) present in an individual, organism or cell and associated with a specific physical characteristic, or a report concerning an organisms traits and phenotypes.",Genotype/phenotype annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0922,Nucleic acid features report (primers),,PCR primers and hybridisation oligos in a nucleic acid sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0922,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PCR primers and hybridisation oligos in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0923,PCR experiment report,,"PCR experiments, e.g. quantitative real-time PCR.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0923,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"PCR experiments, e.g. quantitative real-time PCR.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0924,Sequence trace,,"Fluorescence trace data generated by an automated DNA sequencer, which can be interprted as a molecular sequence (reads), given associated sequencing metadata such as base-call quality scores.|This is the raw data produced by a DNA sequencing machine.",FALSE,,,http://edamontology.org/data_1234|http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_0924,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Fluorescence trace data generated by an automated DNA sequencer, which can be interprted as a molecular sequence (reads), given associated sequencing metadata such as base-call quality scores.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0925,Sequence assembly,Contigs|SO:0000353|SO:0001248,"An assembly of fragments of a (typically genomic) DNA sequence.|Typically, an assembly is a collection of contigs (for example ESTs and genomic DNA fragments) that are ordered, aligned and merged. Annotation of the assembled sequence might be included.",FALSE,,,http://edamontology.org/data_1234,,beta12orEarlier,,,,,,,,,,,,data_0925,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An assembly of fragments of a (typically genomic) DNA sequence.,Contigs|SO:0000353,SO:0001248,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0926,Radiation Hybrid (RH) scores,,Radiation hybrid scores (RH) scores for one or more markers.|Radiation Hybrid (RH) scores are used in Radiation Hybrid mapping.,FALSE,,,http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_0926,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Radiation hybrid scores (RH) scores for one or more markers.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0927,Genetic linkage report,Gene annotation (linkage)|Linkage disequilibrium (report),An informative report on the linkage of alleles.|This includes linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome).,FALSE,,,http://edamontology.org/data_2084,,beta12orEarlier,,,,,,,,,,,,data_0927,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on the linkage of alleles.,Gene annotation (linkage),Linkage disequilibrium (report),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0928,Gene expression profile,Gene expression pattern,"Data quantifying the level of expression of (typically) multiple genes, derived for example from microarray experiments.",FALSE,,,http://edamontology.org/data_2603,,beta12orEarlier,,,,,,,,,,,,data_0928,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data quantifying the level of expression of (typically) multiple genes, derived for example from microarray experiments.",,,Gene expression pattern,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0931,Microarray experiment report,,"microarray experiments including conditions, protocol, sample:data relationships etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0931,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"microarray experiments including conditions, protocol, sample:data relationships etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_0932,Oligonucleotide probe data,,Data on oligonucleotide probes (typically for use with DNA microarrays).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0932,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2717,,,,,Data on oligonucleotide probes (typically for use with DNA microarrays).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_0933,SAGE experimental data,,Output from a serial analysis of gene expression (SAGE) experiment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0933,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2535,,,,,Output from a serial analysis of gene expression (SAGE) experiment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0934,MPSS experimental data,,Massively parallel signature sequencing (MPSS) data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0934,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2535,,,,,Massively parallel signature sequencing (MPSS) data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0935,SBS experimental data,,Sequencing by synthesis (SBS) data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0935,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2535,,,,,Sequencing by synthesis (SBS) data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0936,Sequence tag profile (with gene assignment),,"Tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0936,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2535,,,,,,,,,,,,,1.14,,,,,,,
http://edamontology.org/data_0937,Protein X-ray crystallographic data,,X-ray crystallography data.,FALSE,,,http://edamontology.org/data_2537,,beta12orEarlier,,,,,,,,,,,,data_0937,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,X-ray crystallography data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0938,Protein NMR data,,Protein nuclear magnetic resonance (NMR) raw data.,FALSE,,,http://edamontology.org/data_2537,,beta12orEarlier,,,,,,,,,,,,data_0938,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein nuclear magnetic resonance (NMR) raw data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0939,Protein circular dichroism (CD) spectroscopic data,,Protein secondary structure from protein coordinate or circular dichroism (CD) spectroscopic data.,FALSE,,,http://edamontology.org/data_2537,,beta12orEarlier,,,,,,,,,,,,data_0939,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein secondary structure from protein coordinate or circular dichroism (CD) spectroscopic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0940,Electron microscopy volume map,EM volume map,Volume map data from electron microscopy.,FALSE,,,http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_0940,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Volume map data from electron microscopy.,EM volume map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0941,Electron microscopy model,,Annotation on a structural 3D model (volume map) from electron microscopy.|This might include the location in the model of the known features of a particular macromolecule.,FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_0941,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotation on a structural 3D model (volume map) from electron microscopy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0942,2D PAGE image,,Two-dimensional gel electrophoresis image,FALSE,,,http://edamontology.org/data_3424,,beta12orEarlier,,,,,,,,,,,,data_0942,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Two-dimensional gel electrophoresis image,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0943,Mass spectrometry spectra,,Spectra from mass spectrometry.,FALSE,,,http://edamontology.org/data_2536,,beta12orEarlier,,,,,,,,,,,,data_0943,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Spectra from mass spectrometry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0944,Peptide mass fingerprint,Protein fingerprint|Peak list|Molecular weights standard fingerprint,"A set of peptide masses (peptide mass fingerprint) from mass spectrometry.|A molecular weight standard fingerprint is standard protonated molecular masses e.g. from trypsin (modified porcine trypsin, Promega) and keratin peptides.",FALSE,,,http://edamontology.org/data_2536|http://edamontology.org/data_2979,,beta12orEarlier,,,,,,,,,,,,data_0944,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A set of peptide masses (peptide mass fingerprint) from mass spectrometry.,Protein fingerprint|Peak list,Molecular weights standard fingerprint,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0945,Peptide identification,'Protein identification',"Protein or peptide identifications with evidence supporting the identifications, for example from comparing a peptide mass fingerprint (from mass spectrometry) to a sequence database, or  the set of typical spectra one obtains when running a protein through a mass spectrometer.",FALSE,,,http://edamontology.org/data_0897|http://edamontology.org/data_2979,,beta12orEarlier,,,,,,,,,,,,data_0945,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein or peptide identifications with evidence supporting the identifications, for example from comparing a peptide mass fingerprint (from mass spectrometry) to a sequence database, or  the set of typical spectra one obtains when running a protein through a mass spectrometer.",'Protein identification',,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0946,Pathway or network annotation,,"An informative report about a specific biological pathway or network, typically including a map (diagram) of the pathway.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0946,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2984,,,,,"An informative report about a specific biological pathway or network, typically including a map (diagram) of the pathway.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0947,Biological pathway map,,A map (typically a diagram) of a biological pathway.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0947,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2600,,,,,A map (typically a diagram) of a biological pathway.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0948,Data resource definition,,"A definition of a data resource serving one or more types of data, including metadata and links to the resource or data proper.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0948,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1883,,,,,"A definition of a data resource serving one or more types of data, including metadata and links to the resource or data proper.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0949,Workflow metadata,,"Basic information, annotation or documentation concerning a workflow (but not the workflow itself).",FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_0949,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Basic information, annotation or documentation concerning a workflow (but not the workflow itself).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0950,Mathematical model,Biological model,A biological model represented in mathematical terms.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0950,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A biological model represented in mathematical terms.,Biological model,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0951,Statistical estimate score,,A value representing estimated statistical significance of some observed data; typically sequence database hits.,FALSE,,,http://edamontology.org/data_1772,,beta12orEarlier,,,,,,,,,,,,data_0951,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A value representing estimated statistical significance of some observed data; typically sequence database hits.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0952,EMBOSS database resource definition,,Resource definition for an EMBOSS database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0952,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,Resource definition for an EMBOSS database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0953,Version information,,"Information on a version of software or data, for example name, version number and release date.|Development status / maturity may be part of the version information, for example in case of tools, standards, or some data records.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0953,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,"Information on a version of software or data, for example name, version number and release date.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0954,Database cross-mapping,,"A mapping of the accession numbers (or other database identifier) of entries between (typically) two biological or biomedical databases.|The cross-mapping is typically a table where each row is an accession number and each column is a database being cross-referenced. The cells give the accession number or identifier of the corresponding entry in a database. If a cell in the table is not filled then no mapping could be found for the database. Additional information might be given on version, date etc.",FALSE,,,http://edamontology.org/data_2093,,beta12orEarlier,,,,,,,,,,,,data_0954,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A mapping of the accession numbers (or other database identifier) of entries between (typically) two biological or biomedical databases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0955,Data index,,An index of data of biological relevance.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0955,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An index of data of biological relevance.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0956,Data index report,Database index annotation,A report of an analysis of an index of biological data.,FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_0956,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report of an analysis of an index of biological data.,Database index annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0957,Database metadata,,"Basic information on bioinformatics database(s) or other data sources such as name, type, description, URL etc.",FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_0957,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Basic information on bioinformatics database(s) or other data sources such as name, type, description, URL etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0958,Tool metadata,,"Basic information about one or more bioinformatics applications or packages, such as name, type, description, or other documentation.",FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_0958,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Basic information about one or more bioinformatics applications or packages, such as name, type, description, or other documentation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0959,Job metadata,,Textual metadata on a submitted or completed job.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0959,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,Textual metadata on a submitted or completed job.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0960,User metadata,,"Textual metadata on a software author or end-user, for example a person or other software.",FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_0960,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Textual metadata on a software author or end-user, for example a person or other software.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0962,Small molecule report,Small molecule annotation|Chemical structure report|Chemical compound annotation,An informative report on a specific chemical compound.,FALSE,,,http://edamontology.org/data_2085,,beta12orEarlier,,,,,,,,,,,,data_0962,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a specific chemical compound.,Small molecule annotation|Chemical structure report|Chemical compound annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0963,Cell line report,Cell line annotation|Organism strain data,"Report on a particular strain of organism cell line including plants, virus, fungi and bacteria. The data typically includes strain number, organism type, growth conditions, source and so on.",FALSE,,,http://edamontology.org/data_2530,,beta12orEarlier,,,,,,,,,,,,data_0963,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on a particular strain of organism cell line including plants, virus, fungi and bacteria. The data typically includes strain number, organism type, growth conditions, source and so on.",Cell line annotation|Organism strain data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0964,Scent annotation,,An informative report about a specific scent.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0964,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report about a specific scent.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_0966,Ontology term,Ontology class name|Ontology terms,A term (name) from an ontology.,FALSE,,,http://edamontology.org/data_0967,,beta12orEarlier,,,,,,,,,,,,data_0966,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A term (name) from an ontology.,Ontology class name|Ontology terms,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0967,Ontology concept data,Ontology class metadata|Ontology term metadata,Data concerning or derived from a concept from a biological ontology.,FALSE,,,http://edamontology.org/data_2353,,beta12orEarlier,,,,,,,,,,,,data_0967,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning or derived from a concept from a biological ontology.,Ontology class metadata|Ontology term metadata,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0968,Keyword,Phrases|Term,"Keyword(s) or phrase(s) used (typically) for text-searching purposes.|Boolean operators (AND, OR and NOT) and wildcard characters may be allowed.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_0968,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:BooleanQueryString|Moby:QueryString|Moby:Wildcard_Query|Moby:Global_Keyword,Keyword(s) or phrase(s) used (typically) for text-searching purposes.,Phrases|Term,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0970,Citation,Bibliographic reference|Reference,"Bibliographic data that uniquely identifies a scientific article, book or other published material.|A bibliographic reference might include information such as authors, title, journal name, date and (possibly) a link to the abstract or full-text of the article if available.",FALSE,,,http://edamontology.org/data_2526,,beta12orEarlier,,,,,,,,,,,,data_0970,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GCP_SimpleCitation|Moby:Publication,"Bibliographic data that uniquely identifies a scientific article, book or other published material.",Bibliographic reference|Reference,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0971,Article,Article text|Scientific article,"A scientific text, typically a full text article from a scientific journal.",FALSE,,,http://edamontology.org/data_2526|http://edamontology.org/data_3671,,beta12orEarlier,,,,,,,,,,,,data_0971,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A scientific text, typically a full text article from a scientific journal.",,Article text|Scientific article,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0972,Text mining report,Text mining output,An abstract of the results of text mining.|A text mining abstract will typically include an annotated a list of words or sentences extracted from one or more scientific articles.,FALSE,,,http://edamontology.org/data_2048|http://edamontology.org/data_2526,,beta12orEarlier,,,,,,,,,,,,data_0972,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An abstract of the results of text mining.,Text mining output,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0974,Entity identifier,,An identifier of a biological entity or phenomenon.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0974,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,An identifier of a biological entity or phenomenon.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0975,Data resource identifier,,An identifier of a data resource.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0975,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,An identifier of a data resource.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0976,Identifier (typed),,An identifier that identifies a particular type of data.|This concept exists only to assist EDAM maintenance and navigation in graphical browsers.  It does not add semantic information.  This branch provides an alternative organisation of the concepts nested under 'Accession' and 'Name'. All concepts under here are already included under 'Accession' or 'Name'.,FALSE,,,http://edamontology.org/data_0842,,beta12orEarlier,,,,,,,,,,,,data_0976,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier that identifies a particular type of data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0977,Tool identifier,,"An identifier of a bioinformatics tool, e.g. an application or web service.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_0977,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An identifier of a bioinformatics tool, e.g. an application or web service.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0978,Discrete entity identifier,,"Name or other identifier of a discrete entity (any biological thing with a distinct, discrete physical existence).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0978,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"Name or other identifier of a discrete entity (any biological thing with a distinct, discrete physical existence).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0979,Entity feature identifier,,"Name or other identifier of an entity feature (a physical part or region of a discrete biological entity, or a feature that can be mapped to such a thing).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0979,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"Name or other identifier of an entity feature (a physical part or region of a discrete biological entity, or a feature that can be mapped to such a thing).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0980,Entity collection identifier,,Name or other identifier of a collection of discrete biological entities.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0980,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,Name or other identifier of a collection of discrete biological entities.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0981,Phenomenon identifier,,"Name or other identifier of a physical, observable biological occurrence or event.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0981,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"Name or other identifier of a physical, observable biological occurrence or event.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0982,Molecule identifier,,Name or other identifier of a molecule.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_0982,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of a molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0983,Atom ID,Atom identifier,Identifier (e.g. character symbol) of a specific atom.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_0983,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier (e.g. character symbol) of a specific atom.,Atom identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0984,Molecule name,,Name of a specific molecule.,FALSE,,,http://edamontology.org/data_0982|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_0984,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a specific molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0985,Molecule type,,"A label (text token) describing the type a molecule.|For example, 'Protein', 'DNA', 'RNA' etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,Protein|DNA|RNA,,,,,,,,data_0985,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing the type a molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_0986,Chemical identifier,,Unique identifier of a chemical compound.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0986,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1086,,,,,Unique identifier of a chemical compound.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0987,Chromosome name,,Name of a chromosome.,FALSE,,,http://edamontology.org/data_0984|http://edamontology.org/data_2119,,beta12orEarlier,,,,,,,,,,,,data_0987,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a chromosome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0988,Peptide identifier,,Identifier of a peptide chain.,FALSE,,,http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_0988,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a peptide chain.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0989,Protein identifier,,Identifier of a protein.,FALSE,,,http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_0989,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0990,Compound name,Chemical name,Unique name of a chemical compound.,FALSE,,,http://edamontology.org/data_1086|http://edamontology.org/data_0984,,beta12orEarlier,,,,,,,,,,,,data_0990,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique name of a chemical compound.,Chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0991,Chemical registry number,,Unique registry number of a chemical compound.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_0991,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique registry number of a chemical compound.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0992,Ligand identifier,,"Code word for a ligand, for example from a PDB file.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_0992,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1086,,,,,"Code word for a ligand, for example from a PDB file.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_0993,Drug identifier,,Identifier of a drug.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_0993,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a drug.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0994,Amino acid identifier,Residue identifier,Identifier of an amino acid.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_0994,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an amino acid.,Residue identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0995,Nucleotide identifier,,Name or other identifier of a nucleotide.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_0995,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of a nucleotide.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0996,Monosaccharide identifier,,Identifier of a monosaccharide.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_0996,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a monosaccharide.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0997,Chemical name (ChEBI),ChEBI chemical name,Unique name from Chemical Entities of Biological Interest (ChEBI) of a chemical compound.|This is the recommended chemical name for use for example in database annotation.,FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_0997,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique name from Chemical Entities of Biological Interest (ChEBI) of a chemical compound.,ChEBI chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0998,Chemical name (IUPAC),IUPAC chemical name,IUPAC recommended name of a chemical compound.,FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_0998,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IUPAC recommended name of a chemical compound.,IUPAC chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_0999,Chemical name (INN),INN chemical name,"International Non-proprietary Name (INN or 'generic name') of a chemical compound, assigned by the World Health Organisation (WHO).",FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_0999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"International Non-proprietary Name (INN or 'generic name') of a chemical compound, assigned by the World Health Organisation (WHO).",INN chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1000,Chemical name (brand),Brand chemical name,Brand name of a chemical compound.,FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_1000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Brand name of a chemical compound.,Brand chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1001,Chemical name (synonymous),Synonymous chemical name,Synonymous name of a chemical compound.,FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_1001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Synonymous name of a chemical compound.,Synonymous chemical name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1002,Chemical registry number (CAS),CAS chemical registry number,CAS registry number of a chemical compound.,FALSE,,,http://edamontology.org/data_0991,,beta12orEarlier,,,,,,,,,,,,data_1002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CAS registry number of a chemical compound.,CAS chemical registry number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1003,Chemical registry number (Beilstein),Beilstein chemical registry number,Beilstein registry number of a chemical compound.,FALSE,,,http://edamontology.org/data_0991,,beta12orEarlier,,,,,,,,,,,,data_1003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Beilstein registry number of a chemical compound.,Beilstein chemical registry number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1004,Chemical registry number (Gmelin),Gmelin chemical registry number,Gmelin registry number of a chemical compound.,FALSE,,,http://edamontology.org/data_0991,,beta12orEarlier,,,,,,,,,,,,data_1004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Gmelin registry number of a chemical compound.,Gmelin chemical registry number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1005,HET group name,Short ligand name|Component identifier code,"3-letter code word for a ligand (HET group) from a PDB file, for example ATP.",FALSE,,,http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_1005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"3-letter code word for a ligand (HET group) from a PDB file, for example ATP.",Short ligand name|Component identifier code,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1006,Amino acid name,,String of one or more ASCII characters representing an amino acid.,FALSE,,,http://edamontology.org/data_0994,,beta12orEarlier,,,,,,,,,,,,data_1006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,String of one or more ASCII characters representing an amino acid.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1007,Nucleotide code,,String of one or more ASCII characters representing a nucleotide.,FALSE,,,http://edamontology.org/data_0995|http://edamontology.org/data_0990,,beta12orEarlier,,,,,,,,,,,,data_1007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,String of one or more ASCII characters representing a nucleotide.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1008,Polypeptide chain ID,PDB chain identifier|Polypeptide chain identifier|PDB strand id|Protein chain identifier|Chain identifier,"Identifier of a polypeptide chain from a protein.|This is typically a character (for the chain) appended to a PDB identifier, e.g. 1cukA",FALSE,,,http://edamontology.org/data_0988,,beta12orEarlier,,,,,,,,,,,,data_1008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: chain|PDBML:pdbx_PDB_strand_id,Identifier of a polypeptide chain from a protein.,PDB chain identifier|Polypeptide chain identifier|PDB strand id|Protein chain identifier|Chain identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1009,Protein name,,Name of a protein.,FALSE,,,http://edamontology.org/data_0989|http://edamontology.org/data_0984,,beta12orEarlier,,,,,,,,,,,,data_1009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1010,Enzyme identifier,,Name or other identifier of an enzyme or record from a database of enzymes.,FALSE,,,http://edamontology.org/data_0989,,beta12orEarlier,,,,,,,,,,,,data_1010,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of an enzyme or record from a database of enzymes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1011,EC number,EC code|EC|Enzyme Commission number,An Enzyme Commission (EC) number of an enzyme.,FALSE,,,http://edamontology.org/data_2321,,beta12orEarlier,,,,,,,,,,,,data_1011,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:EC_Number|Moby:Annotated_EC_Number,An Enzyme Commission (EC) number of an enzyme.,EC code|EC|Enzyme Commission number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+.-\.-\.-|[0-9]+\.[0-9]+\.-\.-|[0-9]+\.[0-9]+\.[0-9]+\.-|[0-9]+\.[0-9]+\.[0-9]+\.[0-9]+,,
http://edamontology.org/data_1012,Enzyme name,,Name of an enzyme.,FALSE,,,http://edamontology.org/data_1010|http://edamontology.org/data_1009,,beta12orEarlier,,,,,,,,,,,,data_1012,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of an enzyme.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1013,Restriction enzyme name,,Name of a restriction enzyme.,FALSE,,,http://edamontology.org/data_1012,,beta12orEarlier,,,,,,,,,,,,data_1013,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a restriction enzyme.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1014,Sequence position specification,,A specification (partial or complete) of one or more positions or regions of a molecular sequence or map.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1014,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1016,,,,,A specification (partial or complete) of one or more positions or regions of a molecular sequence or map.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1015,Sequence feature ID,,"A unique identifier of molecular sequence feature, for example an ID of a feature that is unique within the scope of the GFF file.",FALSE,,,http://edamontology.org/data_3034|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1015,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique identifier of molecular sequence feature, for example an ID of a feature that is unique within the scope of the GFF file.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1016,Sequence position,SO:0000735,"A position of one or more points (base or residue) in a sequence, or part of such a specification.",FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_1016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_atom_site|PDBML:_atom_site.id|WHATIF: number,"A position of one or more points (base or residue) in a sequence, or part of such a specification.",,,SO:0000735,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1017,Sequence range,,Specification of range(s) of sequence positions.,FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_1017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Specification of range(s) of sequence positions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1018,Nucleic acid feature identifier,,Name or other identifier of an nucleic acid feature.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1018,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1015,,,,,Name or other identifier of an nucleic acid feature.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1019,Protein feature identifier,,Name or other identifier of a protein feature.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1019,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1015,,,,,Name or other identifier of a protein feature.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1020,Sequence feature key,Sequence feature method|Sequence feature type,"The type of a sequence feature, typically a term or accession from the Sequence Ontology, for example an EMBL or Swiss-Prot sequence feature key.|A feature key indicates the biological nature of the feature or information about changes to or versions of the sequence.",FALSE,,,http://edamontology.org/data_2914,,beta12orEarlier,,,,,,,,,,,,data_1020,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The type of a sequence feature, typically a term or accession from the Sequence Ontology, for example an EMBL or Swiss-Prot sequence feature key.",Sequence feature method|Sequence feature type,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1021,Sequence feature qualifier,,Typically one of the EMBL or Swiss-Prot feature qualifiers.|Feature qualifiers hold information about a feature beyond that provided by the feature key and location.,FALSE,,,http://edamontology.org/data_2914,,beta12orEarlier,,,,,,,,,,,,data_1021,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Typically one of the EMBL or Swiss-Prot feature qualifiers.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1022,Sequence feature label,Sequence feature name,"A name of a sequence feature, e.g. the name of a feature to be displayed to an end-user. Typically an EMBL or Swiss-Prot feature label.|A feature label identifies a feature of a sequence database entry. When used with the database name and the entry's primary accession number, it is a unique identifier of that feature.",FALSE,,,http://edamontology.org/data_3034|http://edamontology.org/data_2099|http://edamontology.org/data_2914,,beta12orEarlier,,,,,,,,,,,,data_1022,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A name of a sequence feature, e.g. the name of a feature to be displayed to an end-user. Typically an EMBL or Swiss-Prot feature label.",Sequence feature name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1023,EMBOSS Uniform Feature Object,UFO,The name of a sequence feature-containing entity adhering to the standard feature naming scheme used by all EMBOSS applications.,FALSE,,,http://edamontology.org/data_3034|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1023,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a sequence feature-containing entity adhering to the standard feature naming scheme used by all EMBOSS applications.,UFO,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1024,Codon name,,String of one or more ASCII characters representing a codon.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1024,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,String of one or more ASCII characters representing a codon.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1025,Gene identifier,,"An identifier of a gene, such as a name/symbol or a unique identifier of a gene in a database.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1025,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GeneAccessionList,"An identifier of a gene, such as a name/symbol or a unique identifier of a gene in a database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1026,Gene symbol,,The short name of a gene; a single word that does not contain white space characters. It is typically derived from the gene name.,FALSE,,,http://edamontology.org/data_2299,,beta12orEarlier,,,,,,,,,,,,data_1026,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:Global_GeneSymbol|Moby_namespace:Global_GeneCommonName,The short name of a gene; a single word that does not contain white space characters. It is typically derived from the gene name.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1027,Gene ID (NCBI),Gene identifier (NCBI)|NCBI gene ID|Entrez gene ID|NCBI geneid|Gene identifier (Entrez),An NCBI unique identifier of a gene.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_1098,,beta12orEarlier,,,,,,,,,,,,data_1027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs:LocusID|http://www.geneontology.org/doc/GO.xrf_abbs:NCBI_Gene,An NCBI unique identifier of a gene.,Gene identifier (NCBI)|NCBI gene ID|Entrez gene ID|NCBI geneid|Gene identifier (Entrez),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1028,Gene identifier (NCBI RefSeq),,An NCBI RefSeq unique identifier of a gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1028,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1027,,,,,An NCBI RefSeq unique identifier of a gene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1029,Gene identifier (NCBI UniGene),,An NCBI UniGene unique identifier of a gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1029,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1104,,,,,An NCBI UniGene unique identifier of a gene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1030,Gene identifier (Entrez),,An Entrez unique identifier of a gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1030,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1027,,,,,An Entrez unique identifier of a gene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,[0-9]+,,
http://edamontology.org/data_1031,Gene ID (CGD),CGD ID,Identifier of a gene or feature from the CGD database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1031,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a gene or feature from the CGD database.,CGD ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1032,Gene ID (DictyBase),,Identifier of a gene from DictyBase.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1032,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a gene from DictyBase.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1033,Ensembl gene ID,Gene ID (Ensembl),Unique identifier for a gene (or other feature) from the Ensembl database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2610,,beta12orEarlier,,,,,,,,,,,,data_1033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a gene (or other feature) from the Ensembl database.,Gene ID (Ensembl),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1034,Gene ID (SGD),SGD identifier,Identifier of an entry from the SGD database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2632,,beta12orEarlier,,,,,,,,,,,,data_1034,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the SGD database.,SGD identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,S[0-9]+,,
http://edamontology.org/data_1035,Gene ID (GeneDB),GeneDB identifier,Identifier of a gene from the GeneDB database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:GeneDB,Identifier of a gene from the GeneDB database.,GeneDB identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9.-]*,,
http://edamontology.org/data_1036,TIGR identifier,,Identifier of an entry from the TIGR database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_1036,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the TIGR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1037,TAIR accession (gene),,Identifier of an gene from the TAIR database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2387,,beta12orEarlier,,,,,,,,,,,,data_1037,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an gene from the TAIR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,Gene:[0-9]{7},,
http://edamontology.org/data_1038,Protein domain ID,,Identifier of a protein structural domain.|This is typically a character or string concatenated with a PDB identifier and a chain identifier.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein structural domain.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1039,SCOP domain identifier,,Identifier of a protein domain (or other node) from the SCOP database.,FALSE,,,http://edamontology.org/data_1038,,beta12orEarlier,,,,,,,,,,,,data_1039,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein domain (or other node) from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1040,CATH domain ID,CATH domain identifier,Identifier of a protein domain from CATH.,FALSE,,,http://edamontology.org/data_2700,,beta12orEarlier,,,,1nr3A00,,,,,,,,data_1040,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein domain from CATH.,CATH domain identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1041,SCOP concise classification string (sccs),,"A SCOP concise classification string (sccs) is a compact representation of a SCOP domain classification.|An scss includes the class (alphabetical), fold, superfamily and family (all numerical) to which a given domain belongs.",FALSE,,,http://edamontology.org/data_1039,,beta12orEarlier,,,,,,,,,,,,data_1041,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A SCOP concise classification string (sccs) is a compact representation of a SCOP domain classification.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1042,SCOP sunid,SCOP unique identifier|sunid,"Unique identifier (number) of an entry in the SCOP hierarchy, for example 33229.|A sunid uniquely identifies an entry in the SCOP hierarchy, including leaves (the SCOP domains) and higher level nodes including entries corresponding to the protein level.",FALSE,,,http://edamontology.org/data_1039,,beta12orEarlier,,,,33229,,,,,,,,data_1042,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Unique identifier (number) of an entry in the SCOP hierarchy, for example 33229.",SCOP unique identifier|sunid,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1043,CATH node ID,CATH node identifier|CATH code,A code number identifying a node from the CATH database.,FALSE,,,http://edamontology.org/data_2700,,beta12orEarlier,,,,3.30.1190.10.1.1.1.1.1,,,,,,,,data_1043,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A code number identifying a node from the CATH database.,CATH node identifier|CATH code,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1044,Kingdom name,,"The name of a biological kingdom (Bacteria, Archaea, or Eukaryotes).",FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_1044,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The name of a biological kingdom (Bacteria, Archaea, or Eukaryotes).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1045,Species name,Organism species,The name of a species (typically a taxonomic group) of organism.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_1045,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a species (typically a taxonomic group) of organism.,Organism species,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1046,Strain name,,"The name of a strain of an organism variant, typically a plant, virus or bacterium.",FALSE,,,http://edamontology.org/data_2379|http://edamontology.org/data_2909,,beta12orEarlier,,,,,,,,,,,,data_1046,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The name of a strain of an organism variant, typically a plant, virus or bacterium.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1047,URI,URIs,A string of characters that name or otherwise identify a resource on the Internet.,FALSE,,,http://edamontology.org/data_0842,,beta12orEarlier,,,,,,,,,,,,data_1047,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A string of characters that name or otherwise identify a resource on the Internet.,URIs,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1048,Database ID,Database identifier,An identifier of a biological or bioinformatics database.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1048,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a biological or bioinformatics database.,Database identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1049,Directory name,,The name of a directory.,FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1049,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a directory.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1050,File name,,The name (or part of a name) of a file (of any type).,FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1050,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name (or part of a name) of a file (of any type).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1051,Ontology name,,Name of an ontology of biological or bioinformatics concepts and relations.,FALSE,,,http://edamontology.org/data_2338|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1051,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of an ontology of biological or bioinformatics concepts and relations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1052,URL,,A Uniform Resource Locator (URL).,FALSE,,,http://edamontology.org/data_1047,,beta12orEarlier,,,,,,,,,,,,data_1052,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Link|Moby:URL,A Uniform Resource Locator (URL).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1053,URN,,A Uniform Resource Name (URN).,FALSE,,,http://edamontology.org/data_1047,,beta12orEarlier,,,,,,,,,,,,data_1053,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A Uniform Resource Name (URN).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1055,LSID,Life Science Identifier,A Life Science Identifier (LSID) - a unique identifier of some data.|LSIDs provide a standard way to locate and describe data. An LSID is represented as a Uniform Resource Name (URN) with the following format: URN:LSID:<Authority>:<Namespace>:<ObjectID>[:<Version>],FALSE,,,http://edamontology.org/data_1053,,beta12orEarlier,,,,,,,,,,,,data_1055,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A Life Science Identifier (LSID) - a unique identifier of some data.,Life Science Identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1056,Database name,,The name of a biological or bioinformatics database.,FALSE,,,http://edamontology.org/data_1048|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1056,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a biological or bioinformatics database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1057,Sequence database name,,The name of a molecular sequence database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1057,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1056,,,,,The name of a molecular sequence database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1058,Enumerated file name,,The name of a file (of any type) with restricted possible values.,FALSE,,,http://edamontology.org/data_1050,,beta12orEarlier,,,,,,,,,,,,data_1058,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a file (of any type) with restricted possible values.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1059,File name extension,,The extension of a file name.|A file extension is the characters appearing after the final '.' in the file name.,FALSE,,,http://edamontology.org/data_1050,,beta12orEarlier,,,,,,,,,,,,data_1059,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The extension of a file name.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1060,File base name,,The base name of a file.|A file base name is the file name stripped of its directory specification and extension.,FALSE,,,http://edamontology.org/data_1050,,beta12orEarlier,,,,,,,,,,,,data_1060,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The base name of a file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1061,QSAR descriptor name,,Name of a QSAR descriptor.,FALSE,,,http://edamontology.org/data_2110|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1061,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a QSAR descriptor.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1062,Database entry identifier,,An identifier of an entry from a database where the same type of identifier is used for objects (data) of different semantic type.|This concept is required for completeness. It should never have child concepts.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1062,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,An identifier of an entry from a database where the same type of identifier is used for objects (data) of different semantic type.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1063,Sequence identifier,,An identifier of molecular sequence(s) or entries from a molecular sequence database.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1063,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of molecular sequence(s) or entries from a molecular sequence database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1064,Sequence set ID,,An identifier of a set of molecular sequence(s).,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1064,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a set of molecular sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1065,Sequence signature identifier,,Identifier of a sequence signature (motif or profile) for example from a database of sequence patterns.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1065,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1114|http://edamontology.org/data_1115,,,,,Identifier of a sequence signature (motif or profile) for example from a database of sequence patterns.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1066,Sequence alignment ID,,"Identifier of a molecular sequence alignment, for example a record from an alignment database.",FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1066,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a molecular sequence alignment, for example a record from an alignment database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1067,Phylogenetic distance matrix identifier,,Identifier of a phylogenetic distance matrix.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1067,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0976,,,,,Identifier of a phylogenetic distance matrix.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1068,Phylogenetic tree ID,,Identifier of a phylogenetic tree for example from a phylogenetic tree database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a phylogenetic tree for example from a phylogenetic tree database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1069,Comparison matrix identifier,Substitution matrix identifier,An identifier of a comparison matrix.,FALSE,,,http://edamontology.org/data_3036,,beta12orEarlier,,,,,,,,,,,,data_1069,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a comparison matrix.,Substitution matrix identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1070,Structure ID,,"A unique and persistent identifier of a molecular tertiary structure, typically an entry from a structure database.",FALSE,,,http://edamontology.org/data_3035|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1070,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique and persistent identifier of a molecular tertiary structure, typically an entry from a structure database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1071,Structural (3D) profile ID,Structural profile identifier,Identifier or name of a structural (3D) profile or template (representing a structure or structure alignment).,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1071,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier or name of a structural (3D) profile or template (representing a structure or structure alignment).,Structural profile identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1072,Structure alignment ID,,Identifier of an entry from a database of tertiary structure alignments.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1072,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of tertiary structure alignments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1073,Amino acid index ID,,Identifier of an index of amino acid physicochemical and biochemical property data.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_3036,,beta12orEarlier,,,,,,,,,,,,data_1073,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an index of amino acid physicochemical and biochemical property data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1074,Protein interaction ID,Molecular interaction ID,Identifier of a report of protein interactions from a protein interaction database (typically).,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1074,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Molecular interaction ID,,,Identifier of a report of protein interactions from a protein interaction database (typically).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1075,Protein family identifier,Protein secondary database record identifier,Identifier of a protein family.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1075,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein family.,Protein secondary database record identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1076,Codon usage table name,,Unique name of a codon usage table.,FALSE,,,http://edamontology.org/data_2111|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1076,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique name of a codon usage table.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1077,Transcription factor identifier,,Identifier of a transcription factor (or a TF binding site).,FALSE,,,http://edamontology.org/data_0989|http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1077,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a transcription factor (or a TF binding site).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1078,Experiment annotation ID,,Identifier of an entry from a database of microarray data.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of microarray data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1079,Electron microscopy model ID,,Identifier of an entry from a database of electron microscopy data.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1079,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of electron microscopy data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1080,Gene expression report ID,Gene expression profile identifier,Accession of a report of gene expression (e.g. a gene expression profile) from a database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1080,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a report of gene expression (e.g. a gene expression profile) from a database.,Gene expression profile identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1081,Genotype and phenotype annotation ID,,Identifier of an entry from a database of genotypes and phenotypes.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1081,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of genotypes and phenotypes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1082,Pathway or network identifier,,Identifier of an entry from a database of biological pathways or networks.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1082,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of biological pathways or networks.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1083,Workflow ID,,"Identifier of a biological or biomedical workflow, typically from a database of workflows.",FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1083,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a biological or biomedical workflow, typically from a database of workflows.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1084,Data resource definition ID,Data resource definition identifier,Identifier of a data type definition from some provider.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1084,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a data type definition from some provider.,Data resource definition identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1085,Biological model ID,Biological model identifier,"Identifier of a mathematical model, typically an entry from a database.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1085,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a mathematical model, typically an entry from a database.",Biological model identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1086,Compound identifier,Small molecule identifier|Chemical compound identifier,Identifier of an entry from a database of chemicals.,FALSE,,,http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_1086,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of chemicals.,Small molecule identifier|Chemical compound identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1087,Ontology concept ID,,A unique (typically numerical) identifier of a concept in an ontology of biological or bioinformatics concepts and relations.,FALSE,,,http://edamontology.org/data_3025|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1087,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique (typically numerical) identifier of a concept in an ontology of biological or bioinformatics concepts and relations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1088,Article ID,Article identifier,Unique identifier of a scientific article.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1088,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a scientific article.,Article identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1089,FlyBase ID,,Identifier of an object from the FlyBase database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_1089,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an object from the FlyBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,FB[a-zA-Z_0-9]{2}[0-9]{7},,
http://edamontology.org/data_1091,WormBase name,,"Name of an object from the WormBase database, usually a human-readable name.",FALSE,,,http://edamontology.org/data_2099|http://edamontology.org/data_2113,,beta12orEarlier,,,,,,,,,,,,data_1091,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Name of an object from the WormBase database, usually a human-readable name.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1092,WormBase class,,Class of an object from the WormBase database.|A WormBase class describes the type of object such as 'sequence' or 'protein'.,FALSE,,,http://edamontology.org/data_2113,,beta12orEarlier,,,,,,,,,,,,data_1092,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Class of an object from the WormBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1093,Sequence accession,Sequence accession number,"A persistent, unique identifier of a molecular sequence database entry.",FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_1063,,beta12orEarlier,,,,,,,,,,,,data_1093,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A persistent, unique identifier of a molecular sequence database entry.",Sequence accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1094,Sequence type,,"A label (text token) describing a type of molecular sequence.|Sequence type might reflect the molecule (protein, nucleic acid etc) or the sequence itself (gapped, ambiguous etc).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1094,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing a type of molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1095,EMBOSS Uniform Sequence Address,EMBOSS USA,The name of a sequence-based entity adhering to the standard sequence naming scheme used by all EMBOSS applications.,FALSE,,,http://edamontology.org/data_1063|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1095,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a sequence-based entity adhering to the standard sequence naming scheme used by all EMBOSS applications.,EMBOSS USA,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1096,Sequence accession (protein),Protein sequence accession number,Accession number of a protein sequence database entry.,FALSE,,,http://edamontology.org/data_1093,,beta12orEarlier,,,,,,,,,,,,data_1096,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a protein sequence database entry.,Protein sequence accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1097,Sequence accession (nucleic acid),Nucleotide sequence accession number,Accession number of a nucleotide sequence database entry.,FALSE,,,http://edamontology.org/data_1093,,beta12orEarlier,,,,,,,,,,,,data_1097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a nucleotide sequence database entry.,Nucleotide sequence accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1098,RefSeq accession,RefSeq ID,Accession number of a RefSeq database entry.,FALSE,,,http://edamontology.org/data_2362,,beta12orEarlier,,,,,,,,,,,,data_1098,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a RefSeq database entry.,RefSeq ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,(NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|YP|ZP)_[0-9]+,,
http://edamontology.org/data_1099,UniProt accession (extended),,Accession number of a UniProt (protein sequence) database entry. May contain version or isoform number.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,Q7M1G0|P43353-2|P01012.107,,,,,,,,data_1099,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3021,,,,,Accession number of a UniProt (protein sequence) database entry. May contain version or isoform number.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]|[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9].[0-9]+|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9].[0-9]+|[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]-[0-9]+|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]-[0-9]+,,
http://edamontology.org/data_1100,PIR identifier,PIR ID|PIR accession number,An identifier of PIR sequence database entry.,FALSE,,,http://edamontology.org/data_1096,,beta12orEarlier,,,,,,,,,,,,data_1100,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of PIR sequence database entry.,PIR ID|PIR accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1101,TREMBL accession,,Identifier of a TREMBL sequence database entry.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1101,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a TREMBL sequence database entry.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_3021,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/data_1102,Gramene primary identifier,Gramene primary ID,Primary identifier of a Gramene database entry.,FALSE,,,http://edamontology.org/data_2915,,beta12orEarlier,,,,,,,,,,,,data_1102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Primary identifier of a Gramene database entry.,Gramene primary ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1103,EMBL/GenBank/DDBJ ID,,Identifier of a (nucleic acid) entry from the EMBL/GenBank/DDBJ databases.,FALSE,,,http://edamontology.org/data_1097,,beta12orEarlier,,,,,,,,,,,,data_1103,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a (nucleic acid) entry from the EMBL/GenBank/DDBJ databases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1104,Sequence cluster ID (UniGene),UniGene cluster ID|UniGene cluster id|UniGene identifier|UniGene ID,A unique identifier of an entry (gene cluster) from the NCBI UniGene database.,FALSE,,,http://edamontology.org/data_1112,,beta12orEarlier,,,,,,,,,,,,data_1104,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of an entry (gene cluster) from the NCBI UniGene database.,UniGene cluster ID|UniGene cluster id|UniGene identifier|UniGene ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1105,dbEST accession,dbEST ID,Identifier of a dbEST database entry.,FALSE,,,http://edamontology.org/data_2728|http://edamontology.org/data_2292,,beta12orEarlier,,,,,,,,,,,,data_1105,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a dbEST database entry.,dbEST ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1106,dbSNP ID,dbSNP identifier,Identifier of a dbSNP database entry.,FALSE,,,http://edamontology.org/data_2294,,beta12orEarlier,,,,,,,,,,,,data_1106,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a dbSNP database entry.,dbSNP identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1110,EMBOSS sequence type,,The EMBOSS type of a molecular sequence.|See the EMBOSS documentation (http://emboss.sourceforge.net/) for a definition of what this includes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1110,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The EMBOSS type of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1111,EMBOSS listfile,,List of EMBOSS Uniform Sequence Addresses (EMBOSS listfile).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1111,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2872,,,,,List of EMBOSS Uniform Sequence Addresses (EMBOSS listfile).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1112,Sequence cluster ID,,An identifier of a cluster of molecular sequence(s).,FALSE,,,http://edamontology.org/data_1064,,beta12orEarlier,,,,,,,,,,,,data_1112,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a cluster of molecular sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1113,Sequence cluster ID (COG),COG ID,Unique identifier of an entry from the COG database.,FALSE,,,http://edamontology.org/data_1112,,beta12orEarlier,,,,,,,,,,,,data_1113,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the COG database.,COG ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1114,Sequence motif identifier,,"Identifier of a sequence motif, for example an entry from a motif database.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1114,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a sequence motif, for example an entry from a motif database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1115,Sequence profile ID,,Identifier of a sequence profile.|A sequence profile typically represents a sequence alignment.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1115,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a sequence profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1116,ELM ID,,Identifier of an entry from the ELMdb database of protein functional sites.,FALSE,,,http://edamontology.org/data_1114,,beta12orEarlier,,,,,,,,,,,,data_1116,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the ELMdb database of protein functional sites.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1117,Prosite accession number,Prosite ID,Accession number of an entry from the Prosite database.,FALSE,,,http://edamontology.org/data_1114,,beta12orEarlier,,,,,,,,,,,,data_1117,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the Prosite database.,Prosite ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PS[0-9]{5},,
http://edamontology.org/data_1118,HMMER hidden Markov model ID,,Unique identifier or name of a HMMER hidden Markov model.,FALSE,,,http://edamontology.org/data_1115,,beta12orEarlier,,,,,,,,,,,,data_1118,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier or name of a HMMER hidden Markov model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1119,JASPAR profile ID,,Unique identifier or name of a profile from the JASPAR database.,FALSE,,,http://edamontology.org/data_1115,,beta12orEarlier,,,,,,,,,,,,data_1119,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier or name of a profile from the JASPAR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1120,Sequence alignment type,,"A label (text token) describing the type of a sequence alignment.|Possible values include for example the EMBOSS alignment types, BLAST alignment types and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1120,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing the type of a sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1121,BLAST sequence alignment type,,The type of a BLAST sequence alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1121,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The type of a BLAST sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1122,Phylogenetic tree type,,"A label (text token) describing the type of a phylogenetic tree.|For example 'nj', 'upgmp' etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,nj|upgmp,,,,,,,,data_1122,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing the type of a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1123,TreeBASE study accession number,,Accession number of an entry from the TreeBASE database.,FALSE,,,http://edamontology.org/data_1068,,beta12orEarlier,,,,,,,,,,,,data_1123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the TreeBASE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1124,TreeFam accession number,,Accession number of an entry from the TreeFam database.,FALSE,,,http://edamontology.org/data_1068,,beta12orEarlier,,,,,,,,,,,,data_1124,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the TreeFam database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1125,Comparison matrix type,,"A label (text token) describing the type of a comparison matrix.|For example 'blosum', 'pam', 'gonnet', 'id' etc. Comparison matrix type may be required where a series of matrices of a certain type are used.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,blosum|pam|gonnet|id,,,,,,,,data_1125,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing the type of a comparison matrix.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1126,Comparison matrix name,Substitution matrix name,Unique name or identifier of a comparison matrix.|See for example http://www.ebi.ac.uk/Tools/webservices/help/matrix.,FALSE,,,http://edamontology.org/data_1069|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1126,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique name or identifier of a comparison matrix.,Substitution matrix name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1127,PDB ID,PDB identifier|PDBID,An identifier of an entry from the PDB database.,FALSE,,,http://edamontology.org/data_1070,,beta12orEarlier,,,,,,,,,,,,data_1127,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an entry from the PDB database.,PDB identifier|PDBID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9]{4},,
http://edamontology.org/data_1128,AAindex ID,,Identifier of an entry from the AAindex database.,FALSE,,,http://edamontology.org/data_1073,,beta12orEarlier,,,,,,,,,,,,data_1128,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the AAindex database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1129,BIND accession number,,Accession number of an entry from the BIND database.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_1129,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the BIND database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1130,IntAct accession number,,Accession number of an entry from the IntAct database.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_1130,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the IntAct database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,EBI-[0-9]+,,
http://edamontology.org/data_1131,Protein family name,,Name of a protein family.,FALSE,,,http://edamontology.org/data_1075|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1131,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a protein family.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1132,InterPro entry name,,"Name of an InterPro entry, usually indicating the type of protein matches for that entry.",FALSE,,,http://edamontology.org/data_1131,,beta12orEarlier,,,,,,,,,,,,data_1132,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Name of an InterPro entry, usually indicating the type of protein matches for that entry.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1133,InterPro accession,InterPro primary accession|InterPro primary accession number,Primary accession number of an InterPro entry.|Every InterPro entry has a unique accession number to provide a persistent citation of database records.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,IPR015590,,,,,,,,data_1133,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Primary accession number of an InterPro entry.,InterPro primary accession|InterPro primary accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,IPR[0-9]{6},,
http://edamontology.org/data_1134,InterPro secondary accession,InterPro secondary accession number,Secondary accession number of an InterPro entry.,FALSE,,,http://edamontology.org/data_1133,,beta12orEarlier,,,,,,,,,,,,data_1134,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Secondary accession number of an InterPro entry.,InterPro secondary accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1135,Gene3D ID,,Unique identifier of an entry from the Gene3D database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1135,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the Gene3D database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1136,PIRSF ID,,Unique identifier of an entry from the PIRSF database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1136,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the PIRSF database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PIRSF[0-9]{6},,
http://edamontology.org/data_1137,PRINTS code,,The unique identifier of an entry in the PRINTS database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1137,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The unique identifier of an entry in the PRINTS database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PR[0-9]{5},,
http://edamontology.org/data_1138,Pfam accession number,,Accession number of a Pfam entry.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a Pfam entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PF[0-9]{5},,
http://edamontology.org/data_1139,SMART accession number,,Accession number of an entry from the SMART database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1139,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the SMART database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,SM[0-9]{5},,
http://edamontology.org/data_1140,Superfamily hidden Markov model number,,Unique identifier (number) of a hidden Markov model from the Superfamily database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1140,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier (number) of a hidden Markov model from the Superfamily database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1141,TIGRFam ID,TIGRFam accession number,Accession number of an entry (family) from the TIGRFam database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1141,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry (family) from the TIGRFam database.,TIGRFam accession number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1142,ProDom accession number,,A ProDom domain family accession number.|ProDom is a protein domain family database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_1142,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A ProDom domain family accession number.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PD[0-9]+,,
http://edamontology.org/data_1143,TRANSFAC accession number,,Identifier of an entry from the TRANSFAC database.,FALSE,,,http://edamontology.org/data_2911,,beta12orEarlier,,,,,,,,,,,,data_1143,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the TRANSFAC database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1144,ArrayExpress accession number,ArrayExpress experiment ID,Accession number of an entry from the ArrayExpress database.,FALSE,,,http://edamontology.org/data_1078,,beta12orEarlier,,,,,,,,,,,,data_1144,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the ArrayExpress database.,ArrayExpress experiment ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[AEP]-[a-zA-Z_0-9]{4}-[0-9]+,,
http://edamontology.org/data_1145,PRIDE experiment accession number,,PRIDE experiment accession number.,FALSE,,,http://edamontology.org/data_1078,,beta12orEarlier,,,,,,,,,,,,data_1145,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PRIDE experiment accession number.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_1146,EMDB ID,,Identifier of an entry from the EMDB electron microscopy database.,FALSE,,,http://edamontology.org/data_1079,,beta12orEarlier,,,,,,,,,,,,data_1146,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the EMDB electron microscopy database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1147,GEO accession number,,Accession number of an entry from the GEO database.,FALSE,,,http://edamontology.org/data_1080,,beta12orEarlier,,,,,,,,,,,,data_1147,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the GEO database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,o^GDS[0-9]+,,
http://edamontology.org/data_1148,GermOnline ID,,Identifier of an entry from the GermOnline database.,FALSE,,,http://edamontology.org/data_1080,,beta12orEarlier,,,,,,,,,,,,data_1148,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the GermOnline database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1149,EMAGE ID,,Identifier of an entry from the EMAGE database.,FALSE,,,http://edamontology.org/data_1080,,beta12orEarlier,,,,,,,,,,,,data_1149,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the EMAGE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1150,Disease ID,,Accession number of an entry from a database of disease.,FALSE,,,http://edamontology.org/data_3667|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1150,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from a database of disease.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1151,HGVbase ID,,Identifier of an entry from the HGVbase database.,FALSE,,,http://edamontology.org/data_1081,,beta12orEarlier,,,,,,,,,,,,data_1151,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the HGVbase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1152,HIVDB identifier,,Identifier of an entry from the HIVDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1152,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,Identifier of an entry from the HIVDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1153,OMIM ID,,Identifier of an entry from the OMIM database.,FALSE,,,http://edamontology.org/data_1081,,beta12orEarlier,,,,,,,,,,,,data_1153,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the OMIM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[*#+%^]?[0-9]{6},,
http://edamontology.org/data_1154,KEGG object identifier,,Unique identifier of an object from one of the KEGG databases (excluding the GENES division).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_1154,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an object from one of the KEGG databases (excluding the GENES division).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1155,Pathway ID (reactome),Reactome ID,Identifier of an entry from the Reactome database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_1155,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the Reactome database.,Reactome ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,REACT_[0-9]+(.[0-9]+)?,,
http://edamontology.org/data_1156,Pathway ID (aMAZE),aMAZE ID,Identifier of an entry from the aMAZE database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1156,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1082,,,,,Identifier of an entry from the aMAZE database.,aMAZE ID,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1157,Pathway ID (BioCyc),BioCyc pathway ID,Identifier of an pathway from the BioCyc biological pathways database.,FALSE,,,http://edamontology.org/data_2365|http://edamontology.org/data_2104,,beta12orEarlier,,,,,,,,,,,,data_1157,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an pathway from the BioCyc biological pathways database.,BioCyc pathway ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1158,Pathway ID (INOH),INOH identifier,Identifier of an entry from the INOH database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_1158,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the INOH database.,INOH identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1159,Pathway ID (PATIKA),PATIKA ID,Identifier of an entry from the PATIKA database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_1159,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the PATIKA database.,PATIKA ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1160,Pathway ID (CPDB),CPDB ID,"Identifier of an entry from the CPDB (ConsensusPathDB) biological pathways database, which is an identifier from an external database integrated into CPDB.|This concept refers to identifiers used by the databases collated in CPDB; CPDB identifiers are not independently defined.",FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_1160,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of an entry from the CPDB (ConsensusPathDB) biological pathways database, which is an identifier from an external database integrated into CPDB.",CPDB ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1161,Pathway ID (Panther),Panther Pathways ID,Identifier of a biological pathway from the Panther Pathways database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_1161,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological pathway from the Panther Pathways database.,Panther Pathways ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PTHR[0-9]{5},,
http://edamontology.org/data_1162,MIRIAM identifier,,Unique identifier of a MIRIAM data resource.|This is the identifier used internally by MIRIAM for a data type.,FALSE,,,http://edamontology.org/data_2902,,beta12orEarlier,,,,MIR:00100005,,,,,,,,data_1162,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a MIRIAM data resource.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,MIR:[0-9]{8},,
http://edamontology.org/data_1163,MIRIAM data type name,,The name of a data type from the MIRIAM database.,FALSE,,,http://edamontology.org/data_2253,,beta12orEarlier,,,,,,,,,,,,data_1163,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a data type from the MIRIAM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1164,MIRIAM URI,identifiers.org synonym,"The URI (URL or URN) of a data entity from the MIRIAM database.|A MIRIAM URI consists of the URI of the MIRIAM data type (PubMed, UniProt etc) followed by the identifier of an element of that data type, for example PMID for a publication or an accession number for a GO term.",FALSE,,,http://edamontology.org/data_1047|http://edamontology.org/data_2902,,beta12orEarlier,,,,urn:miriam:pubmed:16333295|urn:miriam:obo.go:GO%3A0045202,,,,,,,,data_1164,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The URI (URL or URN) of a data entity from the MIRIAM database.,identifiers.org synonym,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1165,MIRIAM data type primary name,,The primary name of a data type from the MIRIAM database.|The primary name of a MIRIAM data type is taken from a controlled vocabulary.,FALSE,,,http://edamontology.org/data_1163,,beta12orEarlier,,,,UniProt|Enzyme Nomenclature,,,,,,,,data_1165,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The primary name of a data type from the MIRIAM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1166,MIRIAM data type synonymous name,,A synonymous name of a data type from the MIRIAM database.|A synonymous name for a MIRIAM data type taken from a controlled vocabulary.,FALSE,,,http://edamontology.org/data_1163,,beta12orEarlier,,,,,,,,,,,,data_1166,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A synonymous name of a data type from the MIRIAM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1167,Taverna workflow ID,,Unique identifier of a Taverna workflow.,FALSE,,,http://edamontology.org/data_1083,,beta12orEarlier,,,,,,,,,,,,data_1167,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a Taverna workflow.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1170,Biological model name,,Name of a biological (mathematical) model.,FALSE,,,http://edamontology.org/data_1085|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1170,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a biological (mathematical) model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1171,BioModel ID,,Unique identifier of an entry from the BioModel database.,FALSE,,,http://edamontology.org/data_2891,,beta12orEarlier,,,,,,,,,,,,data_1171,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the BioModel database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,(BIOMD|MODEL)[0-9]{10},,
http://edamontology.org/data_1172,PubChem CID,PubChem compound accession identifier,"Chemical structure specified in PubChem Compound Identification (CID), a non-zero integer identifier for a unique chemical structure.",FALSE,,,http://edamontology.org/data_2639|http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_1172,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Chemical structure specified in PubChem Compound Identification (CID), a non-zero integer identifier for a unique chemical structure.",PubChem compound accession identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_1173,ChemSpider ID,,Identifier of an entry from the ChemSpider database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_1173,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the ChemSpider database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_1174,ChEBI ID,ChEBI IDs|ChEBI identifier,Identifier of an entry from the ChEBI database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_1174,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the ChEBI database.,ChEBI IDs|ChEBI identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,CHEBI:[0-9]+,,
http://edamontology.org/data_1175,BioPax concept ID,,An identifier of a concept from the BioPax ontology.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1175,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the BioPax ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1176,GO concept ID,GO concept identifier,An identifier of a concept from The Gene Ontology.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1176,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from The Gene Ontology.,GO concept identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]{7}|GO:[0-9]{7},,
http://edamontology.org/data_1177,MeSH concept ID,,An identifier of a concept from the MeSH vocabulary.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1177,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the MeSH vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1178,HGNC concept ID,,An identifier of a concept from the HGNC controlled vocabulary.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1178,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the HGNC controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1179,NCBI taxonomy ID,NCBI taxonomy identifier|NCBI tax ID,"A stable unique identifier for each taxon (for a species, a family, an order, or any other group in the NCBI taxonomy database.",FALSE,,,http://edamontology.org/data_2908|http://edamontology.org/data_1087,,beta12orEarlier,,,,9662|3483|182682,,,,,,,,data_1179,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A stable unique identifier for each taxon (for a species, a family, an order, or any other group in the NCBI taxonomy database.",NCBI taxonomy identifier|NCBI tax ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[1-9][0-9]{0,8}",,
http://edamontology.org/data_1180,Plant Ontology concept ID,,An identifier of a concept from the Plant Ontology (PO).,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1180,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the Plant Ontology (PO).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1181,UMLS concept ID,,An identifier of a concept from the UMLS vocabulary.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1181,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the UMLS vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1182,FMA concept ID,,"An identifier of a concept from Foundational Model of Anatomy.|Classifies anatomical entities according to their shared characteristics (genus) and distinguishing characteristics (differentia). Specifies the part-whole and spatial relationships of the entities, morphological transformation of the entities during prenatal development and the postnatal life cycle and principles, rules and definitions according to which classes and relationships in the other three components of FMA are represented.",FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from Foundational Model of Anatomy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,FMA:[0-9]+,,
http://edamontology.org/data_1183,EMAP concept ID,,An identifier of a concept from the EMAP mouse ontology.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1183,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the EMAP mouse ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1184,ChEBI concept ID,,An identifier of a concept from the ChEBI ontology.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1184,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the ChEBI ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1185,MGED concept ID,,An identifier of a concept from the MGED ontology.,FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1185,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the MGED ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1186,myGrid concept ID,,"An identifier of a concept from the myGrid ontology.|The ontology is provided as two components, the service ontology and the domain ontology. The domain ontology acts provides concepts for core bioinformatics data types and their relations. The service ontology describes the physical and operational features of web services.",FALSE,,,http://edamontology.org/data_1087,,beta12orEarlier,,,,,,,,,,,,data_1186,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the myGrid ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1187,PubMed ID,PMID,PubMed unique identifier of an article.,FALSE,,,http://edamontology.org/data_1088,,beta12orEarlier,,,,4963447,,,,,,,,data_1187,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PubMed unique identifier of an article.,PMID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[1-9][0-9]{0,8}",,
http://edamontology.org/data_1188,DOI,Digital Object Identifier,Digital Object Identifier (DOI) of a published article.,FALSE,,,http://edamontology.org/data_1088,,beta12orEarlier,,,,,,,,,,,,data_1188,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Digital Object Identifier (DOI) of a published article.,Digital Object Identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,(doi:)?[0-9]{2}\.[0-9]{4}/.*,,
http://edamontology.org/data_1189,Medline UI,Medline unique identifier,Medline UI (unique identifier) of an article.|The use of Medline UI has been replaced by the PubMed unique identifier.,FALSE,,,http://edamontology.org/data_1088,,beta12orEarlier,,,,,,,,,,,,data_1189,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Medline UI (unique identifier) of an article.,Medline unique identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1190,Tool name,,"The name of a computer package, application, method or function.",FALSE,,,http://edamontology.org/data_0977,,beta12orEarlier,,,,,,,,,,,,data_1190,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The name of a computer package, application, method or function.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1191,Tool name (signature),,"The unique name of a signature (sequence classifier) method.|Signature methods from http://www.ebi.ac.uk/Tools/InterProScan/help.html#results include BlastProDom, FPrintScan, HMMPIR, HMMPfam, HMMSmart, HMMTigr, ProfileScan, ScanRegExp, SuperFamily and HAMAP.",FALSE,,,http://edamontology.org/data_1190,,beta12orEarlier,,,,,,,,,,,,data_1191,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The unique name of a signature (sequence classifier) method.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1192,Tool name (BLAST),BLAST name,"The name of a BLAST tool.|This include 'blastn', 'blastp', 'blastx', 'tblastn' and 'tblastx'.",FALSE,,,http://edamontology.org/data_1190,,beta12orEarlier,,,,,,,,,,,,data_1192,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a BLAST tool.,BLAST name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1193,Tool name (FASTA),,"The name of a FASTA tool.|This includes 'fasta3', 'fastx3', 'fasty3', 'fastf3', 'fasts3' and 'ssearch'.",FALSE,,,http://edamontology.org/data_1190,,beta12orEarlier,,,,,,,,,,,,data_1193,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a FASTA tool.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1194,Tool name (EMBOSS),,The name of an EMBOSS application.,FALSE,,,http://edamontology.org/data_1190,,beta12orEarlier,,,,,,,,,,,,data_1194,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of an EMBOSS application.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1195,Tool name (EMBASSY package),,The name of an EMBASSY package.,FALSE,,,http://edamontology.org/data_1190,,beta12orEarlier,,,,,,,,,,,,data_1195,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of an EMBASSY package.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1201,QSAR descriptor (constitutional),QSAR constitutional descriptor,A QSAR constitutional descriptor.,FALSE,,,http://edamontology.org/data_0847,,beta12orEarlier,,,,,,,,,,,,data_1201,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR constitutional descriptor.,QSAR constitutional descriptor,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1202,QSAR descriptor (electronic),QSAR electronic descriptor,A QSAR electronic descriptor.,FALSE,,,http://edamontology.org/data_0847,,beta12orEarlier,,,,,,,,,,,,data_1202,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR electronic descriptor.,QSAR electronic descriptor,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1203,QSAR descriptor (geometrical),QSAR geometrical descriptor,A QSAR geometrical descriptor.,FALSE,,,http://edamontology.org/data_0847,,beta12orEarlier,,,,,,,,,,,,data_1203,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR geometrical descriptor.,QSAR geometrical descriptor,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1204,QSAR descriptor (topological),QSAR topological descriptor,A QSAR topological descriptor.,FALSE,,,http://edamontology.org/data_0847,,beta12orEarlier,,,,,,,,,,,,data_1204,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR topological descriptor.,QSAR topological descriptor,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1205,QSAR descriptor (molecular),QSAR molecular descriptor,A QSAR molecular descriptor.,FALSE,,,http://edamontology.org/data_0847,,beta12orEarlier,,,,,,,,,,,,data_1205,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A QSAR molecular descriptor.,QSAR molecular descriptor,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1233,Sequence set (protein),,Any collection of multiple protein sequences and associated metadata that do not (typically) correspond to common sequence database records or database entries.,FALSE,,,http://edamontology.org/data_0850,,beta12orEarlier,,,,,,,,,,,,data_1233,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any collection of multiple protein sequences and associated metadata that do not (typically) correspond to common sequence database records or database entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1234,Sequence set (nucleic acid),,Any collection of multiple nucleotide sequences and associated metadata that do not (typically) correspond to common sequence database records or database entries.,FALSE,,,http://edamontology.org/data_0850,,beta12orEarlier,,,,,,,,,,,,data_1234,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any collection of multiple nucleotide sequences and associated metadata that do not (typically) correspond to common sequence database records or database entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1235,Sequence cluster,,"A set of sequences that have been clustered or otherwise classified as belonging to a group including (typically) sequence cluster information.|The cluster might include sequences identifiers, short descriptions, alignment and summary information.",FALSE,,,http://edamontology.org/data_0850,,beta12orEarlier,,,,,,,,,,,,data_1235,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A set of sequences that have been clustered or otherwise classified as belonging to a group including (typically) sequence cluster information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1236,Psiblast checkpoint file,,A file of intermediate results from a PSIBLAST search that is used for priming the search in the next PSIBLAST iteration.|A Psiblast checkpoint file uses ASN.1 Binary Format and usually has the extension '.asn'.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1236,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,A file of intermediate results from a PSIBLAST search that is used for priming the search in the next PSIBLAST iteration.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1237,HMMER synthetic sequences set,,Sequences generated by HMMER package in FASTA-style format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1237,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,Sequences generated by HMMER package in FASTA-style format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1238,Proteolytic digest,,A protein sequence cleaved into peptide fragments (by enzymatic or chemical cleavage) with fragment masses.,FALSE,,,http://edamontology.org/data_1233,,beta12orEarlier,,,,,,,,,,,,data_1238,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A protein sequence cleaved into peptide fragments (by enzymatic or chemical cleavage) with fragment masses.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1239,Restriction digest,,Restriction digest fragments from digesting a nucleotide sequence with restriction sites using a restriction endonuclease.,FALSE,,,http://edamontology.org/data_1234,,beta12orEarlier,,,,,,,,,,,,data_1239,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SO:0000412,Restriction digest fragments from digesting a nucleotide sequence with restriction sites using a restriction endonuclease.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1240,PCR primers,,"Oligonucleotide primer(s) for PCR and DNA amplification, for example a minimal primer set.",FALSE,,,http://edamontology.org/data_1234,,beta12orEarlier,,,,,,,,,,,,data_1240,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Oligonucleotide primer(s) for PCR and DNA amplification, for example a minimal primer set.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1241,vectorstrip cloning vector definition file,,"File of sequence vectors used by EMBOSS vectorstrip application, or any file in same format.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1241,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,"File of sequence vectors used by EMBOSS vectorstrip application, or any file in same format.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1242,Primer3 internal oligo mishybridizing library,,"A library of nucleotide sequences to avoid during hybridisation events. Hybridisation of the internal oligo to sequences in this library is avoided, rather than priming from them. The file is in a restricted FASTA format.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1242,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,"A library of nucleotide sequences to avoid during hybridisation events. Hybridisation of the internal oligo to sequences in this library is avoided, rather than priming from them. The file is in a restricted FASTA format.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1243,Primer3 mispriming library file,,"A nucleotide sequence library of sequences to avoid during amplification (for example repetitive sequences, or possibly the sequences of genes in a gene family that should not be amplified. The file must is in a restricted FASTA format.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1243,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,"A nucleotide sequence library of sequences to avoid during amplification (for example repetitive sequences, or possibly the sequences of genes in a gene family that should not be amplified. The file must is in a restricted FASTA format.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1244,primersearch primer pairs sequence record,,"File of one or more pairs of primer sequences, as used by EMBOSS primersearch application.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1244,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,"File of one or more pairs of primer sequences, as used by EMBOSS primersearch application.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1245,Sequence cluster (protein),Protein sequence cluster,"A cluster of protein sequences.|The sequences are typically related, for example a family of sequences.",FALSE,,,http://edamontology.org/data_1233|http://edamontology.org/data_1235,,beta12orEarlier,,,,,,,,,,,,data_1245,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A cluster of protein sequences.,Protein sequence cluster,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1246,Sequence cluster (nucleic acid),Nucleotide sequence cluster,"A cluster of nucleotide sequences.|The sequences are typically related, for example a family of sequences.",FALSE,,,http://edamontology.org/data_1234|http://edamontology.org/data_1235,,beta12orEarlier,,,,,,,,,,,,data_1246,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A cluster of nucleotide sequences.,Nucleotide sequence cluster,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1249,Sequence length,,"The size (length) of a sequence, subsequence or region in a sequence, or range(s) of lengths.",FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_1249,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The size (length) of a sequence, subsequence or region in a sequence, or range(s) of lengths.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1250,Word size,,Size of a sequence word.|Word size is used for example in word-based sequence database search methods.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1250,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,Size of a sequence word.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1251,Window size,,Size of a sequence window.|A window is a region of fixed size but not fixed position over a molecular sequence. It is typically moved (computationally) over a sequence during scoring.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1251,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,Size of a sequence window.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1252,Sequence length range,,Specification of range(s) of length of sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1252,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,Specification of range(s) of length of sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1253,Sequence information report,,"Report on basic information about a molecular sequence such as name, accession number, type (nucleic or protein), length, description etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1253,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on basic information about a molecular sequence such as name, accession number, type (nucleic or protein), length, description etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2955,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1254,Sequence property,Sequence properties report,"An informative report about non-positional sequence features, typically a report on general molecular sequence properties derived from sequence analysis.",FALSE,,,http://edamontology.org/data_2955,,beta12orEarlier,,,,,,,,,,,,data_1254,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report about non-positional sequence features, typically a report on general molecular sequence properties derived from sequence analysis.",Sequence properties report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1255,Sequence features,Feature record|Sequence features report|General sequence features|Features|SO:0000110,"Annotation of positional features of molecular sequence(s), i.e. that can be mapped to position(s) in the sequence.|This includes annotation of positional sequence features, organised into a standard feature table, or any other report of sequence features.  General feature reports are a source of sequence feature table information although internal conversion would be required.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_1255,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation of positional features of molecular sequence(s), i.e. that can be mapped to position(s) in the sequence.",Feature record|Sequence features report|General sequence features|Features,,SO:0000110,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1256,Sequence features (comparative),,"Comparative data on sequence features such as statistics, intersections (and data on intersections), differences etc.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1256,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1255,,,,,"Comparative data on sequence features such as statistics, intersections (and data on intersections), differences etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1257,Sequence property (protein),,A report of general sequence properties derived from protein sequence data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1257,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0897,,,,,A report of general sequence properties derived from protein sequence data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1258,Sequence property (nucleic acid),,A report of general sequence properties derived from nucleotide sequence data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1258,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0912,,,,,A report of general sequence properties derived from nucleotide sequence data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1259,Sequence complexity report,Sequence property (complexity),"A report on sequence complexity, for example low-complexity or repeat regions in sequences.",FALSE,,,http://edamontology.org/data_1254,,beta12orEarlier,,,,,,,,,,,,data_1259,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on sequence complexity, for example low-complexity or repeat regions in sequences.",Sequence property (complexity),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1260,Sequence ambiguity report,Sequence property (ambiguity),A report on ambiguity in molecular sequence(s).,FALSE,,,http://edamontology.org/data_1254,,beta12orEarlier,,,,,,,,,,,,data_1260,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on ambiguity in molecular sequence(s).,Sequence property (ambiguity),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1261,Sequence composition report,Sequence property (composition),A report (typically a table) on character or word composition / frequency of a molecular sequence(s).,FALSE,,,http://edamontology.org/data_1254,,beta12orEarlier,,,,,,,,,,,,data_1261,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report (typically a table) on character or word composition / frequency of a molecular sequence(s).,Sequence property (composition),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1262,Peptide molecular weight hits,,A report on peptide fragments of certain molecular weight(s) in one or more protein sequences.,FALSE,,,http://edamontology.org/data_1233,,beta12orEarlier,,,,,,,,,,,,data_1262,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on peptide fragments of certain molecular weight(s) in one or more protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1263,Base position variability plot,,A plot of third base position variability in a nucleotide sequence.,FALSE,,,http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_1263,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of third base position variability in a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1264,Sequence composition table,,A table of character or word composition / frequency of a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1264,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1261,,,,,A table of character or word composition / frequency of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1265,Base frequencies table,,A table of base frequencies of a nucleotide sequence.,FALSE,,,http://edamontology.org/data_2082|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_1265,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A table of base frequencies of a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1266,Base word frequencies table,,A table of word composition of a nucleotide sequence.,FALSE,,,http://edamontology.org/data_2082|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_1266,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A table of word composition of a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1267,Amino acid frequencies table,Sequence composition (amino acid frequencies),A table of amino acid frequencies of a protein sequence.,FALSE,,,http://edamontology.org/data_2082|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_1267,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A table of amino acid frequencies of a protein sequence.,Sequence composition (amino acid frequencies),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1268,Amino acid word frequencies table,Sequence composition (amino acid words),A table of amino acid word composition of a protein sequence.,FALSE,,,http://edamontology.org/data_2082|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_1268,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A table of amino acid word composition of a protein sequence.,Sequence composition (amino acid words),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1269,DAS sequence feature annotation,,Annotation of a molecular sequence in DAS format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1269,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1978,,,,,Annotation of a molecular sequence in DAS format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1270,Feature table,Sequence feature table,"Annotation of positional sequence features, organised into a standard feature table.",FALSE,,,http://edamontology.org/data_1255,,beta12orEarlier,,,,,,,,,,,,data_1270,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation of positional sequence features, organised into a standard feature table.",Sequence feature table,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1274,Map,DNA map,A map of (typically one) DNA sequence annotated with positional or non-positional features.,FALSE,,,http://edamontology.org/data_2019,,beta12orEarlier,,,,,,,,,,,,data_1274,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A map of (typically one) DNA sequence annotated with positional or non-positional features.,DNA map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1276,Nucleic acid features,Nucleic acid feature table|Feature table (nucleic acid)|Genome features|Genomic features,An informative report on intrinsic positional features of a nucleotide sequence.|This includes nucleotide sequence feature annotation in any known sequence feature table format and any other report of nucleic acid features.,FALSE,,,http://edamontology.org/data_1255|http://edamontology.org/data_2084,,beta12orEarlier,,,,,,,,,,,,data_1276,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on intrinsic positional features of a nucleotide sequence.,Nucleic acid feature table|Feature table (nucleic acid),Genome features|Genomic features,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1277,Protein features,Protein feature table|Feature table (protein),An informative report on intrinsic positional features of a protein sequence.|This includes protein sequence feature annotation in any known sequence feature table format and any other report of protein features.,FALSE,,,http://edamontology.org/data_1255|http://edamontology.org/data_0896,,beta12orEarlier,,,,,,,,,,,,data_1277,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on intrinsic positional features of a protein sequence.,Protein feature table|Feature table (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1278,Genetic map,Linkage map,"A map showing the relative positions of genetic markers in a nucleic acid sequence, based on estimation of non-physical distance such as recombination frequencies.|A genetic (linkage) map indicates the proximity of two genes on a chromosome, whether two genes are linked and the frequency they are transmitted together to an offspring. They are limited to genetic markers of traits observable only in whole organisms.",FALSE,,,http://edamontology.org/data_1274,,beta12orEarlier,,,,,,,,,,,,data_1278,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GeneticMap,"A map showing the relative positions of genetic markers in a nucleic acid sequence, based on estimation of non-physical distance such as recombination frequencies.",Linkage map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1279,Sequence map,,"A map of genetic markers in a contiguous, assembled genomic sequence, with the sizes and separation of markers measured in base pairs.|A sequence map typically includes annotation on significant subsequences such as contigs, haplotypes and genes. The contigs shown will (typically) be a set of small overlapping clones representing a complete chromosomal segment.",FALSE,,,http://edamontology.org/data_1280,,beta12orEarlier,,,,,,,,,,,,data_1279,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A map of genetic markers in a contiguous, assembled genomic sequence, with the sizes and separation of markers measured in base pairs.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1280,Physical map,,"A map of DNA (linear or circular) annotated with physical features or landmarks such as restriction sites, cloned DNA fragments, genes or genetic markers, along with the physical distances between them.|Distance in a physical map is measured in base pairs. A physical map might be ordered relative to a reference map (typically a genetic map) in the process of genome sequencing.",FALSE,,,http://edamontology.org/data_1274,,beta12orEarlier,,,,,,,,,,,,data_1280,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A map of DNA (linear or circular) annotated with physical features or landmarks such as restriction sites, cloned DNA fragments, genes or genetic markers, along with the physical distances between them.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1281,Sequence signature map,,"Image of a sequence with matches to signatures, motifs or profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1281,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Image of a sequence with matches to signatures, motifs or profiles.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2969,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1283,Cytogenetic map,Cytogenic map|Chromosome map|Cytologic map,"A map showing banding patterns derived from direct observation of a stained chromosome.|This is the lowest-resolution physical map and can provide only rough estimates of physical (base pair) distances.  Like a genetic map, they are limited to genetic markers of traits observable only in whole organisms.",FALSE,,,http://edamontology.org/data_1280,,beta12orEarlier,,,,,,,,,,,,data_1283,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A map showing banding patterns derived from direct observation of a stained chromosome.,Cytogenic map|Chromosome map|Cytologic map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1284,DNA transduction map,,A gene map showing distances between loci based on relative cotransduction frequencies.,FALSE,,,http://edamontology.org/data_1278,,beta12orEarlier,,,,,,,,,,,,data_1284,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A gene map showing distances between loci based on relative cotransduction frequencies.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1285,Gene map,,"Sequence map of a single gene annotated with genetic features such as introns, exons, untranslated regions, polyA signals, promoters, enhancers and (possibly) mutations defining alleles of a gene.",FALSE,,,http://edamontology.org/data_1279,,beta12orEarlier,,,,,,,,,,,,data_1285,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sequence map of a single gene annotated with genetic features such as introns, exons, untranslated regions, polyA signals, promoters, enhancers and (possibly) mutations defining alleles of a gene.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1286,Plasmid map,,Sequence map of a plasmid (circular DNA).,FALSE,,,http://edamontology.org/data_1279,,beta12orEarlier,,,,,,,,,,,,data_1286,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence map of a plasmid (circular DNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1288,Genome map,,Sequence map of a whole genome.,FALSE,,,http://edamontology.org/data_1279,,beta12orEarlier,,,,,,,,,,,,data_1288,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence map of a whole genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1289,Restriction map,,Image of the restriction enzyme cleavage sites (restriction sites) in a nucleic acid sequence.,FALSE,,,http://edamontology.org/data_1279|http://edamontology.org/data_2969,,beta12orEarlier,,,,,,,,,,,,data_1289,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image of the restriction enzyme cleavage sites (restriction sites) in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1290,InterPro compact match image,,"Image showing matches between protein sequence(s) and InterPro Entries.|The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself. Each protein is represented as a scaled horizontal line with colored bars indicating the position of the matches.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1290,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image showing matches between protein sequence(s) and InterPro Entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2969,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1291,InterPro detailed match image,,"Image showing detailed information on matches between protein sequence(s) and InterPro Entries.|The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1291,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image showing detailed information on matches between protein sequence(s) and InterPro Entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2969,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1292,InterPro architecture image,,"Image showing the architecture of InterPro domains in a protein sequence.|The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself. Domain architecture is shown as a series of non-overlapping domains in the protein.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1292,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image showing the architecture of InterPro domains in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2969,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1293,SMART protein schematic,,SMART protein schematic in PNG format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1293,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2969,,,,,SMART protein schematic in PNG format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1294,GlobPlot domain image,,Images based on GlobPlot prediction of intrinsic disordered regions and globular domains in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1294,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Images based on GlobPlot prediction of intrinsic disordered regions and globular domains in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2969,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1298,Sequence motif matches,,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1298,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0858,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1299,Sequence features (repeats),,"Location of short repetitive subsequences (repeat sequences) in (typically nucleotide) sequences.|The report might include derived data map such as classification, annotation, organisation, periodicity etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1299,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1255,,,,,Location of short repetitive subsequences (repeat sequences) in (typically nucleotide) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1300,Gene and transcript structure (report),,"A report on predicted or actual gene structure, regions which make an RNA product and features such as promoters, coding regions, splice sites etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1300,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,"A report on predicted or actual gene structure, regions which make an RNA product and features such as promoters, coding regions, splice sites etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1301,Mobile genetic elements,,regions of a nucleic acid sequence containing mobile genetic elements.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1301,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,regions of a nucleic acid sequence containing mobile genetic elements.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1302,Nucleic acid features report (PolyA signal or site),,regions or sites in a eukaryotic and eukaryotic viral RNA sequence which directs endonuclease cleavage or polyadenylation of an RNA transcript.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,regions or sites in a eukaryotic and eukaryotic viral RNA sequence which directs endonuclease cleavage or polyadenylation of an RNA transcript.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1303,Nucleic acid features (quadruplexes),,A report on quadruplex-forming motifs in a nucleotide sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1303,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3128,,,,,A report on quadruplex-forming motifs in a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1304,Nucleic acid features report (CpG island and isochore),,CpG rich regions (isochores) in a nucleotide sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CpG rich regions (isochores) in a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1305,Nucleic acid features report (restriction sites),,restriction enzyme recognition sites (restriction sites) in a nucleic acid sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,restriction enzyme recognition sites (restriction sites) in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1306,Nucleosome exclusion sequences,,Report on nucleosome formation potential or exclusion sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1306,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report on nucleosome formation potential or exclusion sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1307,Nucleic acid features report (splice sites),,splice sites in a nucleotide sequence or alternative RNA splicing events.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1307,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,splice sites in a nucleotide sequence or alternative RNA splicing events.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1308,Nucleic acid features report (matrix/scaffold attachment sites),,matrix/scaffold attachment regions (MARs/SARs) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,matrix/scaffold attachment regions (MARs/SARs) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1309,Gene features (exonic splicing enhancer),,A report on exonic splicing enhancers (ESE) in an exon.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1309,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on exonic splicing enhancers (ESE) in an exon.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1310,Nucleic acid features (microRNA),,"A report on microRNA sequence (miRNA) or precursor, microRNA targets, miRNA binding sites in an RNA sequence etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1310,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"A report on microRNA sequence (miRNA) or precursor, microRNA targets, miRNA binding sites in an RNA sequence etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1311,Gene features report (operon),,"operons (operators, promoters and genes) from a bacterial genome.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1311,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"operons (operators, promoters and genes) from a bacterial genome.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1312,Nucleic acid features report (promoters),,"whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in a DNA sequence.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1312,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in a DNA sequence.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1313,Coding region,,"protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1313,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1314,Gene features (SECIS element),,A report on selenocysteine insertion sequence (SECIS) element in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1314,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,A report on selenocysteine insertion sequence (SECIS) element in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1315,Transcription factor binding sites,,transcription factor binding sites (TFBS) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1315,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,transcription factor binding sites (TFBS) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1321,Protein features (sites),,"A report on predicted or known key residue positions (sites) in a protein sequence, such as binding or functional sites.|Use this concept for collections of specific sites which are not necessarily contiguous, rather than contiguous stretches of amino acids.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1321,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1277,,,,,"A report on predicted or known key residue positions (sites) in a protein sequence, such as binding or functional sites.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1322,Protein features report (signal peptides),,signal peptides or signal peptide cleavage sites in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1322,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,signal peptides or signal peptide cleavage sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1323,Protein features report (cleavage sites),,cleavage sites (for a proteolytic enzyme or agent) in a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1323,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,cleavage sites (for a proteolytic enzyme or agent) in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1324,Protein features (post-translation modifications),,"post-translation modifications in a protein sequence, typically describing the specific sites involved.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1324,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"post-translation modifications in a protein sequence, typically describing the specific sites involved.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1325,Protein features report (active sites),,catalytic residues (active site) of an enzyme.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1325,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,catalytic residues (active site) of an enzyme.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1326,Protein features report (binding sites),,"ligand-binding (non-catalytic) residues of a protein, such as sites that bind metal, prosthetic groups or lipids.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1326,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"ligand-binding (non-catalytic) residues of a protein, such as sites that bind metal, prosthetic groups or lipids.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1327,Protein features (epitopes),,"A report on antigenic determinant sites (epitopes) in proteins, from sequence and / or structural data.|Epitope mapping is commonly done during vaccine design.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1327,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on antigenic determinant sites (epitopes) in proteins, from sequence and / or structural data.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1328,Protein features report (nucleic acid binding sites),,RNA and DNA-binding proteins and binding sites in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1328,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA and DNA-binding proteins and binding sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1329,MHC Class I epitopes report,,A report on epitopes that bind to MHC class I molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1329,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1277,,,,,A report on epitopes that bind to MHC class I molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1330,MHC Class II epitopes report,,A report on predicted epitopes that bind to MHC class II molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1330,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1277,,,,,A report on predicted epitopes that bind to MHC class II molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1331,Protein features (PEST sites),,A report or plot of PEST sites in a protein sequence.|'PEST' motifs target proteins for proteolytic degradation and reduce the half-lives of proteins dramatically.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1331,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report or plot of PEST sites in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1338,Sequence database hits scores list,,Scores from a sequence database search (for example a BLAST search).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1338,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0857,,,,,Scores from a sequence database search (for example a BLAST search).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1339,Sequence database hits alignments list,,Alignments from a sequence database search (for example a BLAST search).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1339,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0857,,,,,Alignments from a sequence database search (for example a BLAST search).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1340,Sequence database hits evaluation data,,A report on the evaluation of the significance of sequence similarity scores from a sequence database search (for example a BLAST search).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1340,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0857,,,,,A report on the evaluation of the significance of sequence similarity scores from a sequence database search (for example a BLAST search).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1344,MEME motif alphabet,,Alphabet for the motifs (patterns) that MEME will search for.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1344,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0950,,,,,Alphabet for the motifs (patterns) that MEME will search for.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1345,MEME background frequencies file,,MEME background frequencies file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1345,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0950,,,,,MEME background frequencies file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1346,MEME motifs directive file,,File of directives for ordering and spacing of MEME motifs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1346,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0950,,,,,File of directives for ordering and spacing of MEME motifs.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1347,Dirichlet distribution,,Dirichlet distribution used by hidden Markov model analysis programs.,FALSE,,,http://edamontology.org/data_0950,,beta12orEarlier,,,,,,,,,,,,data_1347,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Dirichlet distribution used by hidden Markov model analysis programs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1348,HMM emission and transition counts,,"Emission and transition counts of a hidden Markov model, generated once HMM has been determined, for example after residues/gaps have been assigned to match, delete and insert states.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1348,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3355|http://edamontology.org/data_3354,,,,,"Emission and transition counts of a hidden Markov model, generated once HMM has been determined, for example after residues/gaps have been assigned to match, delete and insert states.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1352,Regular expression,,Regular expression pattern.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_1352,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Regular expression pattern.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1353,Sequence motif,,Any specific or conserved pattern (typically expressed as a regular expression) in a molecular sequence.,FALSE,,,http://edamontology.org/data_0860,,beta12orEarlier,,,,,,,,,,,,data_1353,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any specific or conserved pattern (typically expressed as a regular expression) in a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1354,Sequence profile,,Some type of statistical model representing a (typically multiple) sequence alignment.,FALSE,,,http://edamontology.org/data_0860,,beta12orEarlier,,,,,,,,,,,,data_1354,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some type of statistical model representing a (typically multiple) sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1355,Protein signature,Protein site signature|Protein repeat signature|Protein family signature|Protein domain signature|InterPro entry|Protein region signature,An informative report about a specific or conserved protein sequence pattern.,FALSE,,,http://edamontology.org/data_2762,,beta12orEarlier,,,,,,,,,,,,data_1355,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report about a specific or conserved protein sequence pattern.,,Protein site signature|Protein repeat signature|Protein family signature|Protein domain signature|InterPro entry|Protein region signature,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1358,Prosite nucleotide pattern,,A nucleotide regular expression pattern from the Prosite database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1358,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1353,,,,,A nucleotide regular expression pattern from the Prosite database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1359,Prosite protein pattern,,A protein regular expression pattern from the Prosite database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1359,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1353,,,,,A protein regular expression pattern from the Prosite database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1361,Position frequency matrix,PFM,A profile (typically representing a sequence alignment) that is a simple matrix of nucleotide (or amino acid) counts per position.,FALSE,,,http://edamontology.org/data_2854,,beta12orEarlier,,,,,,,,,,,,data_1361,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A profile (typically representing a sequence alignment) that is a simple matrix of nucleotide (or amino acid) counts per position.,PFM,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1362,Position weight matrix,PWM,A profile (typically representing a sequence alignment) that is weighted matrix of nucleotide (or amino acid) counts per position.|Contributions of individual sequences to the matrix might be uneven (weighted).,FALSE,,,http://edamontology.org/data_2854,,beta12orEarlier,,,,,,,,,,,,data_1362,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A profile (typically representing a sequence alignment) that is weighted matrix of nucleotide (or amino acid) counts per position.,PWM,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1363,Information content matrix,ICM,A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.,FALSE,,,http://edamontology.org/data_2854,,beta12orEarlier,,,,,,,,,,,,data_1363,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position.,ICM,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1364,Hidden Markov model,HMM,"A statistical Markov model of a system which is assumed to be a Markov process with unobserved (hidden) states.  For example, a hidden Markov model representation of a set or alignment of sequences.",FALSE,,,http://edamontology.org/data_0950|http://edamontology.org/data_1354,,beta12orEarlier,,,,,,,,,,,,data_1364,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A statistical Markov model of a system which is assumed to be a Markov process with unobserved (hidden) states.  For example, a hidden Markov model representation of a set or alignment of sequences.",HMM,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1365,Fingerprint,,One or more fingerprints (sequence classifiers) as used in the PRINTS database.,FALSE,,,http://edamontology.org/data_2854,,beta12orEarlier,,,,,,,,,,,,data_1365,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,One or more fingerprints (sequence classifiers) as used in the PRINTS database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1368,Domainatrix signature,,A protein signature of the type used in the EMBASSY Signature package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1368,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1354,,,,,A protein signature of the type used in the EMBASSY Signature package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1371,HMMER NULL hidden Markov model,,NULL hidden Markov model representation used by the HMMER package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1371,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1364,,,,,NULL hidden Markov model representation used by the HMMER package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1372,Protein family signature,,A protein family signature (sequence classifier) from the InterPro database.|Protein family signatures cover all domains in the matching proteins and span >80% of the protein length and with no adjacent protein domain signatures or protein region signatures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1372,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1355,,,,,A protein family signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1373,Protein domain signature,,A protein domain signature (sequence classifier) from the InterPro database.|Protein domain signatures identify structural or functional domains or other units with defined boundaries.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1373,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1355,,,,,A protein domain signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1374,Protein region signature,,A protein region signature (sequence classifier) from the InterPro database.|A protein region signature defines a region which cannot be described as a protein family or domain signature.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1374,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1355,,,,,A protein region signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1375,Protein repeat signature,,"A protein repeat signature (sequence classifier) from the InterPro database.|A protein repeat signature is a repeated protein motif, that is not in single copy expected to independently fold into a globular domain.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1375,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1355,,,,,A protein repeat signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1376,Protein site signature,,A protein site signature (sequence classifier) from the InterPro database.|A protein site signature is a classifier for a specific site in a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1376,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1355,,,,,A protein site signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1377,Protein conserved site signature,,"A protein conserved site signature (sequence classifier) from the InterPro database.|A protein conserved site signature is any short sequence pattern that may contain one or more unique residues and is cannot be described as a active site, binding site or post-translational modification.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1377,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2071,,,,,A protein conserved site signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1378,Protein active site signature,,"A protein active site signature (sequence classifier) from the InterPro database.|A protein active site signature corresponds to an enzyme catalytic pocket. An active site typically includes non-contiguous residues, therefore multiple signatures may be required to describe an active site. ; residues involved in enzymatic reactions for which mutational data is typically available.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1378,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2071,,,,,A protein active site signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1379,Protein binding site signature,,"A protein binding site signature (sequence classifier) from the InterPro database.|A protein binding site signature corresponds to a site that reversibly binds chemical compounds, which are not themselves substrates of the enzymatic reaction. This includes enzyme cofactors and residues involved in electron transport or protein structure modification.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1379,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2071,,,,,A protein binding site signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1380,Protein post-translational modification signature,,"A protein post-translational modification signature (sequence classifier) from the InterPro database.|A protein post-translational modification signature corresponds to sites that undergo modification of the primary structure, typically to activate or de-activate a function. For example, methylation, sumoylation, glycosylation etc. The modification might be permanent or reversible.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1380,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2071,,,,,A protein post-translational modification signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1381,Sequence alignment (pair),,Alignment of exactly two molecular sequences.,FALSE,,,http://edamontology.org/data_0863,,beta12orEarlier,,,,,,,,,,,,data_1381,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of exactly two molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1382,Sequence alignment (multiple),,Alignment of more than two molecular sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1382,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0863,,,,,Alignment of more than two molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1383,Sequence alignment (nucleic acid),,Alignment of multiple nucleotide sequences.,FALSE,,,http://edamontology.org/data_0863,,beta12orEarlier,,,,,,,,,,,,data_1383,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of multiple nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1384,Sequence alignment (protein),,Alignment of multiple protein sequences.,FALSE,,,http://edamontology.org/data_3154|http://edamontology.org/data_0863,,beta12orEarlier,,,,,,,,,,,,data_1384,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of multiple protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1385,Sequence alignment (hybrid),,"Alignment of multiple molecular sequences of different types.|Hybrid sequence alignments include for example genomic DNA to EST, cDNA or mRNA.",FALSE,,,http://edamontology.org/data_0863,,beta12orEarlier,,,,,,,,,,,,data_1385,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of multiple molecular sequences of different types.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1386,Sequence alignment (nucleic acid pair),,Alignment of exactly two nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1386,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1383|http://edamontology.org/data_1381,,,,,Alignment of exactly two nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1387,Sequence alignment (protein pair),,Alignment of exactly two protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1387,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1384|http://edamontology.org/data_1381,,,,,Alignment of exactly two protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1388,Hybrid sequence alignment (pair),,Alignment of exactly two molecular sequences of different types.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1388,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1385,,,,,Alignment of exactly two molecular sequences of different types.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1389,Multiple nucleotide sequence alignment,,Alignment of more than two nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1389,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0863,,,,,Alignment of more than two nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1390,Multiple protein sequence alignment,,Alignment of more than two protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1390,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0863,,,,,Alignment of more than two protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1394,Alignment score or penalty,,A simple floating point number defining the penalty for opening or extending a gap in an alignment.,FALSE,,,http://edamontology.org/data_1772,,beta12orEarlier,,,,,,,,,,,,data_1394,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A simple floating point number defining the penalty for opening or extending a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1395,Score end gaps control,,Whether end gaps are scored or not.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1395,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Whether end gaps are scored or not.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1396,Aligned sequence order,,Controls the order of sequences in an output sequence alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1396,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Controls the order of sequences in an output sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1397,Gap opening penalty,,A penalty for opening a gap in an alignment.,FALSE,,,http://edamontology.org/data_2137,,beta12orEarlier,,,,,,,,,,,,data_1397,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A penalty for opening a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1398,Gap extension penalty,,A penalty for extending a gap in an alignment.,FALSE,,,http://edamontology.org/data_2137,,beta12orEarlier,,,,,,,,,,,,data_1398,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A penalty for extending a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1399,Gap separation penalty,,A penalty for gaps that are close together in an alignment.,FALSE,,,http://edamontology.org/data_2137,,beta12orEarlier,,,,,,,,,,,,data_1399,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A penalty for gaps that are close together in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1400,Terminal gap penalty,,"A penalty for gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1400,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1411|http://edamontology.org/data_1410,,,,,"A penalty for gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1401,Match reward score,,The score for a 'match' used in various sequence database search applications with simple scoring schemes.,FALSE,,,http://edamontology.org/data_1394,,beta12orEarlier,,,,,,,,,,,,data_1401,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The score for a 'match' used in various sequence database search applications with simple scoring schemes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1402,Mismatch penalty score,,The score (penalty) for a 'mismatch' used in various alignment and sequence database search applications with simple scoring schemes.,FALSE,,,http://edamontology.org/data_1394,,beta12orEarlier,,,,,,,,,,,,data_1402,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The score (penalty) for a 'mismatch' used in various alignment and sequence database search applications with simple scoring schemes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1403,Drop off score,,This is the threshold drop in score at which extension of word alignment is halted.,FALSE,,,http://edamontology.org/data_1394,,beta12orEarlier,,,,,,,,,,,,data_1403,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,This is the threshold drop in score at which extension of word alignment is halted.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1404,Gap opening penalty (integer),,A simple floating point number defining the penalty for opening a gap in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1404,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1397,,,,,A simple floating point number defining the penalty for opening a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1405,Gap opening penalty (float),,A simple floating point number defining the penalty for opening a gap in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1405,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1397,,,,,A simple floating point number defining the penalty for opening a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1406,Gap extension penalty (integer),,A simple floating point number defining the penalty for extending a gap in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1406,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1398,,,,,A simple floating point number defining the penalty for extending a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1407,Gap extension penalty (float),,A simple floating point number defining the penalty for extending a gap in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1407,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1398,,,,,A simple floating point number defining the penalty for extending a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1408,Gap separation penalty (integer),,A simple floating point number defining the penalty for gaps that are close together in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1408,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1399,,,,,A simple floating point number defining the penalty for gaps that are close together in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1409,Gap separation penalty (float),,A simple floating point number defining the penalty for gaps that are close together in an alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1409,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1399,,,,,A simple floating point number defining the penalty for gaps that are close together in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1410,Terminal gap opening penalty,,"A number defining the penalty for opening gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",FALSE,,,http://edamontology.org/data_1397,,beta12orEarlier,,,,,,,,,,,,data_1410,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A number defining the penalty for opening gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1411,Terminal gap extension penalty,,"A number defining the penalty for extending gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",FALSE,,,http://edamontology.org/data_1398,,beta12orEarlier,,,,,,,,,,,,data_1411,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A number defining the penalty for extending gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1412,Sequence identity,,Sequence identity is the number (%) of matches (identical characters) in positions from an alignment of two molecular sequences.,FALSE,,,http://edamontology.org/data_0865,,beta12orEarlier,,,,,,,,,,,,data_1412,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence identity is the number (%) of matches (identical characters) in positions from an alignment of two molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1413,Sequence similarity,,"Sequence similarity is the similarity (expressed as a percentage) of two molecular sequences calculated from their alignment, a scoring matrix for scoring characters substitutions and penalties for gap insertion and extension.|Data Type is float probably.",FALSE,,,http://edamontology.org/data_0865,,beta12orEarlier,,,,,,,,,,,,data_1413,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sequence similarity is the similarity (expressed as a percentage) of two molecular sequences calculated from their alignment, a scoring matrix for scoring characters substitutions and penalties for gap insertion and extension.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1414,Sequence alignment metadata (quality report),,Data on molecular sequence alignment quality (estimated accuracy).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1414,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,Data on molecular sequence alignment quality (estimated accuracy).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1415,Sequence alignment report (site conservation),,"Data on character conservation in a molecular sequence alignment.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation. Use this concept for calculated substitution rates, relative site variability, data on sites with biased properties, highly conserved or very poorly conserved sites, regions, blocks etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1415,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2161,,,,,Data on character conservation in a molecular sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1416,Sequence alignment report (site correlation),,"Data on correlations between sites in a molecular sequence alignment, typically to identify possible covarying positions and predict contacts or structural constraints in protein structures.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1416,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,"Data on correlations between sites in a molecular sequence alignment, typically to identify possible covarying positions and predict contacts or structural constraints in protein structures.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1417,Sequence-profile alignment (Domainatrix signature),,Alignment of molecular sequences to a Domainatrix signature (representing a sequence alignment).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1417,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0869,,,,,Alignment of molecular sequences to a Domainatrix signature (representing a sequence alignment).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1418,Sequence-profile alignment (HMM),,Alignment of molecular sequence(s) to a hidden Markov model(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1418,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0869,,,,,Alignment of molecular sequence(s) to a hidden Markov model(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1420,Sequence-profile alignment (fingerprint),,Alignment of molecular sequences to a protein fingerprint from the PRINTS database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1420,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0869,,,,,Alignment of molecular sequences to a protein fingerprint from the PRINTS database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1426,Phylogenetic continuous quantitative data,Quantitative traits|Phylogenetic continuous quantitative characters,Continuous quantitative data that may be read during phylogenetic tree calculation.,FALSE,,,http://edamontology.org/data_0871,,beta12orEarlier,,,,,,,,,,,,data_1426,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Continuous quantitative data that may be read during phylogenetic tree calculation.,Quantitative traits|Phylogenetic continuous quantitative characters,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1427,Phylogenetic discrete data,Discrete characters|Phylogenetic discrete states|Discretely coded characters,Character data with discrete states that may be read during phylogenetic tree calculation.,FALSE,,,http://edamontology.org/data_0871,,beta12orEarlier,,,,,,,,,,,,data_1427,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Character data with discrete states that may be read during phylogenetic tree calculation.,Discrete characters|Phylogenetic discrete states|Discretely coded characters,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1428,Phylogenetic character cliques,Phylogenetic report (cliques),"One or more cliques of mutually compatible characters that are generated, for example from analysis of discrete character data, and are used to generate a phylogeny.",FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_1428,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"One or more cliques of mutually compatible characters that are generated, for example from analysis of discrete character data, and are used to generate a phylogeny.",Phylogenetic report (cliques),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1429,Phylogenetic invariants,Phylogenetic report (invariants),Phylogenetic invariants data for testing alternative tree topologies.,FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_1429,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic invariants data for testing alternative tree topologies.,Phylogenetic report (invariants),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1438,Phylogenetic report,,"A report of data concerning or derived from a phylogenetic tree, or from comparing two or more phylogenetic trees.|This is a broad data type and is used  for example for reports on confidence, shape or stratigraphic (age) data derived from phylogenetic tree analysis.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1438,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2523,,,,,"A report of data concerning or derived from a phylogenetic tree, or from comparing two or more phylogenetic trees.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1439,DNA substitution model,Phylogenetic tree report (DNA substitution model)|Substitution model|Sequence alignment report (DNA substitution model),"A model of DNA substitution that explains a DNA sequence alignment, derived from phylogenetic tree analysis.",FALSE,,,http://edamontology.org/data_0950,,beta12orEarlier,,,,,,,,,,,,data_1439,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A model of DNA substitution that explains a DNA sequence alignment, derived from phylogenetic tree analysis.",Phylogenetic tree report (DNA substitution model)|Substitution model|Sequence alignment report (DNA substitution model),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1440,Phylogenetic tree report (tree shape),,Data about the shape of a phylogenetic tree.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1440,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2523,,,,,Data about the shape of a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1441,Phylogenetic tree report (tree evaluation),,Data on the confidence of a phylogenetic tree.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1441,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2523,,,,,Data on the confidence of a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1442,Phylogenetic tree distances,Phylogenetic tree report (tree distances),"Distances, such as Branch Score distance, between two or more phylogenetic trees.",FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_1442,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Distances, such as Branch Score distance, between two or more phylogenetic trees.",Phylogenetic tree report (tree distances),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1443,Phylogenetic tree report (tree stratigraphic),,Molecular clock and stratigraphic (age) data derived from phylogenetic tree analysis.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1443,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2523,,,,,Molecular clock and stratigraphic (age) data derived from phylogenetic tree analysis.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1444,Phylogenetic character contrasts,Phylogenetic report (character contrasts),"Independent contrasts for characters used in a phylogenetic tree, or covariances, regressions and correlations between characters for those contrasts.",FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_1444,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Independent contrasts for characters used in a phylogenetic tree, or covariances, regressions and correlations between characters for those contrasts.",Phylogenetic report (character contrasts),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1446,Comparison matrix (integers),,Matrix of integer numbers for sequence comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1446,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0874,,,,,Matrix of integer numbers for sequence comparison.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1447,Comparison matrix (floats),,Matrix of floating point numbers for sequence comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1447,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0874,,,,,Matrix of floating point numbers for sequence comparison.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1448,Comparison matrix (nucleotide),Nucleotide substitution matrix,Matrix of integer or floating point numbers for nucleotide comparison.,FALSE,,,http://edamontology.org/data_0874,,beta12orEarlier,,,,,,,,,,,,data_1448,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Matrix of integer or floating point numbers for nucleotide comparison.,Nucleotide substitution matrix,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1449,Comparison matrix (amino acid),Amino acid comparison matrix|Amino acid substitution matrix,Matrix of integer or floating point numbers for amino acid comparison.,FALSE,,,http://edamontology.org/data_2016|http://edamontology.org/data_0874,,beta12orEarlier,,,,,,,,,,,,data_1449,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Matrix of integer or floating point numbers for amino acid comparison.,Amino acid comparison matrix|Amino acid substitution matrix,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1450,Nucleotide comparison matrix (integers),Nucleotide substitution matrix (integers),Matrix of integer numbers for nucleotide comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1450,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1448,,,,,Matrix of integer numbers for nucleotide comparison.,Nucleotide substitution matrix (integers),,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1451,Nucleotide comparison matrix (floats),Nucleotide substitution matrix (floats),Matrix of floating point numbers for nucleotide comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1451,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1448,,,,,Matrix of floating point numbers for nucleotide comparison.,Nucleotide substitution matrix (floats),,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1452,Amino acid comparison matrix (integers),,Matrix of integer numbers for amino acid comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1452,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1449,,,,,Matrix of integer numbers for amino acid comparison.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1453,Amino acid comparison matrix (floats),,Matrix of floating point numbers for amino acid comparison.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1453,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1449,,,,,Matrix of floating point numbers for amino acid comparison.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1456,Protein features report (membrane regions),,"trans- or intra-membrane regions of a protein, typically describing physicochemical properties of the secondary structure elements.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1456,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"trans- or intra-membrane regions of a protein, typically describing physicochemical properties of the secondary structure elements.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1459,Nucleic acid structure,,3D coordinate and associated data for a nucleic acid tertiary (3D) structure.,FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_1459,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a nucleic acid tertiary (3D) structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1460,Protein structure,Protein structures,3D coordinate and associated data for a protein tertiary (3D) structure.,FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_1460,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a protein tertiary (3D) structure.,Protein structures,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1461,Protein-ligand complex,,"The structure of a protein in complex with a ligand, typically a small molecule such as an enzyme substrate or cofactor, but possibly another macromolecule.|This includes interactions of proteins with atoms, ions and small molecules or macromolecules such as nucleic acids or other polypeptides.  For stable inter-polypeptide interactions use 'Protein complex' instead.",FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1461,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The structure of a protein in complex with a ligand, typically a small molecule such as an enzyme substrate or cofactor, but possibly another macromolecule.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1462,Carbohydrate structure,,3D coordinate and associated data for a carbohydrate (3D) structure.,FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_1462,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a carbohydrate (3D) structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1463,Small molecule structure,CHEBI:23367,"3D coordinate and associated data for the (3D) structure of a small molecule, such as any common chemical compound.",FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_1463,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"3D coordinate and associated data for the (3D) structure of a small molecule, such as any common chemical compound.",,,CHEBI:23367,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1464,DNA structure,,3D coordinate and associated data for a DNA tertiary (3D) structure.,FALSE,,,http://edamontology.org/data_1459,,beta12orEarlier,,,,,,,,,,,,data_1464,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a DNA tertiary (3D) structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1465,RNA structure,,3D coordinate and associated data for an RNA tertiary (3D) structure.,FALSE,,,http://edamontology.org/data_1459,,beta12orEarlier,,,,,,,,,,,,data_1465,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for an RNA tertiary (3D) structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1466,tRNA structure,,"3D coordinate and associated data for a tRNA tertiary (3D) structure, including tmRNA, snoRNAs etc.",FALSE,,,http://edamontology.org/data_1465,,beta12orEarlier,,,,,,,,,,,,data_1466,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"3D coordinate and associated data for a tRNA tertiary (3D) structure, including tmRNA, snoRNAs etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1467,Protein chain,,3D coordinate and associated data for the tertiary (3D) structure of a polypeptide chain.,FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1467,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for the tertiary (3D) structure of a polypeptide chain.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1468,Protein domain,,3D coordinate and associated data for the tertiary (3D) structure of a protein domain.,FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1468,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for the tertiary (3D) structure of a protein domain.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1469,Protein structure (all atoms),,3D coordinate and associated data for a protein tertiary (3D) structure (all atoms).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1469,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1460,,,,,3D coordinate and associated data for a protein tertiary (3D) structure (all atoms).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1470,C-alpha trace,Protein structure (C-alpha atoms),3D coordinate and associated data for a protein tertiary (3D) structure (typically C-alpha atoms only).|C-beta atoms from amino acid side-chains may be included.,FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1470,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a protein tertiary (3D) structure (typically C-alpha atoms only).,Protein structure (C-alpha atoms),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1471,Protein chain (all atoms),,3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (all atoms).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1471,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1467,,,,,3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (all atoms).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1472,Protein chain (C-alpha atoms),,3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (typically C-alpha atoms only).|C-beta atoms from amino acid side-chains may be included.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1472,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1467,,,,,3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (typically C-alpha atoms only).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1473,Protein domain (all atoms),,3D coordinate and associated data for a protein domain tertiary (3D) structure (all atoms).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1473,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1468,,,,,3D coordinate and associated data for a protein domain tertiary (3D) structure (all atoms).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1474,Protein domain (C-alpha atoms),,3D coordinate and associated data for a protein domain tertiary (3D) structure (typically C-alpha atoms only).|C-beta atoms from amino acid side-chains may be included.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1474,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1468,,,,,3D coordinate and associated data for a protein domain tertiary (3D) structure (typically C-alpha atoms only).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1479,Structure alignment (pair),Pair structure alignment,Alignment (superimposition) of exactly two molecular tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_0886,,beta12orEarlier,,,,,,,,,,,,data_1479,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment (superimposition) of exactly two molecular tertiary (3D) structures.,Pair structure alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1480,Structure alignment (multiple),,Alignment (superimposition) of more than two molecular tertiary (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1480,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0886,,,,,Alignment (superimposition) of more than two molecular tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1481,Structure alignment (protein),Protein structure alignment,Alignment (superimposition) of protein tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_3154|http://edamontology.org/data_0886,,beta12orEarlier,,,,,,,,,,,,data_1481,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment (superimposition) of protein tertiary (3D) structures.,Protein structure alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1482,Structure alignment (nucleic acid),Nucleic acid structure alignment,Alignment (superimposition) of nucleic acid tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_0886,,beta12orEarlier,,,,,,,,,,,,data_1482,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment (superimposition) of nucleic acid tertiary (3D) structures.,Nucleic acid structure alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1483,Structure alignment (protein pair),,Alignment (superimposition) of exactly two protein tertiary (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1483,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481|http://edamontology.org/data_1479,,,,,Alignment (superimposition) of exactly two protein tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1484,Multiple protein tertiary structure alignment,,Alignment (superimposition) of more than two protein tertiary (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1484,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of more than two protein tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1485,Structure alignment (protein all atoms),,Alignment (superimposition) of protein tertiary (3D) structures (all atoms considered).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1485,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of protein tertiary (3D) structures (all atoms considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1486,Structure alignment (protein C-alpha atoms),,Alignment (superimposition) of protein tertiary (3D) structures (typically C-alpha atoms only considered).|C-beta atoms from amino acid side-chains may be considered.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1486,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of protein tertiary (3D) structures (typically C-alpha atoms only considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1487,Pairwise protein tertiary structure alignment (all atoms),,Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1487,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1488,Pairwise protein tertiary structure alignment (C-alpha atoms),,Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered).|C-beta atoms from amino acid side-chains may be included.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1488,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1489,Multiple protein tertiary structure alignment (all atoms),,Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1489,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1490,Multiple protein tertiary structure alignment (C-alpha atoms),,Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered).|C-beta atoms from amino acid side-chains may be included.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1490,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1481,,,,,Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1491,Structure alignment (nucleic acid pair),,Alignment (superimposition) of exactly two nucleic acid tertiary (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1491,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1479|http://edamontology.org/data_1482,,,,,Alignment (superimposition) of exactly two nucleic acid tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1492,Multiple nucleic acid tertiary structure alignment,,Alignment (superimposition) of more than two nucleic acid tertiary (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1492,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1482,,,,,Alignment (superimposition) of more than two nucleic acid tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1493,Structure alignment (RNA),RNA structure alignment,Alignment (superimposition) of RNA tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_1482,,beta12orEarlier,,,,,,,,,,,,data_1493,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment (superimposition) of RNA tertiary (3D) structures.,RNA structure alignment,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1494,Structural transformation matrix,,"Matrix to transform (rotate/translate) 3D coordinates, typically the transformation necessary to superimpose two molecular structures.",FALSE,,,http://edamontology.org/data_2082,,beta12orEarlier,,,,,,,,,,,,data_1494,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Matrix to transform (rotate/translate) 3D coordinates, typically the transformation necessary to superimpose two molecular structures.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1495,DaliLite hit table,,"DaliLite hit table of protein chain tertiary structure alignment data.|The significant and top-scoring hits for regions of the compared structures is shown. Data such as Z-Scores, number of aligned residues, root-mean-square deviation (RMSD) of atoms and sequence identity are given.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1495,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0887,,,,,DaliLite hit table of protein chain tertiary structure alignment data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1496,Molecular similarity score,,A score reflecting structural similarities of two molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1496,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0888,,,,,A score reflecting structural similarities of two molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1497,Root-mean-square deviation,RMSD,Root-mean-square deviation (RMSD) is calculated to measure the average distance between superimposed macromolecular coordinates.,FALSE,,,http://edamontology.org/data_0888,,beta12orEarlier,,,,,,,,,,,,data_1497,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Root-mean-square deviation (RMSD) is calculated to measure the average distance between superimposed macromolecular coordinates.,RMSD,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1498,Tanimoto similarity score,,"A measure of the similarity between two ligand fingerprints.|A ligand fingerprint is derived from ligand structural data from a Protein DataBank file. It reflects the elements or groups present or absent, covalent bonds and bond orders and the bonded environment in terms of SATIS codes and BLEEP atom types.",FALSE,,,http://edamontology.org/data_0888,,beta12orEarlier,,,,,,,,,,,,data_1498,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A measure of the similarity between two ligand fingerprints.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1499,3D-1D scoring matrix,,A matrix of 3D-1D scores reflecting the probability of amino acids to occur in different tertiary structural environments.,FALSE,,,http://edamontology.org/data_0892,,beta12orEarlier,,,,,,,,,,,,data_1499,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A matrix of 3D-1D scores reflecting the probability of amino acids to occur in different tertiary structural environments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1501,Amino acid index,,A table of 20 numerical values which quantify a property (e.g. physicochemical or biochemical) of the common amino acids.,FALSE,,,http://edamontology.org/data_2016|http://edamontology.org/data_2082,,beta12orEarlier,,,,,,,,,,,,data_1501,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A table of 20 numerical values which quantify a property (e.g. physicochemical or biochemical) of the common amino acids.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1502,Amino acid index (chemical classes),Chemical classes (amino acids),"Chemical classification (small, aliphatic, aromatic, polar, charged etc) of amino acids.",FALSE,,,http://edamontology.org/data_1501,,beta12orEarlier,,,,,,,,,,,,data_1502,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Chemical classification (small, aliphatic, aromatic, polar, charged etc) of amino acids.",Chemical classes (amino acids),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1503,Amino acid pair-wise contact potentials,Contact potentials (amino acid pair-wise),Statistical protein contact potentials.,FALSE,,,http://edamontology.org/data_2016,,beta12orEarlier,,,,,,,,,,,,data_1503,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Statistical protein contact potentials.,Contact potentials (amino acid pair-wise),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1505,Amino acid index (molecular weight),Molecular weight (amino acids),Molecular weights of amino acids.,FALSE,,,http://edamontology.org/data_1501,,beta12orEarlier,,,,,,,,,,,,data_1505,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Molecular weights of amino acids.,Molecular weight (amino acids),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1506,Amino acid index (hydropathy),Hydropathy (amino acids),"Hydrophobic, hydrophilic or charge properties of amino acids.",FALSE,,,http://edamontology.org/data_1501,,beta12orEarlier,,,,,,,,,,,,data_1506,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Hydrophobic, hydrophilic or charge properties of amino acids.",Hydropathy (amino acids),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1507,Amino acid index (White-Wimley data),White-Wimley data (amino acids),Experimental free energy values for the water-interface and water-octanol transitions for the amino acids.,FALSE,,,http://edamontology.org/data_1501,,beta12orEarlier,,,,,,,,,,,,data_1507,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Experimental free energy values for the water-interface and water-octanol transitions for the amino acids.,White-Wimley data (amino acids),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1508,Amino acid index (van der Waals radii),van der Waals radii (amino acids),Van der Waals radii of atoms for different amino acid residues.,FALSE,,,http://edamontology.org/data_1501,,beta12orEarlier,,,,,,,,,,,,data_1508,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Van der Waals radii of atoms for different amino acid residues.,van der Waals radii (amino acids),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1509,Enzyme report,,An informative report on a specific enzyme.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1509,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,An informative report on a specific enzyme.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1517,Restriction enzyme report,,"An informative report on a specific restriction enzyme such as enzyme reference data.|This might include name of enzyme, organism, isoschizomers, methylation, source, suppliers, literature references, or data on restriction enzyme patterns such as name of enzyme, recognition site, length of pattern, number of cuts made by enzyme, details of blunt or sticky end cut etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1517,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,An informative report on a specific restriction enzyme such as enzyme reference data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1519,Peptide molecular weights,,"List of molecular weight(s) of one or more proteins or peptides, for example cut by proteolytic enzymes or reagents.|The report might include associated data such as frequency of peptide fragment molecular weights.",FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1519,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"List of molecular weight(s) of one or more proteins or peptides, for example cut by proteolytic enzymes or reagents.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1520,Peptide hydrophobic moment,,Report on the hydrophobic moment of a polypeptide sequence.|Hydrophobic moment is a peptides hydrophobicity measured for different angles of rotation.,FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1520,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report on the hydrophobic moment of a polypeptide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1521,Protein aliphatic index,,The aliphatic index of a protein.|The aliphatic index is the relative protein volume occupied by aliphatic side chains.,FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1521,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The aliphatic index of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1522,Protein sequence hydropathy plot,,"A protein sequence with annotation on hydrophobic or hydrophilic / charged regions, hydrophobicity plot etc.|Hydrophobic moment is a peptides hydrophobicity measured for different angles of rotation.",FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1522,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A protein sequence with annotation on hydrophobic or hydrophilic / charged regions, hydrophobicity plot etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1523,Protein charge plot,,A plot of the mean charge of the amino acids within a window of specified length as the window is moved along a protein sequence.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1523,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of the mean charge of the amino acids within a window of specified length as the window is moved along a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1524,Protein solubility,Protein solubility data,The solubility or atomic solvation energy of a protein sequence or structure.,FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1524,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The solubility or atomic solvation energy of a protein sequence or structure.,Protein solubility data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1525,Protein crystallizability,Protein crystallizability data,Data on the crystallizability of a protein sequence.,FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1525,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on the crystallizability of a protein sequence.,Protein crystallizability data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1526,Protein globularity,Protein globularity data,"Data on the stability, intrinsic disorder or globularity of a protein sequence.",FALSE,,,http://edamontology.org/data_2970,,beta12orEarlier,,,,,,,,,,,,data_1526,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data on the stability, intrinsic disorder or globularity of a protein sequence.",Protein globularity data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1527,Protein titration curve,,The titration curve of a protein.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1527,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The titration curve of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1528,Protein isoelectric point,,The isoelectric point of one proteins.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1528,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The isoelectric point of one proteins.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1529,Protein pKa value,,The pKa value of a protein.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1529,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The pKa value of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1530,Protein hydrogen exchange rate,,The hydrogen exchange rate of a protein.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1530,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The hydrogen exchange rate of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1531,Protein extinction coefficient,,The extinction coefficient of a protein.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1531,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The extinction coefficient of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1532,Protein optical density,,The optical density of a protein.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1532,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The optical density of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1533,Protein subcellular localisation,Protein report (subcellular localisation),"An informative report on protein subcellular localisation (nuclear, cytoplasmic, mitochondrial, chloroplast, plastid, membrane etc) or destination (exported / extracellular proteins).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1533,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,"An informative report on protein subcellular localisation (nuclear, cytoplasmic, mitochondrial, chloroplast, plastid, membrane etc) or destination (exported / extracellular proteins).",Protein report (subcellular localisation),,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1534,Peptide immunogenicity data,Peptide immunogenicity|Peptide immunogenicity report,"An report on allergenicity / immunogenicity of peptides and proteins.|This includes data on peptide ligands that elicit an immune response (immunogens), allergic cross-reactivity, predicted antigenicity (Hopp and Woods plot) etc. These data are useful in the development of peptide-specific antibodies or multi-epitope vaccines. Methods might use sequence data (for example motifs) and / or structural data.",FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1534,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An report on allergenicity / immunogenicity of peptides and proteins.,Peptide immunogenicity|Peptide immunogenicity report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1536,MHC peptide immunogenicity report,,A report on the immunogenicity of MHC class I or class II binding peptides.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1536,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1534,,,,,A report on the immunogenicity of MHC class I or class II binding peptides.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1537,Protein structure report,Protein structure report (domain)|Protein structure-derived report|Protein structural property|Protein property (structural)|Protein report (structure),"Annotation about, or structural information derived from, one or more specific protein 3D structure(s) or structural domains.|This includes for example reports on the surface properties (shape, hydropathy, electrostatic patches etc) of a protein structure, protein flexibility or motion, and protein architecture (spatial arrangement of secondary structure).",FALSE,,,http://edamontology.org/data_2085|http://edamontology.org/data_0896,,beta12orEarlier,,,,,,,,,,,,data_1537,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation about, or structural information derived from, one or more specific protein 3D structure(s) or structural domains.",Protein structure report (domain)|Protein structure-derived report|Protein structural property|Protein property (structural)|Protein report (structure),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1539,Protein structural quality report,Protein structure report (quality evaluation)|Protein structure validation report|Protein property (structural quality)|Protein report (structural quality),"Report on the quality of a protein three-dimensional model.|Model validation might involve checks for atomic packing, steric clashes, agreement with electron density maps etc.",FALSE,,,http://edamontology.org/data_1537,,beta12orEarlier,,,,,,,,,,,,data_1539,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report on the quality of a protein three-dimensional model.,Protein structure report (quality evaluation)|Protein structure validation report|Protein property (structural quality)|Protein report (structural quality),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1540,Protein non-covalent interactions report,,"Data on inter-atomic or inter-residue contacts, distances and interactions in protein structure(s) or on the interactions of protein atoms or residues with non-protein groups.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1540,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data on inter-atomic or inter-residue contacts, distances and interactions in protein structure(s) or on the interactions of protein atoms or residues with non-protein groups.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0906,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1541,Protein flexibility or motion report,,"Informative report on flexibility or motion of a protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1541,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1537,,,,,Informative report on flexibility or motion of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1542,Protein solvent accessibility report,,"Data on the solvent accessible or buried surface area of a protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation. This concept covers definitions of the protein surface, interior and interfaces, accessible and buried residues, surface accessible pockets, interior inaccessible cavities etc.",FALSE,,,http://edamontology.org/data_1537,,beta12orEarlier,,,,,,,,,,,,data_1542,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on the solvent accessible or buried surface area of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1543,Protein surface report,,"Data on the surface properties (shape, hydropathy, electrostatic patches etc) of a protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1543,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1537,,,,,"Data on the surface properties (shape, hydropathy, electrostatic patches etc) of a protein structure.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1544,Ramachandran plot,,Phi/psi angle data or a Ramachandran plot of a protein structure.,FALSE,,,http://edamontology.org/data_2991,,beta12orEarlier,,,,,,,,,,,,data_1544,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phi/psi angle data or a Ramachandran plot of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1545,Protein dipole moment,,Data on the net charge distribution (dipole moment) of a protein structure.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_1545,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on the net charge distribution (dipole moment) of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1546,Protein distance matrix,,A matrix of distances between amino acid residues (for example the C-alpha atoms) in a protein structure.,FALSE,,,http://edamontology.org/data_0906|http://edamontology.org/data_2855,,beta12orEarlier,,,,,,,,,,,,data_1546,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A matrix of distances between amino acid residues (for example the C-alpha atoms) in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1547,Protein contact map,,An amino acid residue contact map for a protein structure.,FALSE,,,http://edamontology.org/data_0906,,beta12orEarlier,,,,,,,,,,,,data_1547,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An amino acid residue contact map for a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1548,Protein residue 3D cluster,,Report on clusters of contacting residues in protein structures such as a key structural residue network.,FALSE,,,http://edamontology.org/data_0906,,beta12orEarlier,,,,,,,,,,,,data_1548,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report on clusters of contacting residues in protein structures such as a key structural residue network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1549,Protein hydrogen bonds,,Patterns of hydrogen bonding in protein structures.,FALSE,,,http://edamontology.org/data_0906,,beta12orEarlier,,,,,,,,,,,,data_1549,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Patterns of hydrogen bonding in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1550,Protein non-canonical interactions,,Non-canonical atomic interactions in protein structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1550,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1537,,,,,Non-canonical atomic interactions in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1553,CATH node,,"Information on a node from the CATH database.|The report (for example http://www.cathdb.info/cathnode/1.10.10.10) includes CATH code (of the node and upper levels in the hierarchy), classification text (of appropriate levels in hierarchy), list of child nodes, representative domain and other relevant data and links.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1553,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1554,SCOP node,,Information on a node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1554,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1555,EMBASSY domain classification,,"An EMBASSY domain classification file (DCF) of classification and other data for domains from SCOP or CATH, in EMBL-like format.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1555,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An EMBASSY domain classification file (DCF) of classification and other data for domains from SCOP or CATH, in EMBL-like format.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0907,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1556,CATH class,,Information on a protein 'class' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1556,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'class' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1557,CATH architecture,,Information on a protein 'architecture' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1557,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'architecture' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1558,CATH topology,,Information on a protein 'topology' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1558,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'topology' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1559,CATH homologous superfamily,,Information on a protein 'homologous superfamily' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1559,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'homologous superfamily' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1560,CATH structurally similar group,,Information on a protein 'structurally similar group' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1560,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'structurally similar group' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1561,CATH functional category,,Information on a protein 'functional category' node from the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1561,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a protein 'functional category' node from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1564,Protein fold recognition report,,"A report on known protein structural domains or folds that are recognised (identified) in protein sequence(s).|Methods use some type of mapping between sequence and fold, for example secondary structure prediction and alignment, profile comparison, sequence properties, homologous sequence search, kernel machines etc. Domains and folds might be taken from SCOP or CATH.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1564,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1277,,,,,A report on known protein structural domains or folds that are recognised (identified) in protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1565,Protein-protein interaction report,,"protein-protein interaction(s), including interactions between protein domains.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1565,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"protein-protein interaction(s), including interactions between protein domains.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0906,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1566,Protein-ligand interaction report,Protein-drug interaction report,An informative report on protein-ligand (small molecule) interaction(s).,FALSE,,,http://edamontology.org/data_0906,,beta12orEarlier,,,,,,,,,,,,data_1566,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on protein-ligand (small molecule) interaction(s).,,Protein-drug interaction report,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1567,Protein-nucleic acid interactions report,,protein-DNA/RNA interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1567,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,protein-DNA/RNA interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0906,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1583,Nucleic acid melting profile,Nucleic acid stability profile,"Data on the dissociation characteristics of a double-stranded nucleic acid molecule (DNA or a DNA/RNA hybrid) during heating.|A melting (stability) profile calculated the free energy required to unwind and separate the nucleic acid strands, plotted for sliding windows over a sequence.",FALSE,,,http://edamontology.org/data_2985,,beta12orEarlier,,,,,,,,,,,,data_1583,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on the dissociation characteristics of a double-stranded nucleic acid molecule (DNA or a DNA/RNA hybrid) during heating.,Nucleic acid stability profile,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1584,Nucleic acid enthalpy,,Enthalpy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,FALSE,,,http://edamontology.org/data_2985,,beta12orEarlier,,,,,,,,,,,,data_1584,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Enthalpy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1585,Nucleic acid entropy,,Entropy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,FALSE,,,http://edamontology.org/data_2985,,beta12orEarlier,,,,,,,,,,,,data_1585,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entropy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1586,Nucleic acid melting temperature,,Melting temperature of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1586,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2139,,,,,Melting temperature of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1587,Nucleic acid stitch profile,,"Stitch profile of hybridised or double stranded nucleic acid (DNA or RNA/DNA).|A stitch profile diagram shows partly melted DNA conformations (with probabilities) at a range of temperatures. For example, a stitch profile might show possible loop openings with their location, size, probability and fluctuations at a given temperature.",FALSE,,,http://edamontology.org/data_1583,,beta12orEarlier,,,,,,,,,,,,data_1587,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Stitch profile of hybridised or double stranded nucleic acid (DNA or RNA/DNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1588,DNA base pair stacking energies data,,DNA base pair stacking energies data.,FALSE,,,http://edamontology.org/data_2088,,beta12orEarlier,,,,,,,,,,,,data_1588,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA base pair stacking energies data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1589,DNA base pair twist angle data,,DNA base pair twist angle data.,FALSE,,,http://edamontology.org/data_2088,,beta12orEarlier,,,,,,,,,,,,data_1589,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA base pair twist angle data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1590,DNA base trimer roll angles data,,DNA base trimer roll angles data.,FALSE,,,http://edamontology.org/data_2088,,beta12orEarlier,,,,,,,,,,,,data_1590,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA base trimer roll angles data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1591,Vienna RNA parameters,,RNA parameters used by the Vienna package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1591,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA parameters used by the Vienna package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1592,Vienna RNA structure constraints,,Structure constraints used by the Vienna package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1592,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Structure constraints used by the Vienna package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1593,Vienna RNA concentration data,,RNA concentration data used by the Vienna package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1593,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA concentration data used by the Vienna package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1594,Vienna RNA calculated energy,,RNA calculated energy data generated by the Vienna package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1594,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1584,,,,,RNA calculated energy data generated by the Vienna package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1595,Base pairing probability matrix dotplot,,Dotplot of RNA base pairing probability matrix.|Such as generated by the Vienna package.,FALSE,,,http://edamontology.org/data_2088|http://edamontology.org/data_2884,,beta12orEarlier,,,,,,,,,,,,data_1595,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Dotplot of RNA base pairing probability matrix.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1596,Nucleic acid folding report,Nucleic acid report (folding model)|Nucleic acid report (folding)|RNA secondary structure folding probablities|RNA secondary structure folding classification,"A report on an analysis of RNA/DNA folding, minimum folding energies for DNA or RNA sequences, energy landscape of RNA mutants etc.",FALSE,,,http://edamontology.org/data_2084,,beta12orEarlier,,,,,,,,,,,,data_1596,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on an analysis of RNA/DNA folding, minimum folding energies for DNA or RNA sequences, energy landscape of RNA mutants etc.",Nucleic acid report (folding model)|Nucleic acid report (folding),RNA secondary structure folding probablities|RNA secondary structure folding classification,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1597,Codon usage table,,"Table of codon usage data calculated from one or more nucleic acid sequences.|A codon usage table might include the codon usage table name, optional comments and a table with columns for codons and corresponding codon usage data. A genetic code can be extracted from or represented by a codon usage table.",FALSE,,,http://edamontology.org/data_0914,,beta12orEarlier,,,,,,,,,,,,data_1597,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Table of codon usage data calculated from one or more nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1598,Genetic code,,A genetic code for an organism.|A genetic code need not include detailed codon usage information.,FALSE,,,http://edamontology.org/data_0914,,beta12orEarlier,,,,,,,,,,,,data_1598,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A genetic code for an organism.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1599,Codon adaptation index,,A simple measure of synonymous codon usage bias often used to predict gene expression levels.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1599,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2865,,,,,A simple measure of synonymous codon usage bias often used to predict gene expression levels.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1600,Codon usage bias plot,Synonymous codon usage statistic plot,A plot of the synonymous codon usage calculated for windows over a nucleotide sequence.,FALSE,,,http://edamontology.org/data_0914,,beta12orEarlier,,,,,,,,,,,,data_1600,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of the synonymous codon usage calculated for windows over a nucleotide sequence.,Synonymous codon usage statistic plot,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1601,Nc statistic,,The effective number of codons used in a gene sequence.  This reflects how far codon usage of a gene departs from equal usage of synonymous codons.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1601,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2865,,,,,The effective number of codons used in a gene sequence.  This reflects how far codon usage of a gene departs from equal usage of synonymous codons.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1602,Codon usage fraction difference,,The differences in codon usage fractions between two codon usage tables.,FALSE,,,http://edamontology.org/data_0914,,beta12orEarlier,,,,,,,,,,,,data_1602,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The differences in codon usage fractions between two codon usage tables.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1621,Pharmacogenomic test report,,Data on the influence of genotype on drug response.|The report might correlate gene expression or single-nucleotide polymorphisms with drug efficacy or toxicity.,FALSE,,,http://edamontology.org/data_0920,,beta12orEarlier,,,,,,,,,,,,data_1621,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on the influence of genotype on drug response.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1622,Disease report,,"An informative report on a specific disease.|For example, an informative report on a specific tumor including nature and origin of the sample, anatomic site, organ or tissue, tumor type, including morphology and/or histologic type, and so on.",FALSE,,,http://edamontology.org/data_0920,,beta12orEarlier,,,,,,,,,,,,data_1622,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a specific disease.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1634,Linkage disequilibrium (report),,A report on linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1634,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0927,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1636,Heat map,,"A graphical 2D tabular representation of gene expression data, typically derived from a DNA microarray experiment.|A heat map is a table where rows and columns correspond to different genes and contexts (for example, cells or samples) and the cell color represents the level of expression of a gene that context.",FALSE,,,http://edamontology.org/data_2968|http://edamontology.org/data_3768,,beta12orEarlier,,,,,,,,,,,,data_1636,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A graphical 2D tabular representation of gene expression data, typically derived from a DNA microarray experiment.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1642,Affymetrix probe sets library file,,Affymetrix library file of information about which probes belong to which probe set.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1642,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2717,,,,,Affymetrix library file of information about which probes belong to which probe set.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1643,Affymetrix probe sets information library file,GIN file,Affymetrix library file of information about the probe sets such as the gene name with which the probe set is associated.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1643,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2717,,,,,Affymetrix library file of information about the probe sets such as the gene name with which the probe set is associated.,,,GIN file,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1646,Molecular weights standard fingerprint,,"Standard protonated molecular masses from trypsin (modified porcine trypsin, Promega) and keratin peptides, used in EMBOSS.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1646,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Standard protonated molecular masses from trypsin (modified porcine trypsin, Promega) and keratin peptides, used in EMBOSS.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0944,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_1656,Metabolic pathway report,,"A report typically including a map (diagram) of a metabolic pathway.|This includes carbohydrate, energy, lipid, nucleotide, amino acid, glycan, PK/NRP, cofactor/vitamin, secondary metabolite, xenobiotics etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1656,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report typically including a map (diagram) of a metabolic pathway.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1657,Genetic information processing pathway report,,genetic information processing pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1657,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,genetic information processing pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1658,Environmental information processing pathway report,,environmental information processing pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1658,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,environmental information processing pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1659,Signal transduction pathway report,,A report typically including a map (diagram) of a signal transduction pathway.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1659,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report typically including a map (diagram) of a signal transduction pathway.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1660,Cellular process pathways report,,Topic concernning cellular process pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1660,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Topic concernning cellular process pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1661,Disease pathway or network report,,"disease pathways, typically of human disease.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1661,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"disease pathways, typically of human disease.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0906,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1662,Drug structure relationship map,,A report typically including a map (diagram) of drug structure relationships.,FALSE,,,http://edamontology.org/data_1696,,beta12orEarlier,,,,,,,,,,,,data_1662,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report typically including a map (diagram) of drug structure relationships.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1663,Protein interaction networks,,networks of protein interactions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1663,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2600,,,,,networks of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_1664,MIRIAM datatype,,"An entry (data type) from the Minimal Information Requested in the Annotation of Biochemical Models (MIRIAM) database of data resources.|A MIRIAM entry describes a MIRIAM data type including the official name, synonyms, root URI, identifier pattern (regular expression applied to a unique identifier of the data type) and documentation. Each data type can be associated with several resources. Each resource is a physical location of a service (typically a database) providing information on the elements of a data type. Several resources may exist for each data type, provided the same (mirrors) or different information. MIRIAM provides a stable and persistent reference to its data types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1664,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1883,,,,,An entry (data type) from the Minimal Information Requested in the Annotation of Biochemical Models (MIRIAM) database of data resources.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1667,E-value,Expectation value,A simple floating point number defining the lower or upper limit of an expectation value (E-value).|An expectation value (E-Value) is the expected number of observations which are at least as extreme as observations expected to occur by random chance. The E-value describes the number of hits with a given score or better that are expected to occur at random when searching a database of a particular size. It decreases exponentially with the score (S) of a hit. A low E value indicates a more significant score.,FALSE,,,http://edamontology.org/data_0951,,beta12orEarlier,,,,,,,,,,,,data_1667,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A simple floating point number defining the lower or upper limit of an expectation value (E-value).,Expectation value,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1668,Z-value,,The z-value is the number of standard deviations a data value is above or below a mean value.|A z-value might be specified as a threshold for reporting hits from database searches.,FALSE,,,http://edamontology.org/data_0951,,beta12orEarlier,,,,,,,,,,,,data_1668,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The z-value is the number of standard deviations a data value is above or below a mean value.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1669,P-value,,"The P-value is the probability of obtaining by random chance a result that is at least as extreme as an observed result, assuming a NULL hypothesis is true.|A z-value might be specified as a threshold for reporting hits from database searches.",FALSE,,,http://edamontology.org/data_0951,,beta12orEarlier,,,,,,,,,,,,data_1669,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The P-value is the probability of obtaining by random chance a result that is at least as extreme as an observed result, assuming a NULL hypothesis is true.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1670,Database version information,,"Information on a database (or ontology) version, for example name, version number and release date.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1670,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,"Information on a database (or ontology) version, for example name, version number and release date.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1671,Tool version information,,"Information on an application version, for example name, version number and release date.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1671,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0958,,,,,"Information on an application version, for example name, version number and release date.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1672,CATH version information,,Information on a version of the CATH database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1672,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,Information on a version of the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1673,Swiss-Prot to PDB mapping,,Cross-mapping of Swiss-Prot codes to PDB identifiers.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1673,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0954,,,,,Cross-mapping of Swiss-Prot codes to PDB identifiers.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1674,Sequence database cross-references,,Cross-references from a sequence record to other databases.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1674,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2093,,,,,Cross-references from a sequence record to other databases.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1675,Job status,,"Metadata on the status of a submitted job.|Values for EBI services are 'DONE' (job has finished and the results can then be retrieved), 'ERROR' (the job failed or no results where found), 'NOT_FOUND' (the job id is no longer available; job results might be deleted, 'PENDING' (the job is in a queue waiting processing), 'RUNNING' (the job is currently being processed).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1675,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,Metadata on the status of a submitted job.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1676,Job ID,,The (typically numeric) unique identifier of a submitted job.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1676,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,The (typically numeric) unique identifier of a submitted job.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,,,
http://edamontology.org/data_1677,Job type,,"A label (text token) describing the type of job, for example interactive or non-interactive.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1677,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"A label (text token) describing the type of job, for example interactive or non-interactive.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1678,Tool log,,"A report of tool-specific metadata on some analysis or process performed, for example a log of diagnostic or error messages.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1678,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,"A report of tool-specific metadata on some analysis or process performed, for example a log of diagnostic or error messages.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1679,DaliLite log file,,DaliLite log file describing all the steps taken by a DaliLite alignment of two protein structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1679,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,DaliLite log file describing all the steps taken by a DaliLite alignment of two protein structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1680,STRIDE log file,,STRIDE log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1680,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,STRIDE log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1681,NACCESS log file,,NACCESS log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1681,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,NACCESS log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1682,EMBOSS wordfinder log file,,EMBOSS wordfinder log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1682,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS wordfinder log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1683,EMBOSS domainatrix log file,,EMBOSS (EMBASSY) domainatrix application log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1683,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS (EMBASSY) domainatrix application log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1684,EMBOSS sites log file,,EMBOSS (EMBASSY) sites application log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1684,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS (EMBASSY) sites application log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1685,EMBOSS supermatcher error file,,EMBOSS (EMBASSY) supermatcher error file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1685,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS (EMBASSY) supermatcher error file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1686,EMBOSS megamerger log file,,EMBOSS megamerger log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1686,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS megamerger log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1687,EMBOSS whichdb log file,,EMBOSS megamerger log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1687,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS megamerger log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1688,EMBOSS vectorstrip log file,,EMBOSS vectorstrip log file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1688,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,EMBOSS vectorstrip log file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1689,Username,,A username on a computer system.,FALSE,,,http://edamontology.org/data_2101,,beta12orEarlier,,,,,,,,,,,,data_1689,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A username on a computer system.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1690,Password,,A password on a computer system.,FALSE,,,http://edamontology.org/data_2101,,beta12orEarlier,,,,,,,,,,,,data_1690,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A password on a computer system.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1691,Email address,,A valid email address of an end-user.,FALSE,,,http://edamontology.org/data_2101,,beta12orEarlier,,,,,,,,,,,,data_1691,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Email|Moby:EmailAddress,A valid email address of an end-user.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1692,Person name,,The name of a person.,FALSE,,,http://edamontology.org/data_2118,,beta12orEarlier,,,,,,,,,,,,data_1692,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a person.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1693,Number of iterations,,Number of iterations of an algorithm.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1693,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Number of iterations of an algorithm.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1694,Number of output entities,,"Number of entities (for example database hits, sequences, alignments etc) to write to an output file.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1694,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Number of entities (for example database hits, sequences, alignments etc) to write to an output file.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1695,Hit sort order,,Controls the order of hits (reported matches) in an output file from a database search.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1695,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Controls the order of hits (reported matches) in an output file from a database search.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1696,Drug report,Drug annotation,An informative report on a specific drug.,FALSE,,,http://edamontology.org/data_0962,,beta12orEarlier,,,,,,,,,,,,data_1696,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report on a specific drug.,Drug annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1707,Phylogenetic tree image,,"An image (for viewing or printing) of a phylogenetic tree including (typically) a plot of rooted or unrooted phylogenies, cladograms, circular trees or phenograms and associated information.|See also 'Phylogenetic tree'",FALSE,,,http://edamontology.org/data_2968,,beta12orEarlier,,,,,,,,,,,,data_1707,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An image (for viewing or printing) of a phylogenetic tree including (typically) a plot of rooted or unrooted phylogenies, cladograms, circular trees or phenograms and associated information.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1708,RNA secondary structure image,,"Image of RNA secondary structure, knots, pseudoknots etc.",FALSE,,,http://edamontology.org/data_2968,,beta12orEarlier,,,,,,,,,,,,data_1708,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Image of RNA secondary structure, knots, pseudoknots etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1709,Protein secondary structure image,,Image of protein secondary structure.,FALSE,,,http://edamontology.org/data_3153,,beta12orEarlier,,,,,,,,,,,,data_1709,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image of protein secondary structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1710,Structure image,,Image of one or more molecular tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_2968,,beta12orEarlier,,,,,,,,,,,,data_1710,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image of one or more molecular tertiary (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1711,Sequence alignment image,,Image of two or more aligned molecular sequences possibly annotated with alignment features.,FALSE,,,http://edamontology.org/data_2968,,beta12orEarlier,,,,,,,,,,,,data_1711,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image of two or more aligned molecular sequences possibly annotated with alignment features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1712,Chemical structure image,Small molecule structure image,An image of the structure of a small chemical compound.|The molecular identifier and formula are typically included.,FALSE,,,http://edamontology.org/data_1710,,beta12orEarlier,,,,,,,,,,,,data_1712,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image of the structure of a small chemical compound.,Small molecule structure image,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1713,Fate map,," A fate map is a plan of early stage of an embryo such as a blastula, showing areas that are significance to development.",FALSE,,,http://edamontology.org/data_2968|http://edamontology.org/data_2530,,beta12orEarlier,,,,,,,,,,,,data_1713,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,," A fate map is a plan of early stage of an embryo such as a blastula, showing areas that are significance to development.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1714,Microarray spots image,,An image of spots from a microarray experiment.,FALSE,,,http://edamontology.org/data_2603|http://edamontology.org/data_3424,,beta12orEarlier,,,,,,,,,,,,data_1714,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image of spots from a microarray experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1715,BioPax term,,A term from the BioPax ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1715,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the BioPax ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1716,GO,,A term definition from The Gene Ontology (GO).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1716,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term definition from The Gene Ontology (GO).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1717,MeSH,,A term from the MeSH vocabulary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1717,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the MeSH vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1718,HGNC,,A term from the HGNC controlled vocabulary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1718,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the HGNC controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1719,NCBI taxonomy vocabulary,,A term from the NCBI taxonomy vocabulary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1719,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the NCBI taxonomy vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1720,Plant ontology term,,A term from the Plant Ontology (PO).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1720,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the Plant Ontology (PO).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1721,UMLS,,A term from the UMLS vocabulary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1721,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the UMLS vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1722,FMA,,"A term from Foundational Model of Anatomy.|Classifies anatomical entities according to their shared characteristics (genus) and distinguishing characteristics (differentia). Specifies the part-whole and spatial relationships of the entities, morphological transformation of the entities during prenatal development and the postnatal life cycle and principles, rules and definitions according to which classes and relationships in the other three components of FMA are represented.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1722,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from Foundational Model of Anatomy.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1723,EMAP,,A term from the EMAP mouse ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1723,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the EMAP mouse ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1724,ChEBI,,A term from the ChEBI ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1724,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the ChEBI ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1725,MGED,,A term from the MGED ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1725,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the MGED ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1726,myGrid,,"A term from the myGrid ontology.|The ontology is provided as two components, the service ontology and the domain ontology. The domain ontology acts provides concepts for core bioinformatics data types and their relations. The service ontology describes the physical and operational features of web services.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1726,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0966,,,,,A term from the myGrid ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1727,GO (biological process),,A term definition for a biological process from the Gene Ontology (GO).|Data Type is an enumerated string.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1727,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2858,,,,,A term definition for a biological process from the Gene Ontology (GO).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1728,GO (molecular function),,A term definition for a molecular function from the Gene Ontology (GO).|Data Type is an enumerated string.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1728,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2858,,,,,A term definition for a molecular function from the Gene Ontology (GO).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1729,GO (cellular component),,A term definition for a cellular component from the Gene Ontology (GO).|Data Type is an enumerated string.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1729,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2858,,,,,A term definition for a cellular component from the Gene Ontology (GO).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1730,Ontology relation type,,A relation type defined in an ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1730,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0967,,,,,A relation type defined in an ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1731,Ontology concept definition,Ontology class definition,The definition of a concept from an ontology.,FALSE,,,http://edamontology.org/data_0967,,beta12orEarlier,,,,,,,,,,,,data_1731,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The definition of a concept from an ontology.,Ontology class definition,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1732,Ontology concept comment,,A comment on a concept from an ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1732,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0967,,,,,A comment on a concept from an ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_1733,Ontology concept reference,,Reference for a concept from an ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1733,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2093,,,,,Reference for a concept from an ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1738,doc2loc document information,,"Information on a published article provided by the doc2loc program.|The doc2loc output includes the url, format, type and availability code of a document for every service provider.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1738,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0970,,,,,Information on a published article provided by the doc2loc program.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1742,PDB residue number,,A residue identifier (a string) from a PDB file.,FALSE,,,http://edamontology.org/data_1016,,beta12orEarlier,,,,,,,,,,,,data_1742,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDBML:PDB_residue_no|WHATIF: pdb_number,A residue identifier (a string) from a PDB file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1743,Atomic coordinate,Cartesian coordinate,Cartesian coordinate of an atom (in a molecular structure).,FALSE,,,http://edamontology.org/data_1917,,beta12orEarlier,,,,,,,,,,,,data_1743,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cartesian coordinate of an atom (in a molecular structure).,Cartesian coordinate,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1744,Atomic x coordinate,Cartesian x coordinate,Cartesian x coordinate of an atom (in a molecular structure).,FALSE,,,http://edamontology.org/data_1743,,beta12orEarlier,,,,,,,,,,,,data_1744,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_Cartn_x|PDBML:_atom_site.Cartn_x in PDBML,Cartesian x coordinate of an atom (in a molecular structure).,Cartesian x coordinate,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1745,Atomic y coordinate,Cartesian y coordinate,Cartesian y coordinate of an atom (in a molecular structure).,FALSE,,,http://edamontology.org/data_1743,,beta12orEarlier,,,,,,,,,,,,data_1745,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDBML:_atom_site.Cartn_y in PDBML|WHATIF: PDBx_Cartn_y,Cartesian y coordinate of an atom (in a molecular structure).,Cartesian y coordinate,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1746,Atomic z coordinate,Cartesian z coordinate,Cartesian z coordinate of an atom (in a molecular structure).,FALSE,,,http://edamontology.org/data_1743,,beta12orEarlier,,,,,,,,,,,,data_1746,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_Cartn_z|PDBML:_atom_site.Cartn_z,Cartesian z coordinate of an atom (in a molecular structure).,Cartesian z coordinate,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1748,PDB atom name,,Identifier (a string) of a specific atom from a PDB file for a molecular structure.,FALSE,,,http://edamontology.org/data_1757,,beta12orEarlier,,,,,,,,,,,,data_1748,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_type_symbol|WHATIF: PDBx_auth_atom_id|WHATIF: alternate_atom|PDBML:pdbx_PDB_atom_name|WHATIF: atom_type,Identifier (a string) of a specific atom from a PDB file for a molecular structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1755,Protein atom,Atom data|CHEBI:33250,"Data on a single atom from a protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1755,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on a single atom from a protein structure.,Atom data,,CHEBI:33250,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1756,Protein residue,Residue,"Data on a single amino acid residue position in a protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_1756,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on a single amino acid residue position in a protein structure.,Residue,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1757,Atom name,,Name of an atom.,FALSE,,,http://edamontology.org/data_0983|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1757,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of an atom.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1758,PDB residue name,,Three-letter amino acid residue names as used in PDB files.,FALSE,,,http://edamontology.org/data_2564,,beta12orEarlier,,,,,,,,,,,,data_1758,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: type,Three-letter amino acid residue names as used in PDB files.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1759,PDB model number,Model number,Identifier of a model structure from a PDB file.,FALSE,,,http://edamontology.org/data_3035,,beta12orEarlier,,,,,,,,,,,,data_1759,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: model_number|PDBML:pdbx_PDB_model_num,Identifier of a model structure from a PDB file.,Model number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1762,CATH domain report,,"Summary of domain classification information for a CATH domain.|The report (for example http://www.cathdb.info/domain/1cukA01) includes CATH codes for levels in the hierarchy for the domain, level descriptions and relevant data and links.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1762,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0907,,,,,Summary of domain classification information for a CATH domain.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1764,CATH representative domain sequences (ATOM),,FASTA sequence database (based on ATOM records in PDB) for CATH domains (clustered at different levels of sequence identity).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1764,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1235,,,,,FASTA sequence database (based on ATOM records in PDB) for CATH domains (clustered at different levels of sequence identity).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1765,CATH representative domain sequences (COMBS),,FASTA sequence database (based on COMBS sequence data) for CATH domains (clustered at different levels of sequence identity).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1765,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1235,,,,,FASTA sequence database (based on COMBS sequence data) for CATH domains (clustered at different levels of sequence identity).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1766,CATH domain sequences (ATOM),,FASTA sequence database for all CATH domains (based on PDB ATOM records).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1766,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,FASTA sequence database for all CATH domains (based on PDB ATOM records).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1767,CATH domain sequences (COMBS),,FASTA sequence database for all CATH domains (based on COMBS sequence data).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1767,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,FASTA sequence database for all CATH domains (based on COMBS sequence data).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1771,Sequence version,Sequence version information,Information on an molecular sequence version.,FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_1771,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Information on an molecular sequence version.,Sequence version information,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1772,Score,,"A numerical value, that is some type of scored value arising for example from a prediction method.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_1772,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A numerical value, that is some type of scored value arising for example from a prediction method.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1776,Protein report (function),,"Report on general functional properties of specific protein(s).|For properties that can be mapped to a sequence, use 'Sequence report' instead.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1776,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,Report on general functional properties of specific protein(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1783,Gene name (ASPGD),,Name of a gene from Aspergillus Genome Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1783,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:ASPGD_LOCUS,Name of a gene from Aspergillus Genome Database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1784,Gene name (CGD),,Name of a gene from Candida Genome Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1784,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:CGD_LOCUS,Name of a gene from Candida Genome Database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1785,Gene name (dictyBase),,Name of a gene from dictyBase database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1785,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:dictyBase,Name of a gene from dictyBase database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1786,Gene name (EcoGene primary),EcoGene primary gene name,Primary name of a gene from EcoGene Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1786,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:ECOGENE_G,Primary name of a gene from EcoGene Database.,EcoGene primary gene name,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1787,Gene name (MaizeGDB),,Name of a gene from MaizeGDB (maize genes) database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1787,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:MaizeGDB_Locus,Name of a gene from MaizeGDB (maize genes) database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1788,Gene name (SGD),,Name of a gene from Saccharomyces Genome Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1788,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:SGD_LOCUS,Name of a gene from Saccharomyces Genome Database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1789,Gene name (TGD),,Name of a gene from Tetrahymena Genome Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1789,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs:TGD_LOCUS,Name of a gene from Tetrahymena Genome Database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1790,Gene name (CGSC),,Symbol of a gene from E.coli Genetic Stock Center.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1790,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs: CGSC,Symbol of a gene from E.coli Genetic Stock Center.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1791,Gene name (HGNC),,Symbol of a gene approved by the HUGO Gene Nomenclature Committee.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1791,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs: HGNC_gene,Symbol of a gene approved by the HUGO Gene Nomenclature Committee.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,"HGNC:[0-9]{1,5}",,
http://edamontology.org/data_1792,Gene name (MGD),,Symbol of a gene from the Mouse Genome Database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1792,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs: MGD,Symbol of a gene from the Mouse Genome Database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,MGI:[0-9]+,,
http://edamontology.org/data_1793,Gene name (Bacillus subtilis),,Symbol of a gene from Bacillus subtilis Genome Sequence Project.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1793,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,http://www.geneontology.org/doc/GO.xrf_abbs: SUBTILISTG,Symbol of a gene from Bacillus subtilis Genome Sequence Project.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1794,Gene ID (PlasmoDB),,Identifier of a gene from PlasmoDB Plasmodium Genome Resource.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1794,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: ApiDB_PlasmoDB,Identifier of a gene from PlasmoDB Plasmodium Genome Resource.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1795,Gene ID (EcoGene),EcoGene ID|EcoGene Accession,Identifier of a gene from EcoGene Database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1795,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a gene from EcoGene Database.,EcoGene ID|EcoGene Accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1796,Gene ID (FlyBase),,Gene identifier from FlyBase database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1796,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: FlyBase|http://www.geneontology.org/doc/GO.xrf_abbs: FB,Gene identifier from FlyBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1797,Gene ID (GeneDB Glossina morsitans),,Gene identifier from Glossina morsitans GeneDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1797,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1035,,,,,Gene identifier from Glossina morsitans GeneDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1798,Gene ID (GeneDB Leishmania major),,Gene identifier from Leishmania major GeneDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1798,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1035,,,,,Gene identifier from Leishmania major GeneDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1799,Gene ID (GeneDB Plasmodium falciparum),,Gene identifier from Plasmodium falciparum GeneDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1799,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1035,,,,http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Pfalciparum,Gene identifier from Plasmodium falciparum GeneDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1800,Gene ID (GeneDB Schizosaccharomyces pombe),,Gene identifier from Schizosaccharomyces pombe GeneDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1800,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1035,,,,http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Spombe,Gene identifier from Schizosaccharomyces pombe GeneDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1801,Gene ID (GeneDB Trypanosoma brucei),,Gene identifier from Trypanosoma brucei GeneDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1801,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1035,,,,http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Tbrucei,Gene identifier from Trypanosoma brucei GeneDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1802,Gene ID (Gramene),,Gene identifier from Gramene database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1802,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: GR_gene|http://www.geneontology.org/doc/GO.xrf_abbs: GR_GENE,Gene identifier from Gramene database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1803,Gene ID (Virginia microbial),,Gene identifier from Virginia Bioinformatics Institute microbial database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1803,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: VMD|http://www.geneontology.org/doc/GO.xrf_abbs: PAMGO_VMD,Gene identifier from Virginia Bioinformatics Institute microbial database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1804,Gene ID (SGN),,Gene identifier from Sol Genomics Network.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1804,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: SGN,Gene identifier from Sol Genomics Network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1805,Gene ID (WormBase),,Gene identifier used by WormBase database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2113,,beta12orEarlier,,,,,,,,,,,,data_1805,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: WormBase|http://www.geneontology.org/doc/GO.xrf_abbs: WB,Gene identifier used by WormBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,WBGene[0-9]{8},,
http://edamontology.org/data_1806,Gene synonym,,Any name (other than the recommended one) for a gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1806,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Any name (other than the recommended one) for a gene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1807,ORF name,,The name of an open reading frame attributed by a sequencing project.,FALSE,,,http://edamontology.org/data_2795|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1807,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of an open reading frame attributed by a sequencing project.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1852,Sequence assembly component,,A component of a larger sequence assembly.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1852,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0925,,,,,A component of a larger sequence assembly.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1853,Chromosome annotation (aberration),,A report on a chromosome aberration such as abnormalities in chromosome structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1853,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0919,,,,,A report on a chromosome aberration such as abnormalities in chromosome structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1855,Clone ID,,An identifier of a clone (cloned molecular sequence) from a database.,FALSE,,,http://edamontology.org/data_2769,,beta12orEarlier,,,,,,,,,,,,data_1855,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a clone (cloned molecular sequence) from a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1856,PDB insertion code,,An insertion code (part of the residue number) for an amino acid residue from a PDB file.,FALSE,,,http://edamontology.org/data_1016,,beta12orEarlier,,,,,,,,,,,,data_1856,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: insertion_code|PDBML:pdbx_PDB_ins_code,An insertion code (part of the residue number) for an amino acid residue from a PDB file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1857,Atomic occupancy,,The fraction of an atom type present at a site in a molecular structure.|The sum of the occupancies of all the atom types at a site should not normally significantly exceed 1.0.,FALSE,,,http://edamontology.org/data_1917,,beta12orEarlier,,,,,,,,,,,,data_1857,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_occupancy,The fraction of an atom type present at a site in a molecular structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1858,Isotropic B factor,,Isotropic B factor (atomic displacement parameter) for an atom from a PDB file.,FALSE,,,http://edamontology.org/data_1917,,beta12orEarlier,,,,,,,,,,,,data_1858,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBx_B_iso_or_equiv,Isotropic B factor (atomic displacement parameter) for an atom from a PDB file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1859,Deletion map,Deletion-based cytogenetic map,A cytogenetic map showing chromosome banding patterns in mutant cell lines relative to the wild type.|A cytogenetic map is built from a set of mutant cell lines with sub-chromosomal deletions and a reference wild-type line ('genome deletion panel'). The panel is used to map markers onto the genome by comparing mutant to wild-type banding patterns. Markers are linked (occur in the same deleted region) if they share the same banding pattern (presence or absence) as the deletion panel.,FALSE,,,http://edamontology.org/data_1283,,beta12orEarlier,,,,,,,,,,,,data_1859,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A cytogenetic map showing chromosome banding patterns in mutant cell lines relative to the wild type.,Deletion-based cytogenetic map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1860,QTL map,Quantitative trait locus map,A genetic map which shows the approximate location of quantitative trait loci (QTL) between two or more markers.,FALSE,,,http://edamontology.org/data_1278,,beta12orEarlier,,,,,,,,,,,,data_1860,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A genetic map which shows the approximate location of quantitative trait loci (QTL) between two or more markers.,Quantitative trait locus map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1863,Haplotype map,,"A map of haplotypes in a genome or other sequence, describing common patterns of genetic variation.",FALSE,,,http://edamontology.org/data_1278,,beta12orEarlier,,,,,,,,,,,,data_1863,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Haplotyping_Study_obj,"A map of haplotypes in a genome or other sequence, describing common patterns of genetic variation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1864,Map set data,,"Data describing a set of multiple genetic or physical maps, typically sharing a common set of features which are mapped.",FALSE,,,http://edamontology.org/data_2019,,beta12orEarlier,,,,,,,,,,,,data_1864,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GCP_CorrelatedMapSet|Moby:GCP_CorrelatedLinkageMapSet,"Data describing a set of multiple genetic or physical maps, typically sharing a common set of features which are mapped.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1865,Map feature,,A feature which may mapped (positioned) on a genetic or other type of map.|Mappable features may be based on Gramene's notion of map features; see http://www.gramene.org/db/cmap/feature_type_info.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1865,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1255|http://edamontology.org/data_2019|http://edamontology.org/data_1276,,,,,A feature which may mapped (positioned) on a genetic or other type of map.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1866,Map type,,"A designation of the type of map (genetic map, physical map, sequence map etc) or map set.|Map types may be based on Gramene's notion of a map type; see http://www.gramene.org/db/cmap/map_type_info.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1866,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"A designation of the type of map (genetic map, physical map, sequence map etc) or map set.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_1867,Protein fold name,,The name of a protein fold.,FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_1867,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a protein fold.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1868,Taxon,Taxonomy rank|Taxonomic rank,The name of a group of organisms belonging to the same taxonomic rank.|For a complete list of taxonomic ranks see https://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary.,FALSE,,,http://edamontology.org/data_2909,,beta12orEarlier,,,,,,,,,,,,data_1868,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:PotentialTaxon|Moby:BriefTaxonConcept,The name of a group of organisms belonging to the same taxonomic rank.,Taxonomy rank|Taxonomic rank,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1869,Organism identifier,,A unique identifier of a (group of) organisms.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_1869,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a (group of) organisms.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1870,Genus name,,The name of a genus of organism.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_1870,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a genus of organism.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1872,Taxonomic classification,Taxonomic information|Taxonomic name,"The full name for a group of organisms, reflecting their biological classification and (usually) conforming to a standard nomenclature.|Name components correspond to levels in a taxonomic hierarchy (e.g. 'Genus', 'Species', etc.) Meta information such as a reference where the name was defined and a date might be included.",FALSE,,,http://edamontology.org/data_2909,,beta12orEarlier,,,,,,,,,,,,data_1872,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:TaxonScientificName|Moby:GCP_Taxon|Moby:TaxonName|Moby:iANT_organism-xml|Moby:TaxonTCS,"The full name for a group of organisms, reflecting their biological classification and (usually) conforming to a standard nomenclature.",Taxonomic information|Taxonomic name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1873,iHOP organism ID,,A unique identifier for an organism used in the iHOP database.,FALSE,,,http://edamontology.org/data_2908,,beta12orEarlier,,,,,,,,,,,,data_1873,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:iHOPorganism,A unique identifier for an organism used in the iHOP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1874,Genbank common name,,Common name for an organism as used in the GenBank database.,FALSE,,,http://edamontology.org/data_2909,,beta12orEarlier,,,,,,,,,,,,data_1874,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Common name for an organism as used in the GenBank database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1875,NCBI taxon,,The name of a taxon from the NCBI taxonomy database.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_1875,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a taxon from the NCBI taxonomy database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1877,Synonym,,An alternative for a word.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1877,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0968,,,,,An alternative for a word.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1878,Misspelling,,A common misspelling of a word.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1878,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0968,,,,,A common misspelling of a word.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1879,Acronym,,An abbreviation of a phrase or word.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1879,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0968,,,,,An abbreviation of a phrase or word.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1880,Misnomer,,A term which is likely to be misleading of its meaning.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1880,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0968,,,,,A term which is likely to be misleading of its meaning.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1881,Author ID,,Information on the authors of a published work.,FALSE,,,http://edamontology.org/data_2118,,beta12orEarlier,,,,,,,,,,,,data_1881,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Author,Information on the authors of a published work.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1882,DragonDB author identifier,,An identifier representing an author in the DragonDB database.,FALSE,,,http://edamontology.org/data_1881,,beta12orEarlier,,,,,,,,,,,,data_1882,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier representing an author in the DragonDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1883,Annotated URI,,A URI along with annotation describing the data found at the address.,FALSE,,,http://edamontology.org/data_2093,,beta12orEarlier,,,,,,,,,,,,data_1883,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:DescribedLink,A URI along with annotation describing the data found at the address.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1884,UniProt keywords,,A controlled vocabulary for words and phrases that can appear in the keywords field (KW line) of entries from the UniProt database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1884,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0582,,,,,A controlled vocabulary for words and phrases that can appear in the keywords field (KW line) of entries from the UniProt database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1885,Gene ID (GeneFarm),,Identifier of a gene from the GeneFarm database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1885,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:GENEFARM_GeneID,Identifier of a gene from the GeneFarm database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1886,Blattner number,,The blattner identifier for a gene.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1886,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:Blattner_number,The blattner identifier for a gene.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1887,Gene ID (MIPS Maize),,Identifier for genetic elements in MIPS Maize database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1887,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2285,,,,Moby_namespace:MIPS_GE_Maize,Identifier for genetic elements in MIPS Maize database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1888,Gene ID (MIPS Medicago),,Identifier for genetic elements in MIPS Medicago database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1888,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2285,,,,Moby_namespace:MIPS_GE_Medicago,Identifier for genetic elements in MIPS Medicago database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_1889,Gene name (DragonDB),,The name of an Antirrhinum Gene from the DragonDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1889,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,Moby_namespace:DragonDB_Gene,The name of an Antirrhinum Gene from the DragonDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1890,Gene name (Arabidopsis),,"A unique identifier for an Arabidopsis gene, which is an acronym or abbreviation of the gene name.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1890,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,"A unique identifier for an Arabidopsis gene, which is an acronym or abbreviation of the gene name.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1891,iHOP symbol,,A unique identifier of a protein or gene used in the iHOP database.,FALSE,,,http://edamontology.org/data_2295|http://edamontology.org/data_2907|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_1891,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:iHOPsymbol,A unique identifier of a protein or gene used in the iHOP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1892,Gene name (GeneFarm),GeneFarm gene ID,Name of a gene from the GeneFarm database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1892,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Name of a gene from the GeneFarm database.,GeneFarm gene ID,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_1893,Locus ID,Locus name|Locus identifier,"A unique name or other identifier of a genetic locus, typically conforming to a scheme that names loci (such as predicted genes) depending on their position in a molecular sequence, for example a completely sequenced genome or chromosome.",FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_1893,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique name or other identifier of a genetic locus, typically conforming to a scheme that names loci (such as predicted genes) depending on their position in a molecular sequence, for example a completely sequenced genome or chromosome.",Locus name|Locus identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1895,Locus ID (AGI),AGI ID|AGI locus code|AGI identifier|Arabidopsis gene loci number,"Locus identifier for Arabidopsis Genome Initiative (TAIR, TIGR and MIPS databases)",FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1895,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs:AGI_LocusCode,"Locus identifier for Arabidopsis Genome Initiative (TAIR, TIGR and MIPS databases)",AGI ID|AGI locus code|AGI identifier|Arabidopsis gene loci number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,AT[1-5]G[0-9]{5},,
http://edamontology.org/data_1896,Locus ID (ASPGD),,Identifier for loci from ASPGD (Aspergillus Genome Database).,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1896,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: ASPGDID|http://www.geneontology.org/doc/GO.xrf_abbs: ASPGD,Identifier for loci from ASPGD (Aspergillus Genome Database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1897,Locus ID (MGG),,Identifier for loci from Magnaporthe grisea Database at the Broad Institute.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1897,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: Broad_MGG,Identifier for loci from Magnaporthe grisea Database at the Broad Institute.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1898,Locus ID (CGD),CGDID|CGD locus identifier,Identifier for loci from CGD (Candida Genome Database).,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1898,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: CGD|http://www.geneontology.org/doc/GO.xrf_abbs: CGDID,Identifier for loci from CGD (Candida Genome Database).,CGDID|CGD locus identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1899,Locus ID (CMR),,Locus identifier for Comprehensive Microbial Resource at the J. Craig Venter Institute.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1899,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: TIGR_CMR|http://www.geneontology.org/doc/GO.xrf_abbs: JCVI_CMR,Locus identifier for Comprehensive Microbial Resource at the J. Craig Venter Institute.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1900,NCBI locus tag,Locus ID (NCBI),Identifier for loci from NCBI database.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1900,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:LocusID|http://www.geneontology.org/doc/GO.xrf_abbs: NCBI_locus_tag,Identifier for loci from NCBI database.,Locus ID (NCBI),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1901,Locus ID (SGD),SGDID,Identifier for loci from SGD (Saccharomyces Genome Database).,FALSE,,,http://edamontology.org/data_2632|http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1901,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: SGD|http://www.geneontology.org/doc/GO.xrf_abbs: SGDID,Identifier for loci from SGD (Saccharomyces Genome Database).,SGDID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1902,Locus ID (MMP),,Identifier of loci from Maize Mapping Project.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1902,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:MMP_Locus,Identifier of loci from Maize Mapping Project.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1903,Locus ID (DictyBase),,Identifier of locus from DictyBase (Dictyostelium discoideum).,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1903,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:DDB_gene,Identifier of locus from DictyBase (Dictyostelium discoideum).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1904,Locus ID (EntrezGene),,Identifier of a locus from EntrezGene database.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1904,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:EntrezGene_ID|Moby_namespace:EntrezGene_EntrezGeneID,Identifier of a locus from EntrezGene database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1905,Locus ID (MaizeGDB),,Identifier of locus from MaizeGDB (Maize genome database).,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1905,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:MaizeGDB_Locus,Identifier of locus from MaizeGDB (Maize genome database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1906,Quantitative trait locus,,A stretch of DNA that is closely linked to the genes underlying a quantitative trait (a phenotype that varies in degree and depends upon the interactions between multiple genes and their environment).|A QTL sometimes but does not necessarily correspond to a gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_1906,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2012,,,,Moby:SO_QTL,A stretch of DNA that is closely linked to the genes underlying a quantitative trait (a phenotype that varies in degree and depends upon the interactions between multiple genes and their environment).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_1907,Gene ID (KOME),,Identifier of a gene from the KOME database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_1907,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby_namespace:GeneId,Identifier of a gene from the KOME database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1908,Locus ID (Tropgene),,Identifier of a locus from the Tropgene database.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_1908,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Tropgene_locus,Identifier of a locus from the Tropgene database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1916,Alignment,,"An alignment of molecular sequences, structures or profiles derived from them.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_1916,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An alignment of molecular sequences, structures or profiles derived from them.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_1917,Atomic property,General atomic property,Data for an atom (in a molecular structure).,FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_1917,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data for an atom (in a molecular structure).,General atomic property,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2007,UniProt keyword,,A word or phrase that can appear in the keywords field (KW line) of entries from the UniProt database.,FALSE,,,http://edamontology.org/data_0968,,beta12orEarlier,,,,,,,,,,,,data_2007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: SP_KW|Moby_namespace:SP_KW,A word or phrase that can appear in the keywords field (KW line) of entries from the UniProt database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2009,Ordered locus name,,"A name for a genetic locus conforming to a scheme that names loci (such as predicted genes) depending on their position in a molecular sequence, for example a completely sequenced genome or chromosome.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2009,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1893,,,,,"A name for a genetic locus conforming to a scheme that names loci (such as predicted genes) depending on their position in a molecular sequence, for example a completely sequenced genome or chromosome.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2012,Sequence coordinates,Sequence co-ordinates|Locus|Map position,"A position in a map (for example a genetic map), either a single position (point) or a region / interval.|This includes positions in genomes based on a reference sequence. A position may be specified for any mappable object, i.e. anything that may have positional information such as a physical position in a chromosome. Data might include sequence region name, strand, coordinate system name, assembly name, start position and end position.",FALSE,,,http://edamontology.org/data_1016|http://edamontology.org/data_2019|http://edamontology.org/data_1017,,beta12orEarlier,,,,,,,,,,,,data_2012,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GenePosition|Moby:HitPosition|PDBML:_atom_site.id|Moby:GCP_MapPosition|Moby:GCP_MapInterval|Moby:Position|Moby:Locus|Moby:GCP_MapPoint|Moby:MapPosition,"A position in a map (for example a genetic map), either a single position (point) or a region / interval.",Sequence co-ordinates|Locus|Map position,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2016,Amino acid property,Amino acid data,"Data concerning the intrinsic physical (e.g. structural) or chemical properties of one, more or all amino acids.",FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_2016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning the intrinsic physical (e.g. structural) or chemical properties of one, more or all amino acids.",Amino acid data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2018,Annotation,,"A human-readable collection of information which (typically) is generated or collated by hand and which describes a biological entity, phenomena or associated primary (e.g. sequence or structural) data, as distinct from the primary data itself and computer-generated reports derived from it.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2018,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,"A human-readable collection of information which (typically) is generated or collated by hand and which describes a biological entity, phenomena or associated primary (e.g. sequence or structural) data, as distinct from the primary data itself and computer-generated reports derived from it.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2019,Map data,Map attribute,"A molecular map (genetic or physical), an attribute of such a map, or data extracted from or derived from the analysis of such a map.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation. It includes concepts that are best described as scientific text or closely concerned with or derived from text.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A molecular map (genetic or physical), an attribute of such a map, or data extracted from or derived from the analysis of such a map.",Map attribute,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2022,Vienna RNA structural data,,Data used by the Vienna RNA analysis package.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2022,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data used by the Vienna RNA analysis package.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2023,Sequence mask parameter,,Data used to replace (mask) characters in a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2023,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data used to replace (mask) characters in a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2024,Enzyme kinetics data,,"Data concerning chemical reaction(s) catalysed by enzyme(s).|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0897|http://edamontology.org/data_2978,,beta12orEarlier,,,,,,,,,,,,data_2024,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning chemical reaction(s) catalysed by enzyme(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2025,Michaelis Menten plot,,"A plot giving an approximation of the kinetics of an enzyme-catalysed reaction, assuming simple kinetics (i.e. no intermediate or product inhibition, allostericity or cooperativity). It plots initial reaction rate to the substrate concentration (S) from which the maximum rate (vmax) is apparent.",FALSE,,,http://edamontology.org/data_2024,,beta12orEarlier,,,,,,,,,,,,data_2025,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A plot giving an approximation of the kinetics of an enzyme-catalysed reaction, assuming simple kinetics (i.e. no intermediate or product inhibition, allostericity or cooperativity). It plots initial reaction rate to the substrate concentration (S) from which the maximum rate (vmax) is apparent.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2026,Hanes Woolf plot,,A plot based on the Michaelis Menten equation of enzyme kinetics plotting the ratio of the initial substrate concentration (S) against the reaction velocity (v).,FALSE,,,http://edamontology.org/data_2024,,beta12orEarlier,,,,,,,,,,,,data_2026,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot based on the Michaelis Menten equation of enzyme kinetics plotting the ratio of the initial substrate concentration (S) against the reaction velocity (v).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2028,Experimental data,,"Raw data from or annotation on laboratory experiments.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2028,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2531|http://edamontology.org/data_3108,,,,,Raw data from or annotation on laboratory experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2041,Genome version information,,Information on a genome version.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2041,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2711,,,,,Information on a genome version.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2042,Evidence,,"Typically a statement about some data or results, including evidence or the source of a statement, which may include computational prediction, laboratory experiment, literature reference etc.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2042,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Typically a statement about some data or results, including evidence or the source of a statement, which may include computational prediction, laboratory experiment, literature reference etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2043,Sequence record lite,,"A molecular sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2043,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A molecular sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2044,Sequence,Sequences,"One or more molecular sequences, possibly with associated annotation.|This concept is a placeholder of concepts for primary sequence data including raw sequences and sequence records.  It should not normally be used for derivatives such as sequence alignments, motifs or profiles.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2044,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"One or more molecular sequences, possibly with associated annotation.",Sequences,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2046,Nucleic acid sequence record (lite),,"A nucleic acid sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2046,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A nucleic acid sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2047,Protein sequence record (lite),Sequence record lite (protein),"A protein sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2047,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A protein sequence and minimal metadata, typically an identifier of the sequence and/or a comment.",Sequence record lite (protein),,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2048,Report,Document,"A human-readable collection of information including annotation on a biological entity or phenomena, computer-generated reports of analysis of primary data (e.g. sequence or structural), and metadata (data about primary data) or any other free (essentially unformatted) text, as distinct from the primary data itself.|You can use this term by default for any textual report, in case you can't find another, more specific term. Reports may be generated automatically or collated by hand and can include metadata on the origin, source, history, ownership or location of some thing.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2048,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A human-readable collection of information including annotation on a biological entity or phenomena, computer-generated reports of analysis of primary data (e.g. sequence or structural), and metadata (data about primary data) or any other free (essentially unformatted) text, as distinct from the primary data itself.",Document,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2050,Molecular property (general),General molecular property,General data for a molecule.,FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_2050,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,General data for a molecule.,General molecular property,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2053,Structural data,,"Data concerning molecular structural data.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2053,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2085|http://edamontology.org/data_0883,,,,,Data concerning molecular structural data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2070,Sequence motif (nucleic acid),Nucleic acid sequence motif|RNA sequence motif|DNA sequence motif,A nucleotide sequence motif.,FALSE,,,http://edamontology.org/data_1353,,beta12orEarlier,,,,,,,,,,,,data_2070,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A nucleotide sequence motif.,Nucleic acid sequence motif,RNA sequence motif|DNA sequence motif,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2071,Sequence motif (protein),Protein sequence motif,An amino acid sequence motif.,FALSE,,,http://edamontology.org/data_1353,,beta12orEarlier,,,,,,,,,,,,data_2071,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An amino acid sequence motif.,Protein sequence motif,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2079,Search parameter,,"Some simple value controlling a search operation, typically a search of a database.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2079,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Some simple value controlling a search operation, typically a search of a database.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2080,Database search results,Database hits|Search results,A report of hits from searching a database of some type.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2080,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report of hits from searching a database of some type.,Database hits|Search results,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2081,Secondary structure,,The secondary structure assignment (predicted or real) of a nucleic acid or protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2081,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0883,,,,,The secondary structure assignment (predicted or real) of a nucleic acid or protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2082,Matrix,Array,"An array of numerical values.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2082,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An array of numerical values.,Array,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2083,Alignment data,,"Data concerning, extracted from, or derived from the analysis of molecular alignment of some type.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2083,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1394,,,,,"Data concerning, extracted from, or derived from the analysis of molecular alignment of some type.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2084,Nucleic acid report,,"An informative human-readable report about one or more specific nucleic acid molecules, derived from analysis of primary (sequence or structural) data.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2084,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative human-readable report about one or more specific nucleic acid molecules, derived from analysis of primary (sequence or structural) data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2085,Structure report,Structure-derived report,"An informative report on general information, properties or features of one or more molecular tertiary (3D) structures.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2085,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report on general information, properties or features of one or more molecular tertiary (3D) structures.",Structure-derived report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2086,Nucleic acid structure data,Nucleic acid structural property|Nucleic acid property (structural),"A report on nucleic acid structure-derived data, describing structural properties of a DNA molecule, or any other annotation or information about specific nucleic acid 3D structure(s).|This includes reports on the stiffness, curvature, twist/roll data or other conformational parameters or properties.",FALSE,,,http://edamontology.org/data_0912,,beta12orEarlier,,,,,,,,,,,,data_2086,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on nucleic acid structure-derived data, describing structural properties of a DNA molecule, or any other annotation or information about specific nucleic acid 3D structure(s).",Nucleic acid structural property|Nucleic acid property (structural),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2087,Molecular property,Physicochemical property|SO:0000400,"A report on the physical (e.g. structural) or chemical properties of molecules, or parts of a molecule.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2087,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report on the physical (e.g. structural) or chemical properties of molecules, or parts of a molecule.",Physicochemical property,,SO:0000400,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2088,DNA base structural data,,"Structural data for DNA base pairs or runs of bases, such as energy or angle data.",FALSE,,,http://edamontology.org/data_2086,,beta12orEarlier,,,,,,,,,,,,data_2088,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Structural data for DNA base pairs or runs of bases, such as energy or angle data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2090,Database entry version information,,"Information on a database (or ontology) entry version, such as name (or other identifier) or parent database, unique identifier of entry, data, author and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2090,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,"Information on a database (or ontology) entry version, such as name (or other identifier) or parent database, unique identifier of entry, data, author and so on.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2091,Accession,,"A persistent (stable) and unique identifier, typically identifying an object (entry) from a database.",FALSE,,,http://edamontology.org/data_0842,,beta12orEarlier,,,,,,,,,,,,data_2091,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A persistent (stable) and unique identifier, typically identifying an object (entry) from a database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2092,SNP,,single nucleotide polymorphism (SNP) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2092,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,single nucleotide polymorphism (SNP) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2093,Data reference,,"Reference to a dataset (or a cross-reference between two datasets), typically one or more entries in a biological database or ontology.|A list of database accessions or identifiers are usually included.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2093,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Reference to a dataset (or a cross-reference between two datasets), typically one or more entries in a biological database or ontology.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2098,Job identifier,,An identifier of a submitted job.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2098,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a submitted job.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2099,Name,http://www.w3.org/2000/01/rdf-schema#label|Symbolic name,"A name of a thing, which need not necessarily uniquely identify it.",FALSE,,,http://edamontology.org/data_0842,,beta12orEarlier,,,,,,,,,,,,data_2099,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.w3.org/2000/01/rdf-schema#label,,,"A name of a thing, which need not necessarily uniquely identify it.",Symbolic name,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2100,Type,,"A label (text token) describing the type of a thing, typically an enumerated string (a string with one of a limited set of values).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2100,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"A label (text token) describing the type of a thing, typically an enumerated string (a string with one of a limited set of values).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2101,User ID,,An identifier of a software end-user (typically a person).,FALSE,,,http://edamontology.org/data_2118,,beta12orEarlier,,,,,,,,,,,,data_2101,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a software end-user (typically a person).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2102,KEGG organism code,,A three-letter code used in the KEGG databases to uniquely identify organisms.,FALSE,,,http://edamontology.org/data_1154|http://edamontology.org/data_2909,,beta12orEarlier,,,,,,,,,,,,data_2102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A three-letter code used in the KEGG databases to uniquely identify organisms.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2103,Gene name (KEGG GENES),,Name of an entry (gene) from the KEGG GENES database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2103,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,Moby_namespace:GeneId,Name of an entry (gene) from the KEGG GENES database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,[a-zA-Z_0-9]+:[a-zA-Z_0-9.-]*,,
http://edamontology.org/data_2104,BioCyc ID,,Identifier of an object from one of the BioCyc databases.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2104,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an object from one of the BioCyc databases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2105,Compound ID (BioCyc),BioCyc compound identifier|BioCyc compound ID,Identifier of a compound from the BioCyc chemical compounds database.,FALSE,,,http://edamontology.org/data_2104|http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2105,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a compound from the BioCyc chemical compounds database.,BioCyc compound identifier|BioCyc compound ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2106,Reaction ID (BioCyc),,Identifier of a biological reaction from the BioCyc reactions database.,FALSE,,,http://edamontology.org/data_2104|http://edamontology.org/data_2108,,beta12orEarlier,,,,,,,,,,,,data_2106,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological reaction from the BioCyc reactions database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2107,Enzyme ID (BioCyc),BioCyc enzyme ID,Identifier of an enzyme from the BioCyc enzymes database.,FALSE,,,http://edamontology.org/data_2321|http://edamontology.org/data_2104,,beta12orEarlier,,,,,,,,,,,,data_2107,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an enzyme from the BioCyc enzymes database.,BioCyc enzyme ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2108,Reaction ID,,Identifier of a biological reaction from a database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2108,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological reaction from a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2109,Identifier (hybrid),,An identifier that is re-used for data objects of fundamentally different types (typically served from a single database).|This branch provides an alternative organisation of the concepts nested under 'Accession' and 'Name'. All concepts under here are already included under 'Accession' or 'Name'.,FALSE,,,http://edamontology.org/data_0842,,beta12orEarlier,,,,,,,,,,,,data_2109,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier that is re-used for data objects of fundamentally different types (typically served from a single database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2110,Molecular property identifier,,Identifier of a molecular property.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2110,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a molecular property.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2111,Codon usage table ID,Codon usage table identifier,"Identifier of a codon usage table, for example a genetic code.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2111,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a codon usage table, for example a genetic code.",Codon usage table identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2112,FlyBase primary identifier,,Primary identifier of an object from the FlyBase database.,FALSE,,,http://edamontology.org/data_1089,,beta12orEarlier,,,,,,,,,,,,data_2112,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Primary identifier of an object from the FlyBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2113,WormBase identifier,,Identifier of an object from the WormBase database.,FALSE,,,http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2113,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an object from the WormBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2114,WormBase wormpep ID,,Protein identifier used by WormBase database.,FALSE,,,http://edamontology.org/data_2907|http://edamontology.org/data_2113,,beta12orEarlier,,,,,,,,,,,,data_2114,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein identifier used by WormBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,CE[0-9]{5},,
http://edamontology.org/data_2116,Nucleic acid features (codon),,"An informative report on a trinucleotide sequence that encodes an amino acid including the triplet sequence, the encoded amino acid or whether it is a start or stop codon.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2116,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"An informative report on a trinucleotide sequence that encodes an amino acid including the triplet sequence, the encoded amino acid or whether it is a start or stop codon.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2117,Map identifier,,An identifier of a map of a molecular sequence.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2117,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a map of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2118,Person identifier,,An identifier of a software end-user (typically a person).,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2118,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a software end-user (typically a person).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2119,Nucleic acid identifier,,Name or other identifier of a nucleic acid molecule.,FALSE,,,http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_2119,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of a nucleic acid molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2126,Translation frame specification,,Frame for translation of DNA (3 forward and 3 reverse frames relative to a chromosome).,FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_2126,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Frame for translation of DNA (3 forward and 3 reverse frames relative to a chromosome).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2127,Genetic code identifier,,An identifier of a genetic code.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2127,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a genetic code.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2128,Genetic code name,,"Informal name for a genetic code, typically an organism name.",FALSE,,,http://edamontology.org/data_2127|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2128,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Informal name for a genetic code, typically an organism name.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2129,File format name,,"Name of a file format such as HTML, PNG, PDF, EMBL, GenBank and so on.",FALSE,,,http://edamontology.org/data_3358|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2129,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Name of a file format such as HTML, PNG, PDF, EMBL, GenBank and so on.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2130,Sequence profile type,,"A label (text token) describing a type of sequence profile such as frequency matrix, Gribskov profile, hidden Markov model etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2130,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"A label (text token) describing a type of sequence profile such as frequency matrix, Gribskov profile, hidden Markov model etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2131,Operating system name,,"Name of a computer operating system such as Linux, PC or Mac.",FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2131,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Name of a computer operating system such as Linux, PC or Mac.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2132,Mutation type,,"A type of point or block mutation, including insertion, deletion, change, duplication and moves.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2132,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A type of point or block mutation, including insertion, deletion, change, duplication and moves.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2133,Logical operator,,"A logical operator such as OR, AND, XOR, and NOT.",FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2133,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A logical operator such as OR, AND, XOR, and NOT.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2134,Results sort order,,"A control of the order of data that is output, for example the order of sequences in an alignment.|Possible options including sorting by score, rank, by increasing P-value (probability, i.e. most statistically significant hits given first) and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2134,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A control of the order of data that is output, for example the order of sequences in an alignment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2135,Toggle,,"A simple parameter that is a toggle (boolean value), typically a control for a modal tool.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2135,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A simple parameter that is a toggle (boolean value), typically a control for a modal tool.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2136,Sequence width,,The width of an output sequence or alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2136,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,The width of an output sequence or alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2137,Gap penalty,,A penalty for introducing or extending a gap in an alignment.,FALSE,,,http://edamontology.org/data_1394,,beta12orEarlier,,,,,,,,,,,,data_2137,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A penalty for introducing or extending a gap in an alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2139,Nucleic acid melting temperature,Melting temperature,"A temperature concerning nucleic acid denaturation, typically the temperature at which the two strands of a hybridised or double stranded nucleic acid (DNA or RNA/DNA) molecule separate.",FALSE,,,http://edamontology.org/data_2985,,beta12orEarlier,,,,,,,,,,,,data_2139,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A temperature concerning nucleic acid denaturation, typically the temperature at which the two strands of a hybridised or double stranded nucleic acid (DNA or RNA/DNA) molecule separate.",Melting temperature,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2140,Concentration,,The concentration of a chemical compound.,FALSE,,,http://edamontology.org/data_2050,,beta12orEarlier,,,,,,,,,,,,data_2140,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The concentration of a chemical compound.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2141,Window step size,,Size of the incremental 'step' a sequence window is moved over a sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2141,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1249,,,,,Size of the incremental 'step' a sequence window is moved over a sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2142,EMBOSS graph,,An image of a graph generated by the EMBOSS suite.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2142,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2968,,,,,An image of a graph generated by the EMBOSS suite.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2143,EMBOSS report,,An application report generated by the EMBOSS suite.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2143,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,An application report generated by the EMBOSS suite.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2145,Sequence offset,,An offset for a single-point sequence position.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2145,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An offset for a single-point sequence position.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2146,Threshold,,A value that serves as a threshold for a tool (usually to control scoring or output).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2146,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A value that serves as a threshold for a tool (usually to control scoring or output).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2147,Protein report (transcription factor),,"An informative report on a transcription factor protein.|This might include conformational or physicochemical properties, as well as sequence information for transcription factor(s) binding sites.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2147,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,An informative report on a transcription factor protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2149,Database category name,,The name of a category of biological or bioinformatics database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2149,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,The name of a category of biological or bioinformatics database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2150,Sequence profile name,,Name of a sequence profile.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2150,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1115,,,,,Name of a sequence profile.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2151,Color,,Specification of one or more colors.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2151,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Specification of one or more colors.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2152,Rendering parameter,,A parameter that is used to control rendering (drawing) to a device or image.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2152,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A parameter that is used to control rendering (drawing) to a device or image.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2154,Sequence name,,Any arbitrary name of a molecular sequence.,FALSE,,,http://edamontology.org/data_1063|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2154,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any arbitrary name of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2156,Date,,A temporal date.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2156,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A temporal date.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2157,Word composition,,Word composition data for a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2157,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1268|http://edamontology.org/data_1266,,,,,Word composition data for a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2160,Fickett testcode plot,,A plot of Fickett testcode statistic (identifying protein coding regions) in a nucleotide sequences.,FALSE,,,http://edamontology.org/data_2884,,beta12orEarlier,,,,,,,,,,,,data_2160,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of Fickett testcode statistic (identifying protein coding regions) in a nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2161,Sequence similarity plot,Sequence conservation report,"A plot of sequence similarities identified from word-matching or character comparison.|Use this concept for calculated substitution rates, relative site variability, data on sites with biased properties, highly conserved or very poorly conserved sites, regions, blocks etc.",FALSE,,,http://edamontology.org/data_0867|http://edamontology.org/data_2884,,beta12orEarlier,,,,,,,,,,,,data_2161,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of sequence similarities identified from word-matching or character comparison.,Sequence conservation report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2162,Helical wheel,,An image of peptide sequence sequence looking down the axis of the helix for highlighting amphipathicity and other properties.,FALSE,,,http://edamontology.org/data_1709,,beta12orEarlier,,,,,,,,,,,,data_2162,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image of peptide sequence sequence looking down the axis of the helix for highlighting amphipathicity and other properties.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2163,Helical net,,"An image of peptide sequence sequence in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix.|Useful for highlighting amphipathicity and other properties.",FALSE,,,http://edamontology.org/data_1709,,beta12orEarlier,,,,,,,,,,,,data_2163,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An image of peptide sequence sequence in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2164,Protein sequence properties plot,,A plot of general physicochemical properties of a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2164,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0897,,,,,A plot of general physicochemical properties of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2165,Protein ionisation curve,,A plot of pK versus pH for a protein.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_2165,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of pK versus pH for a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2166,Sequence composition plot,,A plot of character or word composition / frequency of a molecular sequence.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_2166,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A plot of character or word composition / frequency of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2167,Nucleic acid density plot,,Density plot (of base composition) for a nucleotide sequence.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_1261,,beta12orEarlier,,,,,,,,,,,,data_2167,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Density plot (of base composition) for a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2168,Sequence trace image,,Image of a sequence trace (nucleotide sequence versus probabilities of each of the 4 bases).,FALSE,,,http://edamontology.org/data_2969,,beta12orEarlier,,,,,,,,,,,,data_2168,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image of a sequence trace (nucleotide sequence versus probabilities of each of the 4 bases).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2169,Nucleic acid features (siRNA),,A report on siRNA duplexes in mRNA.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2169,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,A report on siRNA duplexes in mRNA.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2173,Sequence set (stream),,A collection of multiple molecular sequences and (typically) associated metadata that is intended for sequential processing.|This concept may be used for sequence sets that are expected to be read and processed a single sequence at a time.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2173,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,A collection of multiple molecular sequences and (typically) associated metadata that is intended for sequential processing.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2174,FlyBase secondary identifier,,Secondary identifier of an object from the FlyBase database.|Secondary identifier are used to handle entries that were merged with or split from other entries in the database.,FALSE,,,http://edamontology.org/data_1089,,beta12orEarlier,,,,,,,,,,,,data_2174,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Secondary identifier of an object from the FlyBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2176,Cardinality,,The number of a certain thing.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2176,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The number of a certain thing.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2177,Exactly 1,,A single thing.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2177,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,A single thing.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2178,1 or more,,One or more things.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2178,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,One or more things.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2179,Exactly 2,,Exactly two things.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2179,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,Exactly two things.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2180,2 or more,,Two or more things.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2180,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2337,,,,,Two or more things.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2190,Sequence checksum,Hash code|Hash value|Hash|Hash sum,"A fixed-size datum calculated (by using a hash function) for a molecular sequence, typically for purposes of error detection or indexing.",FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_2190,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A fixed-size datum calculated (by using a hash function) for a molecular sequence, typically for purposes of error detection or indexing.",Hash code|Hash value|Hash|Hash sum,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2191,Protein features report (chemical modifications),,chemical modification of a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2191,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,chemical modification of a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2192,Error,,Data on an error generated by computer system or tool.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2192,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,Data on an error generated by computer system or tool.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2193,Database entry metadata,,Basic information on any arbitrary database entry.,FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_2193,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Basic information on any arbitrary database entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2198,Gene cluster,,A cluster of similar genes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2198,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1246,,,,,A cluster of similar genes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2201,Sequence record full,,"A molecular sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2201,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A molecular sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2208,Plasmid identifier,,An identifier of a plasmid in a database.,FALSE,,,http://edamontology.org/data_2119,,beta12orEarlier,,,,,,,,,,,,data_2208,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a plasmid in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2209,Mutation ID,,A unique identifier of a specific mutation catalogued in a database.,FALSE,,,http://edamontology.org/data_2538|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2209,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a specific mutation catalogued in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2212,Mutation annotation (basic),,"Information describing the mutation itself, the organ site, tissue and type of lesion where the mutation has been identified, description of the patient origin and life-style.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2212,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"Information describing the mutation itself, the organ site, tissue and type of lesion where the mutation has been identified, description of the patient origin and life-style.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2213,Mutation annotation (prevalence),,"An informative report on the prevalence of mutation(s), including data on samples and mutation prevalence (e.g. by tumour type)..",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2213,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"An informative report on the prevalence of mutation(s), including data on samples and mutation prevalence (e.g. by tumour type)..",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2214,Mutation annotation (prognostic),,"An informative report on mutation prognostic data, such as information on patient cohort, the study settings and the results of the study.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2214,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"An informative report on mutation prognostic data, such as information on patient cohort, the study settings and the results of the study.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2215,Mutation annotation (functional),,"An informative report on the functional properties of mutant proteins including transcriptional activities, promotion of cell growth and tumorigenicity, dominant negative effects, capacity to induce apoptosis, cell-cycle arrest or checkpoints in human cells and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2215,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,"An informative report on the functional properties of mutant proteins including transcriptional activities, promotion of cell growth and tumorigenicity, dominant negative effects, capacity to induce apoptosis, cell-cycle arrest or checkpoints in human cells and so on.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2216,Codon number,,"The number of a codon, for instance, at which a mutation is located.",FALSE,,,http://edamontology.org/data_1016,,beta12orEarlier,,,,,,,,,,,,data_2216,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The number of a codon, for instance, at which a mutation is located.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2217,Tumor annotation,,"An informative report on a specific tumor including nature and origin of the sample, anatomic site, organ or tissue, tumor type, including morphology and/or histologic type, and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2217,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1622,,,,,"An informative report on a specific tumor including nature and origin of the sample, anatomic site, organ or tissue, tumor type, including morphology and/or histologic type, and so on.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2218,Server metadata,,"Basic information about a server on the web, such as an SRS server.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2218,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3106,,,,,"Basic information about a server on the web, such as an SRS server.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2219,Database field name,,The name of a field in a database.,FALSE,,,http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2219,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a field in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2220,Sequence cluster ID (SYSTERS),SYSTERS cluster ID,Unique identifier of a sequence cluster from the SYSTERS database.,FALSE,,,http://edamontology.org/data_1112,,beta12orEarlier,,,,,,,,,,,,data_2220,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a sequence cluster from the SYSTERS database.,SYSTERS cluster ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2223,Ontology metadata,,Data concerning a biological ontology.,FALSE,,,http://edamontology.org/data_2337,,beta12orEarlier,,,,,,,,,,,,data_2223,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning a biological ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2235,Raw SCOP domain classification,,Raw SCOP domain classification data files.|These are the parsable data files provided by SCOP.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2235,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0907,,,,,Raw SCOP domain classification data files.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2236,Raw CATH domain classification,,Raw CATH domain classification data files.|These are the parsable data files provided by CATH.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2236,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0907,,,,,Raw CATH domain classification data files.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2240,Heterogen annotation,,An informative report on the types of small molecules or 'heterogens' (non-protein groups) that are represented in PDB files.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2240,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report on the types of small molecules or 'heterogens' (non-protein groups) that are represented in PDB files.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2242,Phylogenetic property values,,Phylogenetic property values data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2242,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0871,,,,,Phylogenetic property values data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2245,Sequence set (bootstrapped),,A collection of sequences output from a bootstrapping (resampling) procedure.|Bootstrapping is often performed in phylogenetic analysis.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2245,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0850,,,,,A collection of sequences output from a bootstrapping (resampling) procedure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2247,Phylogenetic consensus tree,,A consensus phylogenetic tree derived from comparison of multiple trees.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2247,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0872,,,,,A consensus phylogenetic tree derived from comparison of multiple trees.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2248,Schema,,A data schema for organising or transforming data of some type.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2248,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,A data schema for organising or transforming data of some type.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2249,DTD,,A DTD (document type definition).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2249,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,A DTD (document type definition).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2250,XML Schema,,An XML Schema.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2250,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,An XML Schema.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2251,Relax-NG schema,,A relax-NG schema.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2251,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,A relax-NG schema.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2252,XSLT stylesheet,,An XSLT stylesheet.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2252,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,An XSLT stylesheet.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2253,Data resource definition name,,The name of a data type.,FALSE,,,http://edamontology.org/data_1084|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2253,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a data type.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2254,OBO file format name,,"Name of an OBO file format such as OBO-XML, plain and so on.",FALSE,,,http://edamontology.org/data_2129,,beta12orEarlier,,,,,,,,,,,,data_2254,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Name of an OBO file format such as OBO-XML, plain and so on.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2285,Gene ID (MIPS),MIPS genetic element identifier,Identifier for genetic elements in MIPS database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2285,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for genetic elements in MIPS database.,MIPS genetic element identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2288,Sequence identifier (protein),,An identifier of protein sequence(s) or protein sequence database entries.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2288,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1096,,,,,An identifier of protein sequence(s) or protein sequence database entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2289,Sequence identifier (nucleic acid),,An identifier of nucleotide sequence(s) or nucleotide sequence database entries.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2289,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1097,,,,,An identifier of nucleotide sequence(s) or nucleotide sequence database entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2290,EMBL accession,EMBL accession number|EMBL identifier|EMBL ID,An accession number of an entry from the EMBL sequence database.,FALSE,,,http://edamontology.org/data_1103,,beta12orEarlier,,,,,,,,,,,,data_2290,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession number of an entry from the EMBL sequence database.,EMBL accession number|EMBL identifier|EMBL ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2291,UniProt ID,UniProtKB identifier|UniProt entry name|UniProtKB entry name|UniProt identifier,An identifier of a polypeptide in the UniProt database.,FALSE,,,http://edamontology.org/data_2154,,beta12orEarlier,,,,,,,,,,,,data_2291,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a polypeptide in the UniProt database.,UniProtKB identifier|UniProt entry name|UniProtKB entry name|UniProt identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2292,GenBank accession,GenBank accession number|GenBank identifier|GenBank ID,Accession number of an entry from the GenBank sequence database.,FALSE,,,http://edamontology.org/data_1103,,beta12orEarlier,,,,,,,,,,,,data_2292,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the GenBank sequence database.,GenBank accession number|GenBank identifier|GenBank ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2293,Gramene secondary identifier,Gramene internal ID|Gramene internal identifier|Gramene secondary ID,Secondary (internal) identifier of a Gramene database entry.,FALSE,,,http://edamontology.org/data_2915,,beta12orEarlier,,,,,,,,,,,,data_2293,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Secondary (internal) identifier of a Gramene database entry.,Gramene internal ID|Gramene internal identifier|Gramene secondary ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2294,Sequence variation ID,,An identifier of an entry from a database of molecular sequence variation.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2294,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an entry from a database of molecular sequence variation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2295,Gene ID,Gene accession|Gene code,"A unique (and typically persistent) identifier of a gene in a database, that is (typically) different to the gene name/symbol.",FALSE,,,http://edamontology.org/data_1025|http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_2295,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique (and typically persistent) identifier of a gene in a database, that is (typically) different to the gene name/symbol.",Gene accession|Gene code,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2296,Gene name (AceView),,Name of an entry (gene) from the AceView genes database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2296,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Name of an entry (gene) from the AceView genes database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_2297,Gene ID (ECK),E. coli K-12 gene identifier|ECK accession,Identifier of an E. coli K-12 gene from EcoGene Database.,FALSE,,,http://edamontology.org/data_1795,,beta12orEarlier,,,,,,,,,,,,data_2297,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.geneontology.org/doc/GO.xrf_abbs: ECK,Identifier of an E. coli K-12 gene from EcoGene Database.,E. coli K-12 gene identifier|ECK accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2298,Gene ID (HGNC),HGNC ID,Identifier for a gene approved by the HUGO Gene Nomenclature Committee.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2298,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for a gene approved by the HUGO Gene Nomenclature Committee.,HGNC ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2299,Gene name,Allele name,"The name of a gene, (typically) assigned by a person and/or according to a naming scheme. It may contain white space characters and is typically more intuitive and readable than a gene symbol. It (typically) may be used to identify similar genes in different species and to derive a gene symbol.",FALSE,,,http://edamontology.org/data_1025|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2299,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The name of a gene, (typically) assigned by a person and/or according to a naming scheme. It may contain white space characters and is typically more intuitive and readable than a gene symbol. It (typically) may be used to identify similar genes in different species and to derive a gene symbol.",,Allele name,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2300,Gene name (NCBI),NCBI gene name,Name of an entry (gene) from the NCBI genes database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2300,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Name of an entry (gene) from the NCBI genes database.,NCBI gene name,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_2301,SMILES string,,A specification of a chemical structure in SMILES format.,FALSE,,,http://edamontology.org/data_0846,,beta12orEarlier,,,,,,,,,,,,data_2301,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A specification of a chemical structure in SMILES format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2302,STRING ID,,Unique identifier of an entry from the STRING database of protein-protein interactions.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the STRING database of protein-protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2307,Virus annotation,,An informative report on a specific virus.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2307,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2530,,,,,An informative report on a specific virus.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2308,Virus annotation (taxonomy),,An informative report on the taxonomy of a specific virus.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2308,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2530,,,,,An informative report on the taxonomy of a specific virus.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2309,Reaction ID (SABIO-RK),,Identifier of a biological reaction from the SABIO-RK reactions database.,FALSE,,,http://edamontology.org/data_2108,,beta12orEarlier,,,,,,,,,,,,data_2309,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological reaction from the SABIO-RK reactions database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2313,Carbohydrate report,,Annotation on or information derived from one or more specific carbohydrate 3D structure(s).,FALSE,,,http://edamontology.org/data_2085,,beta12orEarlier,,,,,,,,,,,,data_2313,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotation on or information derived from one or more specific carbohydrate 3D structure(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2314,GI number,gi number|NCBI GI number,"A series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the sequence record.|Nucleotide sequence GI number is shown in the VERSION field of the database record. Protein sequence GI number is shown in the CDS/db_xref field of a nucleotide database record, and the VERSION field of a protein database record.",FALSE,,,http://edamontology.org/data_2362,,beta12orEarlier,,,,,,,,,,,,data_2314,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the sequence record.,gi number|NCBI GI number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2315,NCBI version,NCBI accession.version|accession.version,"An identifier assigned to sequence records processed by NCBI, made of the accession number of the database record followed by a dot and a version number.|Nucleotide sequence version contains two letters followed by six digits, a dot, and a version number (or for older nucleotide sequence records, the format is one letter followed by five digits, a dot, and a version number). Protein sequence version contains three letters followed by five digits, a dot, and a version number.",FALSE,,,http://edamontology.org/data_2362,,beta12orEarlier,,,,,,,,,,,,data_2315,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An identifier assigned to sequence records processed by NCBI, made of the accession number of the database record followed by a dot and a version number.",NCBI accession.version|accession.version,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2316,Cell line name,,The name of a cell line.,FALSE,,,http://edamontology.org/data_1046,,beta12orEarlier,,,,,,,,,,,,data_2316,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a cell line.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2317,Cell line name (exact),,The name of a cell line.,FALSE,,,http://edamontology.org/data_2316,,beta12orEarlier,,,,,,,,,,,,data_2317,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a cell line.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2318,Cell line name (truncated),,The name of a cell line.,FALSE,,,http://edamontology.org/data_2316,,beta12orEarlier,,,,,,,,,,,,data_2318,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a cell line.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2319,Cell line name (no punctuation),,The name of a cell line.,FALSE,,,http://edamontology.org/data_2316,,beta12orEarlier,,,,,,,,,,,,data_2319,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a cell line.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2320,Cell line name (assonant),,The name of a cell line.,FALSE,,,http://edamontology.org/data_2316,,beta12orEarlier,,,,,,,,,,,,data_2320,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a cell line.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2321,Enzyme ID,Enzyme accession,"A unique, persistent identifier of an enzyme.",FALSE,,,http://edamontology.org/data_1010|http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2321,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique, persistent identifier of an enzyme.",Enzyme accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2325,REBASE enzyme number,,Identifier of an enzyme from the REBASE enzymes database.,FALSE,,,http://edamontology.org/data_2321,,beta12orEarlier,,,,,,,,,,,,data_2325,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an enzyme from the REBASE enzymes database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2326,DrugBank ID,,Unique identifier of a drug from the DrugBank database.,FALSE,,,http://edamontology.org/data_2895,,beta12orEarlier,,,,,,,,,,,,data_2326,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a drug from the DrugBank database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,DB[0-9]{5},,
http://edamontology.org/data_2327,GI number (protein),protein gi|protein gi number,"A unique identifier assigned to NCBI protein sequence records.|Nucleotide sequence GI number is shown in the VERSION field of the database record. Protein sequence GI number is shown in the CDS/db_xref field of a nucleotide database record, and the VERSION field of a protein database record.",FALSE,,,http://edamontology.org/data_2314,,beta12orEarlier,,,,,,,,,,,,data_2327,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier assigned to NCBI protein sequence records.,protein gi|protein gi number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2335,Bit score,,"A score derived from the alignment of two sequences, which is then normalised with respect to the scoring system.|Bit scores are normalised with respect to the scoring system and therefore can be used to compare alignment scores from different searches.",FALSE,,,http://edamontology.org/data_1413,,beta12orEarlier,,,,,,,,,,,,data_2335,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A score derived from the alignment of two sequences, which is then normalised with respect to the scoring system.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2336,Translation phase specification,Phase,"Phase for translation of DNA (0, 1 or 2) relative to a fragment of the coding sequence.",FALSE,,,http://edamontology.org/data_2534,,beta12orEarlier,,,,,,,,,,,,data_2336,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Phase for translation of DNA (0, 1 or 2) relative to a fragment of the coding sequence.",Phase,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2337,Resource metadata,Provenance metadata,"Data concerning or describing some core computational resource, as distinct from primary data.  This includes metadata on the origin, source, history, ownership or location of some thing.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2337,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning or describing some core computational resource, as distinct from primary data.  This includes metadata on the origin, source, history, ownership or location of some thing.",Provenance metadata,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2338,Ontology identifier,,Any arbitrary identifier of an ontology.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2338,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any arbitrary identifier of an ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2339,Ontology concept name,,The name of a concept in an ontology.,FALSE,,,http://edamontology.org/data_3025|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2339,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a concept in an ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2340,Genome build identifier,,An identifier of a build of a particular genome.,FALSE,,,http://edamontology.org/data_2749,,beta12orEarlier,,,,,,,,,,,,data_2340,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a build of a particular genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2342,Pathway or network name,,The name of a biological pathway or network.,FALSE,,,http://edamontology.org/data_1082,,beta12orEarlier,,,,,,,,,,,,data_2342,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a biological pathway or network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2343,Pathway ID (KEGG),KEGG pathway ID,Identifier of a pathway from the KEGG pathway database.,FALSE,,,http://edamontology.org/data_2365|http://edamontology.org/data_1154,,beta12orEarlier,,,,,,,,,,,,data_2343,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the KEGG pathway database.,KEGG pathway ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[a-zA-Z_0-9]{2,3}[0-9]{5}",,
http://edamontology.org/data_2344,Pathway ID (NCI-Nature),,Identifier of a pathway from the NCI-Nature pathway database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_2344,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the NCI-Nature pathway database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9]+,,
http://edamontology.org/data_2345,Pathway ID (ConsensusPathDB),,Identifier of a pathway from the ConsensusPathDB pathway database.,FALSE,,,http://edamontology.org/data_2365|http://edamontology.org/data_2917,,beta12orEarlier,,,,,,,,,,,,data_2345,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the ConsensusPathDB pathway database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2346,Sequence cluster ID (UniRef),UniRef entry accession|UniRef cluster id,Unique identifier of an entry from the UniRef database.,FALSE,,,http://edamontology.org/data_1112,,beta12orEarlier,,,,,,,,,,,,data_2346,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the UniRef database.,UniRef entry accession|UniRef cluster id,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2347,Sequence cluster ID (UniRef100),UniRef100 cluster id|UniRef100 entry accession,Unique identifier of an entry from the UniRef100 database.,FALSE,,,http://edamontology.org/data_2346,,beta12orEarlier,,,,,,,,,,,,data_2347,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the UniRef100 database.,UniRef100 cluster id|UniRef100 entry accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2348,Sequence cluster ID (UniRef90),UniRef90 cluster id|UniRef90 entry accession,Unique identifier of an entry from the UniRef90 database.,FALSE,,,http://edamontology.org/data_2346,,beta12orEarlier,,,,,,,,,,,,data_2348,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the UniRef90 database.,UniRef90 cluster id|UniRef90 entry accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2349,Sequence cluster ID (UniRef50),UniRef50 entry accession|UniRef50 cluster id,Unique identifier of an entry from the UniRef50 database.,FALSE,,,http://edamontology.org/data_2346,,beta12orEarlier,,,,,,,,,,,,data_2349,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the UniRef50 database.,UniRef50 entry accession|UniRef50 cluster id,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2353,Ontology data,Ontological data,"Data concerning or derived from an ontology.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2353,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning or derived from an ontology.,Ontological data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2354,RNA family report,RNA family annotation,An informative report on a specific RNA family or other group of classified RNA sequences.,FALSE,,,http://edamontology.org/data_3148,,beta12orEarlier,,,,,,,,,,,,data_2354,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a specific RNA family or other group of classified RNA sequences.,RNA family annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2355,RNA family identifier,,"Identifier of an RNA family, typically an entry from a RNA sequence classification database.",FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2355,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of an RNA family, typically an entry from a RNA sequence classification database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2356,RFAM accession,,Stable accession number of an entry (RNA family) from the RFAM database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2355,,beta12orEarlier,,,,,,,,,,,,data_2356,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Stable accession number of an entry (RNA family) from the RFAM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2357,Protein signature type,,A label (text token) describing a type of protein family signature (sequence classifier) from the InterPro database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2357,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,A label (text token) describing a type of protein family signature (sequence classifier) from the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2358,Domain-nucleic acid interaction report,,An informative report on protein domain-DNA/RNA interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2358,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0906,,,,,An informative report on protein domain-DNA/RNA interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2359,Domain-domain interactions,,An informative report on protein domain-protein domain interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2359,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0906,,,,,An informative report on protein domain-protein domain interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2360,Domain-domain interaction (indirect),,Data on indirect protein domain-protein domain interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2360,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0906,,,,,Data on indirect protein domain-protein domain interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2362,Sequence accession (hybrid),,Accession number of a nucleotide or protein sequence database entry.,FALSE,,,http://edamontology.org/data_1093,,beta12orEarlier,,,,,,,,,,,,data_2362,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a nucleotide or protein sequence database entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2363,2D PAGE data,,"Data concerning two-dimensional polygel electrophoresis.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2363,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning two-dimensional polygel electrophoresis.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2364,2D PAGE report,,"two-dimensional gel electrophoresis experiments, gels or spots in a gel.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2364,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"two-dimensional gel electrophoresis experiments, gels or spots in a gel.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2365,Pathway or network accession,,"A persistent, unique identifier of a biological pathway or network (typically a database entry).",FALSE,,,http://edamontology.org/data_1082|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2365,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A persistent, unique identifier of a biological pathway or network (typically a database entry).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2366,Secondary structure alignment,,Alignment of the (1D representations of) secondary structure of two or more molecules.,FALSE,,,http://edamontology.org/data_1916,,beta12orEarlier,,,,,,,,,,,,data_2366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment of the (1D representations of) secondary structure of two or more molecules.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2367,ASTD ID,,Identifier of an object from the ASTD database.,FALSE,,,http://edamontology.org/data_1097|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2367,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an object from the ASTD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2368,ASTD ID (exon),,Identifier of an exon from the ASTD database.,FALSE,,,http://edamontology.org/data_2367,,beta12orEarlier,,,,,,,,,,,,data_2368,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an exon from the ASTD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2369,ASTD ID (intron),,Identifier of an intron from the ASTD database.,FALSE,,,http://edamontology.org/data_2367,,beta12orEarlier,,,,,,,,,,,,data_2369,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an intron from the ASTD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2370,ASTD ID (polya),,Identifier of a polyA signal from the ASTD database.,FALSE,,,http://edamontology.org/data_2367,,beta12orEarlier,,,,,,,,,,,,data_2370,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a polyA signal from the ASTD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2371,ASTD ID (tss),,Identifier of a transcription start site from the ASTD database.,FALSE,,,http://edamontology.org/data_2367,,beta12orEarlier,,,,,,,,,,,,data_2371,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a transcription start site from the ASTD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2372,2D PAGE spot report,,An informative report on individual spot(s) from a two-dimensional (2D PAGE) gel.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2372,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on individual spot(s) from a two-dimensional (2D PAGE) gel.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2373,Spot ID,,Unique identifier of a spot from a two-dimensional (protein) gel.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2373,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a spot from a two-dimensional (protein) gel.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2374,Spot serial number,,Unique identifier of a spot from a two-dimensional (protein) gel in the SWISS-2DPAGE database.,FALSE,,,http://edamontology.org/data_2373,,beta12orEarlier,,,,,,,,,,,,data_2374,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a spot from a two-dimensional (protein) gel in the SWISS-2DPAGE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2375,Spot ID (HSC-2DPAGE),,Unique identifier of a spot from a two-dimensional (protein) gel from a HSC-2DPAGE database.,FALSE,,,http://edamontology.org/data_2373,,beta12orEarlier,,,,,,,,,,,,data_2375,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a spot from a two-dimensional (protein) gel from a HSC-2DPAGE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2378,Protein-motif interaction,,Data on the interaction of a protein (or protein domain) with specific structural (3D) and/or sequence motifs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2378,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0906,,,,,Data on the interaction of a protein (or protein domain) with specific structural (3D) and/or sequence motifs.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2379,Strain identifier,,"Identifier of a strain of an organism variant, typically a plant, virus or bacterium.",FALSE,,,http://edamontology.org/data_1869,,beta12orEarlier,,,,,,,,,,,,data_2379,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a strain of an organism variant, typically a plant, virus or bacterium.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2380,CABRI accession,,A unique identifier of an item from the CABRI database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2380,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of an item from the CABRI database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2381,Experiment report (genotyping),,"Report of genotype experiment including case control, population, and family studies. These might use array based methods and re-sequencing methods.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2381,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report of genotype experiment including case control, population, and family studies. These might use array based methods and re-sequencing methods.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2382,Genotype experiment ID,,Identifier of an entry from a database of genotype experiment metadata.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2382,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of genotype experiment metadata.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2383,EGA accession,,Identifier of an entry from the EGA database.,FALSE,,,http://edamontology.org/data_2382,,beta12orEarlier,,,,,,,,,,,,data_2383,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the EGA database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2384,IPI protein ID,,Identifier of a protein entry catalogued in the International Protein Index (IPI) database.,FALSE,,,http://edamontology.org/data_1096,,beta12orEarlier,,,,,,,,,,,,data_2384,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein entry catalogued in the International Protein Index (IPI) database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,IPI[0-9]{8},,
http://edamontology.org/data_2385,RefSeq accession (protein),RefSeq protein ID,Accession number of a protein from the RefSeq database.,FALSE,,,http://edamontology.org/data_1098,,beta12orEarlier,,,,,,,,,,,,data_2385,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a protein from the RefSeq database.,RefSeq protein ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2386,EPD ID,EPD identifier,Identifier of an entry (promoter) from the EPD database.,FALSE,,,http://edamontology.org/data_2727,,beta12orEarlier,,,,,,,,,,,,data_2386,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry (promoter) from the EPD database.,EPD identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2387,TAIR accession,,Identifier of an entry from the TAIR database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2387,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the TAIR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2388,TAIR accession (At gene),,Identifier of an Arabidopsis thaliana gene from the TAIR database.,FALSE,,,http://edamontology.org/data_1037,,beta12orEarlier,,,,,,,,,,,,data_2388,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an Arabidopsis thaliana gene from the TAIR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2389,UniSTS accession,,Identifier of an entry from the UniSTS database.,FALSE,,,http://edamontology.org/data_1097,,beta12orEarlier,,,,,,,,,,,,data_2389,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the UniSTS database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2390,UNITE accession,,Identifier of an entry from the UNITE database.,FALSE,,,http://edamontology.org/data_1097,,beta12orEarlier,,,,,,,,,,,,data_2390,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the UNITE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2391,UTR accession,,Identifier of an entry from the UTR database.,FALSE,,,http://edamontology.org/data_1097,,beta12orEarlier,,,,,,,,,,,,data_2391,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the UTR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2392,UniParc accession,UPI|UniParc ID,Accession number of a UniParc (protein sequence) database entry.,FALSE,,,http://edamontology.org/data_1096,,beta12orEarlier,,,,,,,,,,,,data_2392,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a UniParc (protein sequence) database entry.,UPI|UniParc ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,UPI[A-F0-9]{10},,
http://edamontology.org/data_2393,mFLJ/mKIAA number,,Identifier of an entry from the Rouge or HUGE databases.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2393,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the Rouge or HUGE databases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2395,Fungi annotation,,An informative report on a specific fungus.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2395,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2530,,,,,An informative report on a specific fungus.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2396,Fungi annotation (anamorph),,An informative report on a specific fungus anamorph.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2396,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2530,,,,,An informative report on a specific fungus anamorph.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2397,Gene features report (exon),,exons in a nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2397,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,exons in a nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2398,Ensembl protein ID,Protein ID (Ensembl)|Ensembl ID (protein),Unique identifier for a protein from the Ensembl database.,FALSE,,,http://edamontology.org/data_2610|http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2398,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a protein from the Ensembl database.,Protein ID (Ensembl)|Ensembl ID (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2399,Gene transcriptional features report,,transcription of DNA into RNA including the regulation of transcription.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2399,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,transcription of DNA into RNA including the regulation of transcription.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_3134,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2400,Toxin annotation,,An informative report on a specific toxin.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2400,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report on a specific toxin.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2401,Protein report (membrane protein),,An informative report on a membrane protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2401,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1277,,,,,An informative report on a membrane protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2402,Protein-drug interaction report,,An informative report on tentative or known protein-drug interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2402,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on tentative or known protein-drug interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1566,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_2522,Map data,,"Data concerning a map of molecular sequence(s).|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2522,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2019|http://edamontology.org/data_1274,,,,,Data concerning a map of molecular sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2523,Phylogenetic data,,"Data concerning phylogeny, typically of molecular sequences, including reports of information concerning or derived from a phylogenetic tree, or from comparing two or more phylogenetic trees.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2523,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning phylogeny, typically of molecular sequences, including reports of information concerning or derived from a phylogenetic tree, or from comparing two or more phylogenetic trees.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2524,Protein data,,"Data concerning one or more protein molecules.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2524,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0896,,,,,Data concerning one or more protein molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2525,Nucleic acid data,,"Data concerning one or more nucleic acid molecules.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2525,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2084,,,,,Data concerning one or more nucleic acid molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2526,Text data,Scientific text data|Article data,"Data concerning, extracted from, or derived from the analysis of a scientific text (or texts) such as a full text article from a scientific journal.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation. It includes concepts that are best described as scientific text or closely concerned with or derived from text.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2526,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning, extracted from, or derived from the analysis of a scientific text (or texts) such as a full text article from a scientific journal.",,Scientific text data|Article data,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2527,Parameter,,Typically a simple numerical or string value that controls the operation of a tool.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2527,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Typically a simple numerical or string value that controls the operation of a tool.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/data_2528,Molecular data,,"Data concerning a specific type of molecule.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2528,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2087,,,,,Data concerning a specific type of molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2529,Molecule report,,An informative report on a specific molecule.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2529,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2084|http://edamontology.org/data_0896,,,,,An informative report on a specific molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2530,Organism report,Organism annotation,An informative report on a specific organism.,FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2530,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a specific organism.,Organism annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2531,Experiment report,Experiment metadata|Experiment annotation,"Annotation on a wet lab experiment, such as experimental conditions.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2531,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation on a wet lab experiment, such as experimental conditions.",,Experiment metadata|Experiment annotation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2533,Nucleic acid features report (mutation),,DNA mutation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2533,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA mutation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2534,Sequence attribute,Sequence parameter,"An attribute of a molecular sequence, possibly in reference to some other sequence.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2534,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An attribute of a molecular sequence, possibly in reference to some other sequence.",,Sequence parameter,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2535,Sequence tag profile,Sequencing-based expression profile|Sequence tag profile (with gene assignment),"Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment.  In all cases this is a list of short sequence tags and the number of times it is observed.|This includes tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.|SAGE, MPSS and SBS experiments are usually performed to study gene expression.  The sequence tags are typically subsequently annotated (after a database search) with the mRNA (and therefore gene) the tag was extracted from.",FALSE,,,http://edamontology.org/data_0928,,beta12orEarlier,,,,,,,,,,,,data_2535,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment.  In all cases this is a list of short sequence tags and the number of times it is observed.",Sequencing-based expression profile,Sequence tag profile (with gene assignment),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2536,Mass spectrometry data,,Data concerning a mass spectrometry measurement.,FALSE,,,http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_2536,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning a mass spectrometry measurement.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2537,Protein structure raw data,,"Raw data from experimental methods for determining protein structure.|This is a broad data type and is used a placeholder for other, more specific types.  It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",FALSE,,,http://edamontology.org/data_3108,,beta12orEarlier,,,,,,,,,,,,data_2537,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw data from experimental methods for determining protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2538,Mutation identifier,,An identifier of a mutation.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2538,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a mutation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2539,Alignment data,,"Data concerning an alignment of two or more molecular sequences, structures or derived data.|This is a broad data type and is used a placeholder for other, more specific types.  This includes entities derived from sequences and structures such as motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2539,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2083|http://edamontology.org/data_1916,,,,,"Data concerning an alignment of two or more molecular sequences, structures or derived data.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2540,Data index data,,"Data concerning an index of data.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2540,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0955,,,,,Data concerning an index of data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2563,Amino acid name (single letter),,"Single letter amino acid identifier, e.g. G.",FALSE,,,http://edamontology.org/data_1006,,beta12orEarlier,,,,,,,,,,,,data_2563,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Single letter amino acid identifier, e.g. G.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2564,Amino acid name (three letter),,"Three letter amino acid identifier, e.g. GLY.",FALSE,,,http://edamontology.org/data_1006,,beta12orEarlier,,,,,,,,,,,,data_2564,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Three letter amino acid identifier, e.g. GLY.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2565,Amino acid name (full name),,"Full name of an amino acid, e.g. Glycine.",FALSE,,,http://edamontology.org/data_1006,,beta12orEarlier,,,,,,,,,,,,data_2565,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Full name of an amino acid, e.g. Glycine.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2576,Toxin identifier,,Identifier of a toxin.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_2576,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a toxin.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2578,ArachnoServer ID,,Unique identifier of a toxin from the ArachnoServer database.,FALSE,,,http://edamontology.org/data_2897,,beta12orEarlier,,,,,,,,,,,,data_2578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a toxin from the ArachnoServer database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2579,Expressed gene list,,A simple summary of expressed genes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2579,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2872,,,,,A simple summary of expressed genes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2580,BindingDB Monomer ID,,Unique identifier of a monomer from the BindingDB database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2580,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a monomer from the BindingDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2581,GO concept name,,The name of a concept from the GO ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2581,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2339,,,,,The name of a concept from the GO ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2582,GO concept ID (biological process),,An identifier of a 'biological process' concept from the the Gene Ontology.,FALSE,,,http://edamontology.org/data_1176,,beta12orEarlier,,,,,,,,,,,,data_2582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a 'biological process' concept from the the Gene Ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]{7}|GO:[0-9]{7},,
http://edamontology.org/data_2583,GO concept ID (molecular function),,An identifier of a 'molecular function' concept from the the Gene Ontology.,FALSE,,,http://edamontology.org/data_1176,,beta12orEarlier,,,,,,,,,,,,data_2583,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a 'molecular function' concept from the the Gene Ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]{7}|GO:[0-9]{7},,
http://edamontology.org/data_2584,GO concept name (cellular component),,The name of a concept for a cellular component from the GO ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2584,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2339,,,,,The name of a concept for a cellular component from the GO ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2586,Northern blot image,,An image arising from a Northern Blot experiment.,FALSE,,,http://edamontology.org/data_3424,,beta12orEarlier,,,,,,,,,,,,data_2586,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image arising from a Northern Blot experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2587,Blot ID,,Unique identifier of a blot from a Northern Blot.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2587,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a blot from a Northern Blot.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2588,BlotBase blot ID,,Unique identifier of a blot from a Northern Blot from the BlotBase database.,FALSE,,,http://edamontology.org/data_2587,,beta12orEarlier,,,,,,,,,,,,data_2588,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a blot from a Northern Blot from the BlotBase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2589,Hierarchy,Hierarchy annotation,"Raw data on a biological hierarchy, describing the hierarchy proper, hierarchy components and possibly associated annotation.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2589,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Raw data on a biological hierarchy, describing the hierarchy proper, hierarchy components and possibly associated annotation.",Hierarchy annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2590,Hierarchy identifier,,Identifier of an entry from a database of biological hierarchies.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2590,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2891,,,,,Identifier of an entry from a database of biological hierarchies.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2591,Brite hierarchy ID,,Identifier of an entry from the Brite database of biological hierarchies.,FALSE,,,http://edamontology.org/data_2891,,beta12orEarlier,,,,,,,,,,,,data_2591,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the Brite database of biological hierarchies.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2592,Cancer type,,A type (represented as a string) of cancer.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2592,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2099,,,,,A type (represented as a string) of cancer.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2593,BRENDA organism ID,,A unique identifier for an organism used in the BRENDA database.,FALSE,,,http://edamontology.org/data_2908,,beta12orEarlier,,,,,,,,,,,,data_2593,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier for an organism used in the BRENDA database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2594,UniGene taxon,UniGene organism abbreviation,The name of a taxon using the controlled vocabulary of the UniGene database.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_2594,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a taxon using the controlled vocabulary of the UniGene database.,UniGene organism abbreviation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2595,UTRdb taxon,,The name of a taxon using the controlled vocabulary of the UTRdb database.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_2595,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a taxon using the controlled vocabulary of the UTRdb database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2596,Catalogue ID,Catalogue identifier,An identifier of a catalogue of biological resources.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2596,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a catalogue of biological resources.,Catalogue identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2597,CABRI catalogue name,,The name of a catalogue of biological resources from the CABRI database.,FALSE,,,http://edamontology.org/data_2596|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2597,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a catalogue of biological resources from the CABRI database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2598,Secondary structure alignment metadata,,An informative report on protein secondary structure alignment-derived data or metadata.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2598,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0867,,,,,An informative report on protein secondary structure alignment-derived data or metadata.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2599,Molecule interaction report,,"An informative report on the physical, chemical or other information concerning the interaction of two or more molecules (or parts of molecules).",FALSE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2599,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0906,,,,,"An informative report on the physical, chemical or other information concerning the interaction of two or more molecules (or parts of molecules).",,,,,,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2600,Pathway or network,Network|Pathway,Primary data about a specific biological pathway or network (the nodes and connections within the pathway or network).,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2600,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Primary data about a specific biological pathway or network (the nodes and connections within the pathway or network).,Network|Pathway,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2601,Small molecule data,,"Data concerning one or more small molecules.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2601,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,Data concerning one or more small molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2602,Genotype and phenotype data,,"Data concerning a particular genotype, phenotype or a genotype / phenotype relation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2602,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0920,,,,,"Data concerning a particular genotype, phenotype or a genotype / phenotype relation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2603,Gene expression data,Non-coding RNA quantification data|Transcriptome profile|Gene product quantification data|mRNA quantification data|Non-coding RNA profile|mRNA profile|Transcriptome quantification data|RNA quantification data|Microarray data|RNA-seq data|Gene product profile|Gene transcription quantification data|Gene transcription profile|RNA profile|Proteome profile|Protein profile|Protein quantification data|Proteome quantification data,"Image, hybridisation or some other data arising from a study of gene expression, typically profiling or quantification.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2603,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Image, hybridisation or some other data arising from a study of gene expression, typically profiling or quantification.",,Non-coding RNA quantification data|Transcriptome profile|Gene product quantification data|mRNA quantification data|Non-coding RNA profile|mRNA profile|Transcriptome quantification data|RNA quantification data|Microarray data|RNA-seq data|Gene product profile|Gene transcription quantification data|Gene transcription profile|RNA profile,Proteome profile|Protein profile|Protein quantification data|Proteome quantification data,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2605,Compound ID (KEGG),KEGG compound ID|KEGG compound identifier,Unique identifier of a chemical compound from the KEGG database.,FALSE,,,http://edamontology.org/data_1154|http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2605,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a chemical compound from the KEGG database.,KEGG compound ID|KEGG compound identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,C[0-9]+,,
http://edamontology.org/data_2606,RFAM name,,Name (not necessarily stable) an entry (RNA family) from the RFAM database.,FALSE,,,http://edamontology.org/data_2355|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2606,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name (not necessarily stable) an entry (RNA family) from the RFAM database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2608,Reaction ID (KEGG),,Identifier of a biological reaction from the KEGG reactions database.,FALSE,,,http://edamontology.org/data_1154|http://edamontology.org/data_2108,,beta12orEarlier,,,,,,,,,,,,data_2608,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological reaction from the KEGG reactions database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,R[0-9]+,,
http://edamontology.org/data_2609,Drug ID (KEGG),,Unique identifier of a drug from the KEGG Drug database.,FALSE,,,http://edamontology.org/data_2895|http://edamontology.org/data_1154,,beta12orEarlier,,,,,,,,,,,,data_2609,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a drug from the KEGG Drug database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,D[0-9]+,,
http://edamontology.org/data_2610,Ensembl ID,Ensembl IDs,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl database.",FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2610,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl database.",Ensembl IDs,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,ENS[A-Z]*[FPTG][0-9]{11},,
http://edamontology.org/data_2611,ICD identifier,,An identifier of a disease from the International Classification of Diseases (ICD) database.,FALSE,,,http://edamontology.org/data_1150,,beta12orEarlier,,,,,,,,,,,,data_2611,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a disease from the International Classification of Diseases (ICD) database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[A-Z][0-9]+(.[-[0-9]+])?,,
http://edamontology.org/data_2612,Sequence cluster ID (CluSTr),CluSTr ID|CluSTr cluster ID,Unique identifier of a sequence cluster from the CluSTr database.,FALSE,,,http://edamontology.org/data_1112,,beta12orEarlier,,,,,,,,,,,,data_2612,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a sequence cluster from the CluSTr database.,CluSTr ID|CluSTr cluster ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[0-9A-Za-z]+:[0-9]+:[0-9]{1,5}(.[0-9])?",,
http://edamontology.org/data_2613,KEGG Glycan ID,,Unique identifier of a glycan ligand from the KEGG GLYCAN database (a subset of KEGG LIGAND).,FALSE,,,http://edamontology.org/data_2900|http://edamontology.org/data_1154,,beta12orEarlier,,,,,,,,,,,,data_2613,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a glycan ligand from the KEGG GLYCAN database (a subset of KEGG LIGAND).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,G[0-9]+,,
http://edamontology.org/data_2614,TCDB ID,TC number,A unique identifier of a family from the transport classification database (TCDB) of membrane transport proteins.|OBO file for regular expression.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_2614,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a family from the transport classification database (TCDB) of membrane transport proteins.,TC number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+.[A-Z]\.[0-9]+\.[0-9]+\.[0-9]+,,
http://edamontology.org/data_2615,MINT ID,,Unique identifier of an entry from the MINT database of protein-protein interactions.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2615,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the MINT database of protein-protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"MINT-[0-9]{1,5}",,
http://edamontology.org/data_2616,DIP ID,,Unique identifier of an entry from the DIP database of protein-protein interactions.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2616,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the DIP database of protein-protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,DIP[:\-][0-9]{3}[EN],,
http://edamontology.org/data_2617,Signaling Gateway protein ID,,Unique identifier of a protein listed in the UCSD-Nature Signaling Gateway Molecule Pages database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2617,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a protein listed in the UCSD-Nature Signaling Gateway Molecule Pages database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,A[0-9]{6},,
http://edamontology.org/data_2618,Protein modification ID,,Identifier of a protein modification catalogued in a database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2618,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein modification catalogued in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2619,RESID ID,,Identifier of a protein modification catalogued in the RESID database.,FALSE,,,http://edamontology.org/data_2618,,beta12orEarlier,,,,,,,,,,,,data_2619,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein modification catalogued in the RESID database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,AA[0-9]{4},,
http://edamontology.org/data_2620,RGD ID,,Identifier of an entry from the RGD database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2620,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the RGD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[0-9]{4,7}",,
http://edamontology.org/data_2621,TAIR accession (protein),,Identifier of a protein sequence from the TAIR database.,FALSE,,,http://edamontology.org/data_1096|http://edamontology.org/data_2387,,beta12orEarlier,,,,,,,,,,,,data_2621,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein sequence from the TAIR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,AASequence:[0-9]{10},,
http://edamontology.org/data_2622,Compound ID (HMDB),HMDB ID,Identifier of a small molecule metabolite from the Human Metabolome Database (HMDB).,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2622,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a small molecule metabolite from the Human Metabolome Database (HMDB).,HMDB ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,HMDB[0-9]{5},,
http://edamontology.org/data_2625,LIPID MAPS ID,LM ID,Identifier of an entry from the LIPID MAPS database.,FALSE,,,http://edamontology.org/data_2905,,beta12orEarlier,,,,,,,,,,,,data_2625,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the LIPID MAPS database.,LM ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4})?,,
http://edamontology.org/data_2626,PeptideAtlas ID,,Identifier of a peptide from the PeptideAtlas peptide databases.,FALSE,,,http://edamontology.org/data_2906,,beta12orEarlier,,,,,,,,,,,,data_2626,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDBML:pdbx_PDB_strand_id,Identifier of a peptide from the PeptideAtlas peptide databases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PAp[0-9]{8},,
http://edamontology.org/data_2627,Molecular interaction ID,,Identifier of a report of molecular interactions from a database (typically).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2627,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a report of molecular interactions from a database (typically).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1074,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/data_2628,BioGRID interaction ID,,A unique identifier of an interaction from the BioGRID database.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2628,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of an interaction from the BioGRID database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2629,Enzyme ID (MEROPS),MEROPS ID,Unique identifier of a peptidase enzyme from the MEROPS database.,FALSE,,,http://edamontology.org/data_2321,,beta12orEarlier,,,,,,,,,,,,data_2629,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a peptidase enzyme from the MEROPS database.,MEROPS ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,S[0-9]{2}.[0-9]{3},,
http://edamontology.org/data_2630,Mobile genetic element ID,,An identifier of a mobile genetic element.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2630,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a mobile genetic element.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2631,ACLAME ID,,An identifier of a mobile genetic element from the Aclame database.,FALSE,,,http://edamontology.org/data_2630,,beta12orEarlier,,,,,,,,,,,,data_2631,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a mobile genetic element from the Aclame database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,mge:[0-9]+,,
http://edamontology.org/data_2632,SGD ID,,Identifier of an entry from the Saccharomyces genome database (SGD).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2632,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the Saccharomyces genome database (SGD).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PWY[a-zA-Z_0-9]{2}-[0-9]{3},,
http://edamontology.org/data_2633,Book ID,,Unique identifier of a book.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2633,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a book.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2634,ISBN,,The International Standard Book Number (ISBN) is for identifying printed books.,FALSE,,,http://edamontology.org/data_2633,,beta12orEarlier,,,,,,,,,,,,data_2634,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The International Standard Book Number (ISBN) is for identifying printed books.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"(ISBN)?(-13|-10)?[:]?[ ]?([0-9]{2,3}[ -]?)?[0-9]{1,5}[ -]?[0-9]{1,7}[ -]?[0-9]{1,6}[ -]?([0-9]|X)",,
http://edamontology.org/data_2635,Compound ID (3DMET),3DMET ID,Identifier of a metabolite from the 3DMET database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2635,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a metabolite from the 3DMET database.,3DMET ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,B[0-9]{5},,
http://edamontology.org/data_2636,MatrixDB interaction ID,,A unique identifier of an interaction from the MatrixDB database.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2636,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of an interaction from the MatrixDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,([A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9])_.*|([OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*),,
http://edamontology.org/data_2637,cPath ID,,"A unique identifier for pathways, reactions, complexes and small molecules from the cPath (Pathway Commons) database.|These identifiers are unique within the cPath database, however, they are not stable between releases.",FALSE,,,http://edamontology.org/data_2365|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2637,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique identifier for pathways, reactions, complexes and small molecules from the cPath (Pathway Commons) database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2638,PubChem bioassay ID,,Identifier of an assay from the PubChem database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2639,,beta12orEarlier,,,,,,,,,,,,data_2638,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an assay from the PubChem database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2639,PubChem ID,PubChem identifier,Identifier of an entry from the PubChem database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2639,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the PubChem database.,PubChem identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2641,Reaction ID (MACie),MACie entry number,Identifier of an enzyme reaction mechanism from the MACie database.,FALSE,,,http://edamontology.org/data_2108,,beta12orEarlier,,,,,,,,,,,,data_2641,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an enzyme reaction mechanism from the MACie database.,MACie entry number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,M[0-9]{4},,
http://edamontology.org/data_2642,Gene ID (miRBase),miRNA name|miRNA ID|miRNA identifier,Identifier for a gene from the miRBase database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2642,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for a gene from the miRBase database.,miRNA name|miRNA ID|miRNA identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,MI[0-9]{7},,
http://edamontology.org/data_2643,Gene ID (ZFIN),,Identifier for a gene from the Zebrafish information network genome (ZFIN) database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2643,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for a gene from the Zebrafish information network genome (ZFIN) database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,ZDB-GENE\-[0-9]+\-[0-9]+,,
http://edamontology.org/data_2644,Reaction ID (Rhea),,Identifier of an enzyme-catalysed reaction from the Rhea database.,FALSE,,,http://edamontology.org/data_2108,,beta12orEarlier,,,,,,,,,,,,data_2644,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an enzyme-catalysed reaction from the Rhea database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]{5},,
http://edamontology.org/data_2645,Pathway ID (Unipathway),upaid,Identifier of a biological pathway from the Unipathway database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_2645,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological pathway from the Unipathway database.,upaid,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,UPA[0-9]{5},,
http://edamontology.org/data_2646,Compound ID (ChEMBL),ChEMBL ID,Identifier of a small molecular from the ChEMBL database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2646,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a small molecular from the ChEMBL database.,ChEMBL ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2647,LGICdb identifier,,Unique identifier of an entry from the Ligand-gated ion channel (LGICdb) database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2647,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the Ligand-gated ion channel (LGICdb) database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9]+,,
http://edamontology.org/data_2648,Reaction kinetics ID (SABIO-RK),,Identifier of a biological reaction (kinetics entry) from the SABIO-RK reactions database.,FALSE,,,http://edamontology.org/data_2309,,beta12orEarlier,,,,,,,,,,,,data_2648,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a biological reaction (kinetics entry) from the SABIO-RK reactions database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2649,PharmGKB ID,,Identifier of an entry from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2649,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PA[0-9]+,,
http://edamontology.org/data_2650,Pathway ID (PharmGKB),,Identifier of a pathway from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,FALSE,,,http://edamontology.org/data_2365|http://edamontology.org/data_2649,,beta12orEarlier,,,,,,,,,,,,data_2650,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PA[0-9]+,,
http://edamontology.org/data_2651,Disease ID (PharmGKB),,Identifier of a disease from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,FALSE,,,http://edamontology.org/data_2649|http://edamontology.org/data_1150,,beta12orEarlier,,,,,,,,,,,,data_2651,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a disease from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PA[0-9]+,,
http://edamontology.org/data_2652,Drug ID (PharmGKB),,Identifier of a drug from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,FALSE,,,http://edamontology.org/data_2895|http://edamontology.org/data_2649,,beta12orEarlier,,,,,,,,,,,,data_2652,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a drug from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PA[0-9]+,,
http://edamontology.org/data_2653,Drug ID (TTD),,Identifier of a drug from the Therapeutic Target Database (TTD).,FALSE,,,http://edamontology.org/data_2895,,beta12orEarlier,,,,,,,,,,,,data_2653,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a drug from the Therapeutic Target Database (TTD).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,DAP[0-9]+,,
http://edamontology.org/data_2654,Target ID (TTD),,Identifier of a target protein from the Therapeutic Target Database (TTD).,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2654,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a target protein from the Therapeutic Target Database (TTD).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,TTDS[0-9]+,,
http://edamontology.org/data_2655,Cell type identifier,,A unique identifier of a type or group of cells.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2655,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a type or group of cells.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2656,NeuronDB ID,,A unique identifier of a neuron from the NeuronDB database.,FALSE,,,http://edamontology.org/data_2893,,beta12orEarlier,,,,,,,,,,,,data_2656,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a neuron from the NeuronDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2657,NeuroMorpho ID,,A unique identifier of a neuron from the NeuroMorpho database.,FALSE,,,http://edamontology.org/data_2893,,beta12orEarlier,,,,,,,,,,,,data_2657,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a neuron from the NeuroMorpho database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9]+,,
http://edamontology.org/data_2658,Compound ID (ChemIDplus),ChemIDplus ID,Identifier of a chemical from the ChemIDplus database.,FALSE,,,http://edamontology.org/data_2894,,beta12orEarlier,,,,,,,,,,,,data_2658,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a chemical from the ChemIDplus database.,ChemIDplus ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2659,Pathway ID (SMPDB),,Identifier of a pathway from the Small Molecule Pathway Database (SMPDB).,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_2659,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the Small Molecule Pathway Database (SMPDB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,SMP[0-9]{5},,
http://edamontology.org/data_2660,BioNumbers ID,,Identifier of an entry from the BioNumbers database of key numbers and associated data in molecular biology.,FALSE,,,http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2660,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the BioNumbers database of key numbers and associated data in molecular biology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2662,T3DB ID,,Unique identifier of a toxin from the Toxin and Toxin Target Database (T3DB) database.,FALSE,,,http://edamontology.org/data_2897,,beta12orEarlier,,,,,,,,,,,,data_2662,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a toxin from the Toxin and Toxin Target Database (T3DB) database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,T3D[0-9]+,,
http://edamontology.org/data_2663,Carbohydrate identifier,,Identifier of a carbohydrate.,FALSE,,,http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_2663,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a carbohydrate.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2664,GlycomeDB ID,,Identifier of an entry from the GlycomeDB database.,FALSE,,,http://edamontology.org/data_2900,,beta12orEarlier,,,,,,,,,,,,data_2664,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the GlycomeDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2665,LipidBank ID,,Identifier of an entry from the LipidBank database.,FALSE,,,http://edamontology.org/data_2905,,beta12orEarlier,,,,,,,,,,,,data_2665,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the LipidBank database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[a-zA-Z_0-9]+[0-9]+,,
http://edamontology.org/data_2666,CDD ID,,Identifier of a conserved domain from the Conserved Domain Database.,FALSE,,,http://edamontology.org/data_1038,,beta12orEarlier,,,,,,,,,,,,data_2666,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a conserved domain from the Conserved Domain Database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,cd[0-9]{5},,
http://edamontology.org/data_2667,MMDB ID,MMDB accession,An identifier of an entry from the MMDB database.,FALSE,,,http://edamontology.org/data_1070,,beta12orEarlier,,,,,,,,,,,,data_2667,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an entry from the MMDB database.,MMDB accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[0-9]{1,5}",,
http://edamontology.org/data_2668,iRefIndex ID,,Unique identifier of an entry from the iRefIndex database of protein-protein interactions.,FALSE,,,http://edamontology.org/data_1074,,beta12orEarlier,,,,,,,,,,,,data_2668,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the iRefIndex database of protein-protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2669,ModelDB ID,,Unique identifier of an entry from the ModelDB database.,FALSE,,,http://edamontology.org/data_2891,,beta12orEarlier,,,,,,,,,,,,data_2669,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of an entry from the ModelDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2670,Pathway ID (DQCS),,Identifier of a signaling pathway from the Database of Quantitative Cellular Signaling (DQCS).,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_2670,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a signaling pathway from the Database of Quantitative Cellular Signaling (DQCS).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2671,Ensembl ID (Homo sapiens),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database (Homo sapiens division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2671,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database (Homo sapiens division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENS([EGTP])[0-9]{11},,
http://edamontology.org/data_2672,Ensembl ID ('Bos taurus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Bos taurus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2672,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Bos taurus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSBTA([EGTP])[0-9]{11},,
http://edamontology.org/data_2673,Ensembl ID ('Canis familiaris'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Canis familiaris' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2673,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Canis familiaris' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSCAF([EGTP])[0-9]{11},,
http://edamontology.org/data_2674,Ensembl ID ('Cavia porcellus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Cavia porcellus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2674,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Cavia porcellus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSCPO([EGTP])[0-9]{11},,
http://edamontology.org/data_2675,Ensembl ID ('Ciona intestinalis'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona intestinalis' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2675,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona intestinalis' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSCIN([EGTP])[0-9]{11},,
http://edamontology.org/data_2676,Ensembl ID ('Ciona savignyi'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona savignyi' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2676,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona savignyi' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSCSAV([EGTP])[0-9]{11},,
http://edamontology.org/data_2677,Ensembl ID ('Danio rerio'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Danio rerio' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2677,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Danio rerio' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSDAR([EGTP])[0-9]{11},,
http://edamontology.org/data_2678,Ensembl ID ('Dasypus novemcinctus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Dasypus novemcinctus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2678,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Dasypus novemcinctus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSDNO([EGTP])[0-9]{11},,
http://edamontology.org/data_2679,Ensembl ID ('Echinops telfairi'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Echinops telfairi' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2679,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Echinops telfairi' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSETE([EGTP])[0-9]{11},,
http://edamontology.org/data_2680,Ensembl ID ('Erinaceus europaeus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Erinaceus europaeus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2680,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Erinaceus europaeus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSEEU([EGTP])[0-9]{11},,
http://edamontology.org/data_2681,Ensembl ID ('Felis catus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Felis catus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2681,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Felis catus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSFCA([EGTP])[0-9]{11},,
http://edamontology.org/data_2682,Ensembl ID ('Gallus gallus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gallus gallus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2682,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gallus gallus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSGAL([EGTP])[0-9]{11},,
http://edamontology.org/data_2683,Ensembl ID ('Gasterosteus aculeatus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gasterosteus aculeatus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2683,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gasterosteus aculeatus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSGAC([EGTP])[0-9]{11},,
http://edamontology.org/data_2684,Ensembl ID ('Homo sapiens'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Homo sapiens' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2684,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Homo sapiens' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSHUM([EGTP])[0-9]{11},,
http://edamontology.org/data_2685,Ensembl ID ('Loxodonta africana'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Loxodonta africana' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2685,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Loxodonta africana' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSLAF([EGTP])[0-9]{11},,
http://edamontology.org/data_2686,Ensembl ID ('Macaca mulatta'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Macaca mulatta' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2686,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Macaca mulatta' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSMMU([EGTP])[0-9]{11},,
http://edamontology.org/data_2687,Ensembl ID ('Monodelphis domestica'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Monodelphis domestica' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2687,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Monodelphis domestica' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSMOD([EGTP])[0-9]{11},,
http://edamontology.org/data_2688,Ensembl ID ('Mus musculus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Mus musculus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2688,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Mus musculus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSMUS([EGTP])[0-9]{11},,
http://edamontology.org/data_2689,Ensembl ID ('Myotis lucifugus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Myotis lucifugus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2689,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Myotis lucifugus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSMLU([EGTP])[0-9]{11},,
http://edamontology.org/data_2690,"Ensembl ID (""Ornithorhynchus anatinus\"")",,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ornithorhynchus anatinus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2690,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ornithorhynchus anatinus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSOAN([EGTP])[0-9]{11},,
http://edamontology.org/data_2691,Ensembl ID ('Oryctolagus cuniculus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryctolagus cuniculus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2691,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryctolagus cuniculus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSOCU([EGTP])[0-9]{11},,
http://edamontology.org/data_2692,Ensembl ID ('Oryzias latipes'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryzias latipes' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2692,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryzias latipes' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSORL([EGTP])[0-9]{11},,
http://edamontology.org/data_2693,Ensembl ID ('Otolemur garnettii'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Otolemur garnettii' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2693,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Otolemur garnettii' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSSAR([EGTP])[0-9]{11},,
http://edamontology.org/data_2694,Ensembl ID ('Pan troglodytes'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Pan troglodytes' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2694,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Pan troglodytes' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSPTR([EGTP])[0-9]{11},,
http://edamontology.org/data_2695,Ensembl ID ('Rattus norvegicus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Rattus norvegicus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2695,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Rattus norvegicus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSRNO([EGTP])[0-9]{11},,
http://edamontology.org/data_2696,Ensembl ID ('Spermophilus tridecemlineatus'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Spermophilus tridecemlineatus' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2696,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Spermophilus tridecemlineatus' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSSTO([EGTP])[0-9]{11},,
http://edamontology.org/data_2697,Ensembl ID ('Takifugu rubripes'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Takifugu rubripes' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2697,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Takifugu rubripes' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSFRU([EGTP])[0-9]{11},,
http://edamontology.org/data_2698,Ensembl ID ('Tupaia belangeri'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Tupaia belangeri' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2698,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Tupaia belangeri' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSTBE([EGTP])[0-9]{11},,
http://edamontology.org/data_2699,Ensembl ID ('Xenopus tropicalis'),,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Xenopus tropicalis' division).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2699,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2610,,,,,"Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Xenopus tropicalis' division).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,ENSXET([EGTP])[0-9]{11},,
http://edamontology.org/data_2700,CATH identifier,,Identifier of a protein domain (or other node) from the CATH database.,FALSE,,,http://edamontology.org/data_1038,,beta12orEarlier,,,,,,,,,,,,data_2700,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein domain (or other node) from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2701,CATH node ID (family),,A code number identifying a family from the CATH database.,FALSE,,,http://edamontology.org/data_1043,,beta12orEarlier,,,,2.10.10.10,,,,,,,,data_2701,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A code number identifying a family from the CATH database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2702,Enzyme ID (CAZy),CAZy ID,Identifier of an enzyme from the CAZy enzymes database.,FALSE,,,http://edamontology.org/data_2321,,beta12orEarlier,,,,,,,,,,,,data_2702,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an enzyme from the CAZy enzymes database.,CAZy ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2704,Clone ID (IMAGE),I.M.A.G.E. cloneID|IMAGE cloneID,A unique identifier assigned by the I.M.A.G.E. consortium to a clone (cloned molecular sequence).,FALSE,,,http://edamontology.org/data_1855,,beta12orEarlier,,,,,,,,,,,,data_2704,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier assigned by the I.M.A.G.E. consortium to a clone (cloned molecular sequence).,I.M.A.G.E. cloneID|IMAGE cloneID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2705,GO concept ID (cellular component),GO concept identifier (cellular compartment),An identifier of a 'cellular component' concept from the Gene Ontology.,FALSE,,,http://edamontology.org/data_1176,,beta12orEarlier,,,,,,,,,,,,data_2705,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a 'cellular component' concept from the Gene Ontology.,GO concept identifier (cellular compartment),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]{7}|GO:[0-9]{7},,
http://edamontology.org/data_2706,Chromosome name (BioCyc),,Name of a chromosome as used in the BioCyc database.,FALSE,,,http://edamontology.org/data_0987,,beta12orEarlier,,,,,,,,,,,,data_2706,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a chromosome as used in the BioCyc database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2709,CleanEx entry name,,An identifier of a gene expression profile from the CleanEx database.,FALSE,,,http://edamontology.org/data_1080,,beta12orEarlier,,,,,,,,,,,,data_2709,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a gene expression profile from the CleanEx database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2710,CleanEx dataset code,,An identifier of (typically a list of) gene expression experiments catalogued in the CleanEx database.,FALSE,,,http://edamontology.org/data_1078,,beta12orEarlier,,,,,,,,,,,,data_2710,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of (typically a list of) gene expression experiments catalogued in the CleanEx database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2711,Genome report,,An informative report of general information concerning a genome as a whole.,FALSE,,,http://edamontology.org/data_2530,,beta12orEarlier,,,,,,,,,,,,data_2711,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report of general information concerning a genome as a whole.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2713,Protein ID (CORUM),CORUM complex ID,Unique identifier for a protein complex from the CORUM database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2713,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a protein complex from the CORUM database.,CORUM complex ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2714,CDD PSSM-ID,,Unique identifier of a position-specific scoring matrix from the CDD database.,FALSE,,,http://edamontology.org/data_1115,,beta12orEarlier,,,,,,,,,,,,data_2714,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a position-specific scoring matrix from the CDD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2715,Protein ID (CuticleDB),CuticleDB ID,Unique identifier for a protein from the CuticleDB database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2715,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a protein from the CuticleDB database.,CuticleDB ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2716,DBD ID,,Identifier of a predicted transcription factor from the DBD database.,FALSE,,,http://edamontology.org/data_2911,,beta12orEarlier,,,,,,,,,,,,data_2716,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a predicted transcription factor from the DBD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2717,Oligonucleotide probe annotation,Oligonucleotide probe sets annotation,"General annotation on an oligonucleotide probe, or a set of probes.",FALSE,,,http://edamontology.org/data_3115,,beta12orEarlier,,,,,,,,,,,,data_2717,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"General annotation on an oligonucleotide probe, or a set of probes.",,Oligonucleotide probe sets annotation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2718,Oligonucleotide ID,,Identifier of an oligonucleotide from a database.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_2119,,beta12orEarlier,,,,,,,,,,,,data_2718,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an oligonucleotide from a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2719,dbProbe ID,,Identifier of an oligonucleotide probe from the dbProbe database.,FALSE,,,http://edamontology.org/data_2718,,beta12orEarlier,,,,,,,,,,,,data_2719,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an oligonucleotide probe from the dbProbe database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2720,Dinucleotide property,,Physicochemical property data for one or more dinucleotides.,FALSE,,,http://edamontology.org/data_2088,,beta12orEarlier,,,,,,,,,,,,data_2720,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Physicochemical property data for one or more dinucleotides.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2721,DiProDB ID,,Identifier of an dinucleotide property from the DiProDB database.,FALSE,,,http://edamontology.org/data_2718,,beta12orEarlier,,,,,,,,,,,,data_2721,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an dinucleotide property from the DiProDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2722,Protein features report (disordered structure),,disordered structure in a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2722,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,disordered structure in a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2723,Protein ID (DisProt),DisProt ID,Unique identifier for a protein from the DisProt database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2723,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a protein from the DisProt database.,DisProt ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2724,Embryo report,,Annotation on an embryo or concerning embryological development.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2724,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1713,,,,,Annotation on an embryo or concerning embryological development.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2725,Ensembl transcript ID,Transcript ID (Ensembl),Unique identifier for a gene transcript from the Ensembl database.,FALSE,,,http://edamontology.org/data_2610|http://edamontology.org/data_2769,,beta12orEarlier,,,,,,,,,,,,data_2725,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a gene transcript from the Ensembl database.,Transcript ID (Ensembl),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2726,Inhibitor annotation,,An informative report on one or more small molecules that are enzyme inhibitors.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2726,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0962,,,,,An informative report on one or more small molecules that are enzyme inhibitors.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2727,Promoter ID,,An identifier of a promoter of a gene that is catalogued in a database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2727,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:GeneAccessionList,An identifier of a promoter of a gene that is catalogued in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2728,EST accession,,Identifier of an EST sequence.,FALSE,,,http://edamontology.org/data_1855,,beta12orEarlier,,,,,,,,,,,,data_2728,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an EST sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2729,COGEME EST ID,,Identifier of an EST sequence from the COGEME database.,FALSE,,,http://edamontology.org/data_2728,,beta12orEarlier,,,,,,,,,,,,data_2729,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an EST sequence from the COGEME database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2730,COGEME unisequence ID,,Identifier of a unisequence from the COGEME database.|A unisequence is a single sequence assembled from ESTs.,FALSE,,,http://edamontology.org/data_2728,,beta12orEarlier,,,,,,,,,,,,data_2730,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a unisequence from the COGEME database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2731,Protein family ID (GeneFarm),GeneFarm family ID,Accession number of an entry (family) from the TIGRFam database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_2731,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry (family) from the TIGRFam database.,GeneFarm family ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2732,Family name,,The name of a family of organism.,FALSE,,,http://edamontology.org/data_1868,,beta12orEarlier,,,,,,,,,,,,data_2732,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a family of organism.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2733,Genus name (virus),,The name of a genus of viruses.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2733,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1870,,,,,The name of a genus of viruses.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2734,Family name (virus),,The name of a family of viruses.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2734,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2732,,,,,The name of a family of viruses.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2735,Database name (SwissRegulon),,The name of a SwissRegulon database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2735,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,The name of a SwissRegulon database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2736,Sequence feature ID (SwissRegulon),,"A feature identifier as used in the SwissRegulon database.|This can be name of a gene, the ID of a TFBS, or genomic coordinates in form ""chr:start..end"".",FALSE,,,http://edamontology.org/data_1015,,beta12orEarlier,,,,,,,,,,,,data_2736,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A feature identifier as used in the SwissRegulon database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2737,FIG ID,,"A unique identifier of gene in the NMPDR database.|A FIG ID consists of four parts: a prefix, genome id, locus type and id number.",FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2737,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene in the NMPDR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2738,Gene ID (Xenbase),,A unique identifier of gene in the Xenbase database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2738,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene in the Xenbase database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2739,Gene ID (Genolist),,A unique identifier of gene in the Genolist database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2739,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene in the Genolist database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2740,Gene name (Genolist),Genolist gene name,Name of an entry (gene) from the Genolist genes database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2740,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Name of an entry (gene) from the Genolist genes database.,Genolist gene name,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/data_2741,ABS ID,ABS identifier,Identifier of an entry (promoter) from the ABS database.,FALSE,,,http://edamontology.org/data_2727,,beta12orEarlier,,,,,,,,,,,,data_2741,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry (promoter) from the ABS database.,ABS identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2742,AraC-XylS ID,,Identifier of a transcription factor from the AraC-XylS database.,FALSE,,,http://edamontology.org/data_2911,,beta12orEarlier,,,,,,,,,,,,data_2742,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a transcription factor from the AraC-XylS database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2743,Gene name (HUGO),,Name of an entry (gene) from the HUGO database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2743,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1026,,,,,Name of an entry (gene) from the HUGO database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2744,Locus ID (PseudoCAP),,Identifier of a locus from the PseudoCAP database.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_2744,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a locus from the PseudoCAP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2745,Locus ID (UTR),,Identifier of a locus from the UTR database.,FALSE,,,http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_2745,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a locus from the UTR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2746,MonosaccharideDB ID,,Unique identifier of a monosaccharide from the MonosaccharideDB database.,FALSE,,,http://edamontology.org/data_2898,,beta12orEarlier,,,,,,,,,,,,data_2746,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of a monosaccharide from the MonosaccharideDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2747,Database name (CMD),,The name of a subdivision of the Collagen Mutation Database (CMD) database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2747,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,The name of a subdivision of the Collagen Mutation Database (CMD) database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2748,Database name (Osteogenesis),,The name of a subdivision of the Osteogenesis database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2748,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0957,,,,,The name of a subdivision of the Osteogenesis database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2749,Genome identifier,,An identifier of a particular genome.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2749,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a particular genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2751,GenomeReviews ID,,An identifier of a particular genome.,FALSE,,,http://edamontology.org/data_2903,,beta12orEarlier,,,,,,,,,,,,data_2751,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a particular genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2752,GlycoMap ID,,Identifier of an entry from the GlycosciencesDB database.,FALSE,,,http://edamontology.org/data_2900,,beta12orEarlier,,,,,,,,,,,,data_2752,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the GlycosciencesDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2753,Carbohydrate conformational map,,A conformational energy map of the glycosidic linkages in a carbohydrate molecule.,FALSE,,,http://edamontology.org/data_3425,,beta12orEarlier,,,,,,,,,,,,data_2753,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A conformational energy map of the glycosidic linkages in a carbohydrate molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2754,Gene features report (intron),,introns in a nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2754,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,introns in a nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2755,Transcription factor name,,The name of a transcription factor.,FALSE,,,http://edamontology.org/data_1009|http://edamontology.org/data_1077,,beta12orEarlier,,,,,,,,,,,,data_2755,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a transcription factor.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2756,TCID,,Identifier of a membrane transport proteins from the transport classification database (TCDB).,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2756,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a membrane transport proteins from the transport classification database (TCDB).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2757,Pfam domain name,,Name of a domain from the Pfam database.,FALSE,,,http://edamontology.org/data_1131,,beta12orEarlier,,,,,,,,,,,,data_2757,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a domain from the Pfam database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,PF[0-9]{5},,
http://edamontology.org/data_2758,Pfam clan ID,,Accession number of a Pfam clan.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_2758,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a Pfam clan.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,CL[0-9]{4},,
http://edamontology.org/data_2759,Gene ID (VectorBase),VectorBase ID,Identifier for a gene from the VectorBase database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2759,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for a gene from the VectorBase database.,VectorBase ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2761,UTRSite ID,,Identifier of an entry from the UTRSite database of regulatory motifs in eukaryotic UTRs.,FALSE,,,http://edamontology.org/data_1114,,beta12orEarlier,,,,,,,,,,,,data_2761,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the UTRSite database of regulatory motifs in eukaryotic UTRs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2762,Sequence signature report,Sequence profile report|Sequence motif report,"An informative report about a specific or conserved pattern in a molecular sequence, such as its context in genes or proteins, its role, origin or method of construction, etc.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2762,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report about a specific or conserved pattern in a molecular sequence, such as its context in genes or proteins, its role, origin or method of construction, etc.",Sequence profile report|Sequence motif report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2763,Locus annotation,Locus report,An informative report on a particular locus.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2763,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,An informative report on a particular locus.,Locus report,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2764,Protein name (UniProt),,Official name of a protein as used in the UniProt database.,FALSE,,,http://edamontology.org/data_1009,,beta12orEarlier,,,,,,,,,,,,data_2764,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Official name of a protein as used in the UniProt database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2765,Term ID list,,One or more terms from one or more controlled vocabularies which are annotations on an entity.|The concepts are typically provided as a persistent identifier or some other link the source ontologies. Evidence of the validity of the annotation might be included.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2765,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2872,,,,,One or more terms from one or more controlled vocabularies which are annotations on an entity.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2766,HAMAP ID,,Name of a protein family from the HAMAP database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_2766,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a protein family from the HAMAP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2767,Identifier with metadata,,"Basic information concerning an identifier of data (typically including the identifier itself).  For example, a gene symbol with information concerning its provenance.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2767,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"Basic information concerning an identifier of data (typically including the identifier itself).  For example, a gene symbol with information concerning its provenance.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/data_2768,Gene symbol annotation,,Annotation about a gene symbol.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2768,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,Annotation about a gene symbol.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2769,Transcript ID,,Identifier of a RNA transcript.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_2119,,beta12orEarlier,,,,,,,,,,,,data_2769,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a RNA transcript.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2770,HIT ID,,Identifier of an RNA transcript from the H-InvDB database.,FALSE,,,http://edamontology.org/data_2769,,beta12orEarlier,,,,,,,,,,,,data_2770,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an RNA transcript from the H-InvDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2771,HIX ID,,A unique identifier of gene cluster in the H-InvDB database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2771,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene cluster in the H-InvDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2772,HPA antibody id,,Identifier of a antibody from the HPA database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2772,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a antibody from the HPA database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2773,IMGT/HLA ID,,Identifier of a human major histocompatibility complex (HLA) or other protein from the IMGT/HLA database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2773,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a human major histocompatibility complex (HLA) or other protein from the IMGT/HLA database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2774,Gene ID (JCVI),,A unique identifier of gene assigned by the J. Craig Venter Institute (JCVI).,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2774,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene assigned by the J. Craig Venter Institute (JCVI).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2775,Kinase name,,The name of a kinase protein.,FALSE,,,http://edamontology.org/data_1009,,beta12orEarlier,,,,,,,,,,,,data_2775,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a kinase protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2776,ConsensusPathDB entity ID,,Identifier of a physical entity from the ConsensusPathDB database.,FALSE,,,http://edamontology.org/data_2917|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2776,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a physical entity from the ConsensusPathDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2777,ConsensusPathDB entity name,,Name of a physical entity from the ConsensusPathDB database.,FALSE,,,http://edamontology.org/data_2917|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2777,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a physical entity from the ConsensusPathDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2778,CCAP strain number,,The number of a strain of algae and protozoa from the CCAP database.,FALSE,,,http://edamontology.org/data_2912,,beta12orEarlier,,,,,,,,,,,,data_2778,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The number of a strain of algae and protozoa from the CCAP database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2779,Stock number,,An identifier of stock from a catalogue of biological resources.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2779,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of stock from a catalogue of biological resources.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2780,Stock number (TAIR),,A stock number from The Arabidopsis information resource (TAIR).,FALSE,,,http://edamontology.org/data_2779,,beta12orEarlier,,,,,,,,,,,,data_2780,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A stock number from The Arabidopsis information resource (TAIR).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2781,REDIdb ID,,Identifier of an entry from the RNA editing database (REDIdb).,FALSE,,,http://edamontology.org/data_1097,,beta12orEarlier,,,,,,,,,,,,data_2781,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the RNA editing database (REDIdb).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2782,SMART domain name,,Name of a domain from the SMART database.,FALSE,,,http://edamontology.org/data_1131,,beta12orEarlier,,,,,,,,,,,,data_2782,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a domain from the SMART database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2783,Protein family ID (PANTHER),Panther family ID,Accession number of an entry (family) from the PANTHER database.,FALSE,,,http://edamontology.org/data_2910,,beta12orEarlier,,,,,,,,,,,,data_2783,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry (family) from the PANTHER database.,Panther family ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2784,RNAVirusDB ID,,A unique identifier for a virus from the RNAVirusDB database.|Could list (or reference) other taxa here from https://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary.,FALSE,,,http://edamontology.org/data_2785,,beta12orEarlier,,,,,,,,,,,,data_2784,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier for a virus from the RNAVirusDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2785,Virus ID,,An accession of annotation on a (group of) viruses (catalogued in a database).,FALSE,,,http://edamontology.org/data_2908|http://edamontology.org/data_2913,,beta12orEarlier,,,,,,,,,,,,data_2785,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession of annotation on a (group of) viruses (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2786,NCBI Genome Project ID,,An identifier of a genome project assigned by NCBI.,FALSE,,,http://edamontology.org/data_2903,,beta12orEarlier,,,,,,,,,,,,data_2786,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a genome project assigned by NCBI.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2787,NCBI genome accession,,A unique identifier of a whole genome assigned by the NCBI.,FALSE,,,http://edamontology.org/data_2903,,beta12orEarlier,,,,,,,,,,,,data_2787,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a whole genome assigned by the NCBI.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2788,Sequence profile data,,"Data concerning, extracted from, or derived from the analysis of a sequence profile, such as its name, length, technical details about the profile or it's construction, the biological role or annotation, and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2788,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning, extracted from, or derived from the analysis of a sequence profile, such as its name, length, technical details about the profile or it's construction, the biological role or annotation, and so on.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0860,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2789,Protein ID (TopDB),TopDB ID,Unique identifier for a membrane protein from the TopDB database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2789,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a membrane protein from the TopDB database.,TopDB ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2790,Gel ID,Gel identifier,Identifier of a two-dimensional (protein) gel.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2790,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a two-dimensional (protein) gel.,Gel identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2791,Reference map name (SWISS-2DPAGE),,Name of a reference map gel from the SWISS-2DPAGE database.,FALSE,,,http://edamontology.org/data_2790|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2791,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a reference map gel from the SWISS-2DPAGE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2792,Protein ID (PeroxiBase),PeroxiBase ID,Unique identifier for a peroxidase protein from the PeroxiBase database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2792,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a peroxidase protein from the PeroxiBase database.,PeroxiBase ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2793,SISYPHUS ID,,Identifier of an entry from the SISYPHUS database of tertiary structure alignments.,FALSE,,,http://edamontology.org/data_1072,,beta12orEarlier,,,,,,,,,,,,data_2793,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the SISYPHUS database of tertiary structure alignments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2794,ORF ID,,Accession of an open reading frame (catalogued in a database).,FALSE,,,http://edamontology.org/data_2795|http://edamontology.org/data_1893,,beta12orEarlier,,,,,,,,,,,,data_2794,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of an open reading frame (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2795,ORF identifier,,An identifier of an open reading frame.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_2795,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an open reading frame.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2796,Linucs ID,,Identifier of an entry from the GlycosciencesDB database.,FALSE,,,http://edamontology.org/data_2900,,beta12orEarlier,,,,,,,,,,,,data_2796,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from the GlycosciencesDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2797,Protein ID (LGICdb),LGICdb ID,Unique identifier for a ligand-gated ion channel protein from the LGICdb database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2797,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a ligand-gated ion channel protein from the LGICdb database.,LGICdb ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2798,MaizeDB ID,,Identifier of an EST sequence from the MaizeDB database.,FALSE,,,http://edamontology.org/data_2728,,beta12orEarlier,,,,,,,,,,,,data_2798,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an EST sequence from the MaizeDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2799,Gene ID (MfunGD),,A unique identifier of gene in the MfunGD database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2799,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of gene in the MfunGD database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2800,Orpha number,,An identifier of a disease from the Orpha database.,FALSE,,,http://edamontology.org/data_1150,,beta12orEarlier,,,,,,,,,,,,data_2800,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a disease from the Orpha database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2802,Protein ID (EcID),,Unique identifier for a protein from the EcID database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2802,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a protein from the EcID database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2803,Clone ID (RefSeq),,A unique identifier of a cDNA molecule catalogued in the RefSeq database.,FALSE,,,http://edamontology.org/data_1855|http://edamontology.org/data_1098,,beta12orEarlier,,,,,,,,,,,,data_2803,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier of a cDNA molecule catalogued in the RefSeq database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2804,Protein ID (ConoServer),,Unique identifier for a cone snail toxin protein from the ConoServer database.,FALSE,,,http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2804,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a cone snail toxin protein from the ConoServer database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2805,GeneSNP ID,,Identifier of a GeneSNP database entry.,FALSE,,,http://edamontology.org/data_2294,,beta12orEarlier,,,,,,,,,,,,data_2805,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a GeneSNP database entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2812,Lipid identifier,,Identifier of a lipid.,FALSE,,,http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_2812,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a lipid.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2831,Databank,,A flat-file (textual) data archive.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2831,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A flat-file (textual) data archive.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0957,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2832,Web portal,,A web site providing data (web pages) on a common theme to a HTTP client.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2832,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A web site providing data (web pages) on a common theme to a HTTP client.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0958,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2835,Gene ID (VBASE2),VBASE2 ID,Identifier for a gene from the VBASE2 database.,FALSE,,,http://edamontology.org/data_2295,,beta12orEarlier,,,,,,,,,,,,data_2835,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for a gene from the VBASE2 database.,VBASE2 ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2836,DPVweb ID,DPVweb virus ID,A unique identifier for a virus from the DPVweb database.,FALSE,,,http://edamontology.org/data_2785,,beta12orEarlier,,,,,,,,,,,,data_2836,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A unique identifier for a virus from the DPVweb database.,DPVweb virus ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2837,Pathway ID (BioSystems),,Identifier of a pathway from the BioSystems pathway database.,FALSE,,,http://edamontology.org/data_2365,,beta12orEarlier,,,,,,,,,,,,data_2837,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a pathway from the BioSystems pathway database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[0-9]+,,
http://edamontology.org/data_2838,Experimental data (proteomics),,Data concerning a proteomics experiment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2838,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2531,,,,,Data concerning a proteomics experiment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2849,Abstract,,An abstract of a scientific article.,FALSE,,,http://edamontology.org/data_2526,,beta12orEarlier,,,,,,,,,,,,data_2849,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An abstract of a scientific article.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2850,Lipid structure,,3D coordinate and associated data for a lipid structure.,FALSE,,,http://edamontology.org/data_0883,,beta12orEarlier,,,,,,,,,,,,data_2850,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a lipid structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2851,Drug structure,,3D coordinate and associated data for the (3D) structure of a drug.,FALSE,,,http://edamontology.org/data_1463,,beta12orEarlier,,,,,,,,,,,,data_2851,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for the (3D) structure of a drug.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2852,Toxin structure,,3D coordinate and associated data for the (3D) structure of a toxin.,FALSE,,,http://edamontology.org/data_1463,,beta12orEarlier,,,,,,,,,,,,data_2852,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for the (3D) structure of a toxin.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2854,Position-specific scoring matrix,PSSM,"A simple matrix of numbers, where each value (or column of values) is derived derived from analysis of the corresponding position in a sequence alignment.",FALSE,,,http://edamontology.org/data_2082|http://edamontology.org/data_1354,,beta12orEarlier,,,,,,,,,,,,data_2854,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A simple matrix of numbers, where each value (or column of values) is derived derived from analysis of the corresponding position in a sequence alignment.",PSSM,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2855,Distance matrix,,"A matrix of distances between molecular entities, where a value (distance) is (typically) derived from comparison of two entities and reflects their similarity.",FALSE,,,http://edamontology.org/data_2082,,beta12orEarlier,,,,,,,,,,,,data_2855,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A matrix of distances between molecular entities, where a value (distance) is (typically) derived from comparison of two entities and reflects their similarity.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2856,Structural distance matrix,,Distances (values representing similarity) between a group of molecular structures.,FALSE,,,http://edamontology.org/data_2855,,beta12orEarlier,,,,,,,,,,,,data_2856,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Distances (values representing similarity) between a group of molecular structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2857,Article metadata,,Bibliographic data concerning scientific article(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2857,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2526,,,,,Bibliographic data concerning scientific article(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2858,Ontology concept,,"A concept from a biological ontology.|This includes any fields from the concept definition such as concept name, definition, comments and so on.",FALSE,,,http://edamontology.org/data_2353,,beta12orEarlier,,,,,,,,,,,,data_2858,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A concept from a biological ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2865,Codon usage bias,,A numerical measure of differences in the frequency of occurrence of synonymous codons in DNA sequences.,FALSE,,,http://edamontology.org/data_0914,,beta12orEarlier,,,,,,,,,,,,data_2865,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A numerical measure of differences in the frequency of occurrence of synonymous codons in DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2866,Northern blot report,,Northern Blot experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2866,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Northern Blot experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2867,Nucleic acid features report (VNTR),,variable number of tandem repeat (VNTR) polymorphism in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2867,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,variable number of tandem repeat (VNTR) polymorphism in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2868,Nucleic acid features report (microsatellite),,microsatellite polymorphism in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2868,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2868,,,,microsatellite polymorphism in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2869,Nucleic acid features report (RFLP),,restriction fragment length polymorphisms (RFLP) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2869,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,restriction fragment length polymorphisms (RFLP) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2870,Radiation hybrid map,RH map,A map showing distance between genetic markers estimated by radiation-induced breaks in a chromosome.|The radiation method can break very closely linked markers providing a more detailed map.  Most genetic markers and subsequences may be located to a defined map position and with a more precise estimates of distance than a linkage map.,FALSE,,,http://edamontology.org/data_1280,,beta12orEarlier,,,,,,,,,,,,data_2870,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A map showing distance between genetic markers estimated by radiation-induced breaks in a chromosome.,RH map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2872,ID list,,"A simple list of data identifiers (such as database accessions), possibly with additional basic information on the addressed data.",FALSE,,,http://edamontology.org/data_2093,,beta12orEarlier,,,,,,,,,,,,data_2872,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A simple list of data identifiers (such as database accessions), possibly with additional basic information on the addressed data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2873,Phylogenetic gene frequencies data,,Gene frequencies data that may be read during phylogenetic tree calculation.,FALSE,,,http://edamontology.org/data_1426,,beta12orEarlier,,,,,,,,,,,,data_2873,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Gene frequencies data that may be read during phylogenetic tree calculation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2874,Sequence set (polymorphic),,"A set of sub-sequences displaying some type of polymorphism, typically indicating the sequence in which they occur, their position and other metadata.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2874,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1234,,,,,"A set of sub-sequences displaying some type of polymorphism, typically indicating the sequence in which they occur, their position and other metadata.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2875,DRCAT resource,,An entry (resource) from the DRCAT bioinformatics resource catalogue.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2875,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1883,,,,,An entry (resource) from the DRCAT bioinformatics resource catalogue.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2877,Protein complex,,"3D coordinate and associated data for a multi-protein complex; two or more polypeptides chains in a stable, functional association with one another.",FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_2877,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"3D coordinate and associated data for a multi-protein complex; two or more polypeptides chains in a stable, functional association with one another.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2878,Protein structural motif,,3D coordinate and associated data for a protein (3D) structural motif; any group of contiguous or non-contiguous amino acid residues but typically those forming a feature with a structural or functional role.,FALSE,,,http://edamontology.org/data_1460,,beta12orEarlier,,,,,,,,,,,,data_2878,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3D coordinate and associated data for a protein (3D) structural motif; any group of contiguous or non-contiguous amino acid residues but typically those forming a feature with a structural or functional role.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2879,Lipid report,,Annotation on or information derived from one or more specific lipid 3D structure(s).,FALSE,,,http://edamontology.org/data_2085,,beta12orEarlier,,,,,,,,,,,,data_2879,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotation on or information derived from one or more specific lipid 3D structure(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2880,Secondary structure image,,Image of one or more molecular secondary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2880,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2992,,,,,Image of one or more molecular secondary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/data_2881,Secondary structure report,,"An informative report on general information, properties or features of one or more molecular secondary structures.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2881,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2085,,,,,"An informative report on general information, properties or features of one or more molecular secondary structures.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2882,DNA features,,DNA sequence-specific feature annotation (not in a feature table).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2882,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1276,,,,,DNA sequence-specific feature annotation (not in a feature table).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_2883,RNA features report,,Features concerning RNA or regions of DNA that encode an RNA molecule.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2883,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,Features concerning RNA or regions of DNA that encode an RNA molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2884,Plot,,Biological data that has been plotted as a graph of some type.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2884,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Biological data that has been plotted as a graph of some type.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2885,Nucleic acid features report (polymorphism),,DNA polymorphism.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2885,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA polymorphism.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2886,Protein sequence record,Sequence record (protein),A protein sequence and associated metadata.,FALSE,,,http://edamontology.org/data_0849|http://edamontology.org/data_2976,,beta12orEarlier,,,,,,,,,,,,data_2886,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A protein sequence and associated metadata.,Sequence record (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2887,Nucleic acid sequence record,Sequence record (nucleic acid)|Nucleotide sequence record|DNA sequence record|RNA sequence record,A nucleic acid sequence and associated metadata.,FALSE,,,http://edamontology.org/data_2977|http://edamontology.org/data_0849,,beta12orEarlier,,,,,,,,,,,,data_2887,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A nucleic acid sequence and associated metadata.,Sequence record (nucleic acid)|Nucleotide sequence record,DNA sequence record|RNA sequence record,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2888,Protein sequence record (full),,"A protein sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2888,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A protein sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2889,Nucleic acid sequence record (full) ,,"A nucleic acid sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2889,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A nucleic acid sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0849,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2891,Biological model accession,,"Accession of a mathematical model, typically an entry from a database.",FALSE,,,http://edamontology.org/data_1085|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2891,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Accession of a mathematical model, typically an entry from a database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2892,Cell type name,,The name of a type or group of cells.,FALSE,,,http://edamontology.org/data_2655|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2892,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of a type or group of cells.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2893,Cell type accession,Cell type ID,Accession of a type or group of cells (catalogued in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2655,,beta12orEarlier,,,,,,,,,,,,data_2893,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a type or group of cells (catalogued in a database).,Cell type ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2894,Compound accession,Chemical compound accession|Small molecule accession,Accession of an entry from a database of chemicals.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_1086,,beta12orEarlier,,,,,,,,,,,,data_2894,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of an entry from a database of chemicals.,Chemical compound accession|Small molecule accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2895,Drug accession,,Accession of a drug.,FALSE,,,http://edamontology.org/data_0993|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2895,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a drug.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2896,Toxin name,,Name of a toxin.,FALSE,,,http://edamontology.org/data_2099|http://edamontology.org/data_2576,,beta12orEarlier,,,,,,,,,,,,data_2896,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a toxin.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2897,Toxin accession,,Accession of a toxin (catalogued in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2576,,beta12orEarlier,,,,,,,,,,,,data_2897,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a toxin (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2898,Monosaccharide accession,,Accession of a monosaccharide (catalogued in a database).,FALSE,,,http://edamontology.org/data_0996|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2898,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a monosaccharide (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2899,Drug name,,Common name of a drug.,FALSE,,,http://edamontology.org/data_0990|http://edamontology.org/data_0993,,beta12orEarlier,,,,,,,,,,,,data_2899,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Common name of a drug.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2900,Carbohydrate accession,,Accession of an entry from a database of carbohydrates.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_2663,,beta12orEarlier,,,,,,,,,,,,data_2900,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of an entry from a database of carbohydrates.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2901,Molecule accession,,Accession of a specific molecule (catalogued in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_0982,,beta12orEarlier,,,,,,,,,,,,data_2901,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a specific molecule (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2902,Data resource definition accession,,Accession of a data definition (catalogued in a database).,FALSE,,,http://edamontology.org/data_1084|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2902,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a data definition (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2903,Genome accession,,An accession of a particular genome (in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2749,,beta12orEarlier,,,,,,,,,,,,data_2903,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession of a particular genome (in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2904,Map accession,,An accession of a map of a molecular sequence (deposited in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2117,,beta12orEarlier,,,,,,,,,,,,data_2904,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession of a map of a molecular sequence (deposited in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2905,Lipid accession,,Accession of an entry from a database of lipids.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_2812,,beta12orEarlier,,,,,,,,,,,,data_2905,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of an entry from a database of lipids.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2906,Peptide ID,,Accession of a peptide deposited in a database.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_0988,,beta12orEarlier,,,,,,,,,,,,data_2906,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a peptide deposited in a database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2907,Protein accession,Protein accessions,Accession of a protein deposited in a database.,FALSE,,,http://edamontology.org/data_2901|http://edamontology.org/data_0989,,beta12orEarlier,,,,,,,,,,,,data_2907,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a protein deposited in a database.,Protein accessions,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2908,Organism accession,,An accession of annotation on a (group of) organisms (catalogued in a database).,FALSE,,,http://edamontology.org/data_1869|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_2908,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession of annotation on a (group of) organisms (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2909,Organism name,,The name of an organism (or group of organisms).,FALSE,,,http://edamontology.org/data_1869|http://edamontology.org/data_2099,,beta12orEarlier,,,,,,,,,,,,data_2909,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Moby:Organism_Name|Moby:OrganismsLongName|Moby:FirstEpithet|Moby:BriefOccurrenceRecord|Moby:InfraspecificEpithet|Moby:OccurrenceRecord|Moby:OrganismsShortName,The name of an organism (or group of organisms).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2910,Protein family accession,,Accession of a protein family (that is deposited in a database).,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_1075,,beta12orEarlier,,,,,,,,,,,,data_2910,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of a protein family (that is deposited in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2911,Transcription factor accession,,Accession of an entry from a database of transcription factors or binding sites.,FALSE,,,http://edamontology.org/data_1077|http://edamontology.org/data_2091|http://edamontology.org/data_2907,,beta12orEarlier,,,,,,,,,,,,data_2911,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession of an entry from a database of transcription factors or binding sites.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2912,Strain accession,,"Identifier of a strain of an organism variant, typically a plant, virus or bacterium.",FALSE,,,http://edamontology.org/data_2908|http://edamontology.org/data_2379,,beta12orEarlier,,,,,,,,,,,,data_2912,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identifier of a strain of an organism variant, typically a plant, virus or bacterium.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2913,Virus identifier,,An accession of annotation on a (group of) viruses (catalogued in a database).,FALSE,,,http://edamontology.org/data_1869,,beta12orEarlier,,,,,,,,,,,,data_2913,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An accession of annotation on a (group of) viruses (catalogued in a database).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2914,Sequence features metadata,,Metadata on sequence features.,FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Metadata on sequence features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2915,Gramene identifier,,Identifier of a Gramene database entry.,FALSE,,,http://edamontology.org/data_1096,,beta12orEarlier,,,,,,,,,,,,data_2915,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a Gramene database entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2916,DDBJ accession,DDBJ identifier|DDBJ accession number|DDBJ ID,An identifier of an entry from the DDBJ sequence database.,FALSE,,,http://edamontology.org/data_1103,,beta12orEarlier,,,,,,,,,,,,data_2916,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an entry from the DDBJ sequence database.,DDBJ identifier|DDBJ accession number|DDBJ ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2917,ConsensusPathDB identifier,,An identifier of an entity from the ConsensusPathDB database.,FALSE,,,http://edamontology.org/data_2109,,beta12orEarlier,,,,,,,,,,,,data_2917,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of an entity from the ConsensusPathDB database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2925,Sequence data,,"Data concerning, extracted from, or derived from the analysis of molecular sequence(s). |This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2925,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2534,,,,,"Data concerning, extracted from, or derived from the analysis of molecular sequence(s). ",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2927,Codon usage,,"Data concerning codon usage.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2927,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0914,,,,,Data concerning codon usage.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2954,Article report,,Data derived from the analysis of a scientific text such as a full text article from a scientific journal.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2954,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0972|http://edamontology.org/data_3779,,,,,Data derived from the analysis of a scientific text such as a full text article from a scientific journal.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2955,Sequence report,Sequence-derived report,"An informative report of information about molecular sequence(s), including basic information (metadata), and reports generated from molecular sequence analysis, including positional features and non-positional properties.",FALSE,,,http://edamontology.org/data_2048,,beta12orEarlier,,,,,,,,,,,,data_2955,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report of information about molecular sequence(s), including basic information (metadata), and reports generated from molecular sequence analysis, including positional features and non-positional properties.",Sequence-derived report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2956,Protein secondary structure report,,An informative report about the properties or features of one or more protein secondary structures.,FALSE,,,http://edamontology.org/data_1537,,beta12orEarlier,,,,,,,,,,,,data_2956,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report about the properties or features of one or more protein secondary structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2957,Hopp and Woods plot,,A Hopp and Woods plot of predicted antigenicity of a peptide or protein.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_1534,,beta12orEarlier,,,,,,,,,,,,data_2957,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A Hopp and Woods plot of predicted antigenicity of a peptide or protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2958,Nucleic acid melting curve,,A melting curve of a double-stranded nucleic acid molecule (DNA or DNA/RNA).|Shows the proportion of nucleic acid which are double-stranded versus temperature.,FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_1583,,beta12orEarlier,,,,,,,,,,,,data_2958,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A melting curve of a double-stranded nucleic acid molecule (DNA or DNA/RNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2959,Nucleic acid probability profile,,A probability profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA).|Shows the probability of a base pair not being melted (i.e. remaining as double-stranded DNA) at a specified temperature,FALSE,,,http://edamontology.org/data_1583,,beta12orEarlier,,,,,,,,,,,,data_2959,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A probability profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2960,Nucleic acid temperature profile,Melting map,A temperature profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA).|Plots melting temperature versus base position.,FALSE,,,http://edamontology.org/data_1583,,beta12orEarlier,,,,,,,,,,,,data_2960,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A temperature profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA).,Melting map,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2961,Gene regulatory network report,,A report typically including a map (diagram) of a gene regulatory network.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2961,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report typically including a map (diagram) of a gene regulatory network.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2984,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2965,2D PAGE gel report,,An informative report on a two-dimensional (2D PAGE) gel.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2965,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report on a two-dimensional (2D PAGE) gel.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2966,Oligonucleotide probe sets annotation,,"General annotation on a set of oligonucleotide probes, such as the gene name with which the probe set is associated and which probes belong to the set.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2966,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"General annotation on a set of oligonucleotide probes, such as the gene name with which the probe set is associated and which probes belong to the set.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2717,,,,,,,,,,,,,1.14,,,,,,,
http://edamontology.org/data_2967,Microarray image,,An image from a microarray experiment which (typically) allows a visualisation of probe hybridisation and gene-expression data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2967,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2968,,,,,An image from a microarray experiment which (typically) allows a visualisation of probe hybridisation and gene-expression data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2968,Image,Image data,"Biological or biomedical data has been rendered into an image, typically for display on screen.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2968,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Biological or biomedical data has been rendered into an image, typically for display on screen.",Image data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2969,Sequence image,,"Image of a molecular sequence, possibly with sequence features or properties shown.",FALSE,,,http://edamontology.org/data_2968|http://edamontology.org/data_2955,,beta12orEarlier,,,,,,,,,,,,data_2969,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Image of a molecular sequence, possibly with sequence features or properties shown.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2970,Protein hydropathy data,Protein hydropathy report,A report on protein properties concerning hydropathy.,FALSE,,,http://edamontology.org/data_0897,,beta12orEarlier,,,,,,,,,,,,data_2970,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on protein properties concerning hydropathy.,Protein hydropathy report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2971,Workflow data,,Data concerning a computational workflow.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2971,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0949,,,,,Data concerning a computational workflow.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2972,Workflow,,A computational workflow.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2972,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0949,,,,,A computational workflow.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2973,Secondary structure data,,Data concerning molecular secondary structure data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2973,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2085,,,,,Data concerning molecular secondary structure data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2974,Protein sequence (raw),Raw sequence (protein)|Raw protein sequence,A raw protein sequence (string of characters).,FALSE,,,http://edamontology.org/data_0848|http://edamontology.org/data_2976,,beta12orEarlier,,,,,,,,,,,,data_2974,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A raw protein sequence (string of characters).,Raw sequence (protein)|Raw protein sequence,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2975,Nucleic acid sequence (raw),Nucleotide sequence (raw)|Raw sequence (nucleic acid)|Nucleic acid raw sequence,A raw nucleic acid sequence.,FALSE,,,http://edamontology.org/data_2977|http://edamontology.org/data_0848,,beta12orEarlier,,,,,,,,,,,,data_2975,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A raw nucleic acid sequence.,Nucleotide sequence (raw)|Raw sequence (nucleic acid)|Nucleic acid raw sequence,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2976,Protein sequence,Protein sequences,"One or more protein sequences, possibly with associated annotation.",FALSE,,,http://edamontology.org/data_2044,,beta12orEarlier,,,,,,,,,,,,data_2976,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"One or more protein sequences, possibly with associated annotation.",Protein sequences,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2977,Nucleic acid sequence,Nucleic acid sequences|Nucleotide sequences|Nucleotide sequence|DNA sequence,"One or more nucleic acid sequences, possibly with associated annotation.",FALSE,,,http://edamontology.org/data_2044,,beta12orEarlier,,,,,,,,,,,,data_2977,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"One or more nucleic acid sequences, possibly with associated annotation.",Nucleic acid sequences|Nucleotide sequences|Nucleotide sequence,DNA sequence,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2978,Reaction data,Reaction annotation|Enzyme kinetics annotation,"Data concerning a biochemical reaction, typically data and more general annotation on the kinetics of enzyme-catalysed reaction.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_2978,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning a biochemical reaction, typically data and more general annotation on the kinetics of enzyme-catalysed reaction.",Reaction annotation|Enzyme kinetics annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2979,Peptide property,Peptide data,Data concerning small peptides.,FALSE,,,http://edamontology.org/data_2087,,beta12orEarlier,,,,,,,,,,,,data_2979,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning small peptides.,Peptide data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2980,Protein classification,,"An informative report concerning the classification of protein sequences or structures.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2980,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0907,,,,,An informative report concerning the classification of protein sequences or structures.,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2981,Sequence motif data,,"Data concerning specific or conserved pattern in molecular sequences.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2981,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning specific or conserved pattern in molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0860,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2982,Sequence profile data,,"Data concerning models representing a (typically multiple) sequence alignment.|This is a broad data type and is used a placeholder for other, more specific types.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2982,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1354,,,,,Data concerning models representing a (typically multiple) sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2983,Pathway or network data,,Data concerning a specific biological pathway or network.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2983,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2984|http://edamontology.org/data_2600,,,,,Data concerning a specific biological pathway or network.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/data_2984,Pathway or network report,,"An informative report concerning or derived from the analysis of a biological pathway or network, such as a map (diagram) or annotation.",FALSE,,,http://edamontology.org/data_3753,,beta12orEarlier,,,,,,,,,,,,data_2984,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report concerning or derived from the analysis of a biological pathway or network, such as a map (diagram) or annotation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2985,Nucleic acid thermodynamic data,Nucleic acid property (thermodynamic or kinetic)|Nucleic acid thermodynamic property,A thermodynamic or kinetic property of a nucleic acid molecule.,FALSE,,,http://edamontology.org/data_0912,,beta12orEarlier,,,,,,,,,,,,data_2985,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A thermodynamic or kinetic property of a nucleic acid molecule.,Nucleic acid property (thermodynamic or kinetic)|Nucleic acid thermodynamic property,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2986,Nucleic acid classification,,"Data concerning the classification of nucleic acid sequences or structures.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2986,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3148,,,,,Data concerning the classification of nucleic acid sequences or structures.,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2987,Classification report,,"A report on a classification of molecular sequences, structures or other entities.|This can include an entire classification, components such as classifiers, assignments of entities to a classification and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2987,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2048,,,,,"A report on a classification of molecular sequences, structures or other entities.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_2989,Protein features report (key folding sites),,key residues involved in protein folding.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_2989,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,key residues involved in protein folding.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_2991,Protein geometry report,Torsion angle data,"Geometry data for a protein structure, for example bond lengths, bond angles, torsion angles, chiralities, planaraties etc.",FALSE,,,http://edamontology.org/data_1537,,beta12orEarlier,,,,,,,,,,,,data_2991,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Geometry data for a protein structure, for example bond lengths, bond angles, torsion angles, chiralities, planaraties etc.",Torsion angle data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2992,Protein structure image,Structure image (protein),An image of protein structure.,FALSE,,,http://edamontology.org/data_1710|http://edamontology.org/data_3153,,beta12orEarlier,,,,,,,,,,,,data_2992,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image of protein structure.,Structure image (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_2994,Phylogenetic character weights,,Weights for sequence positions or characters in phylogenetic analysis where zero is defined as unweighted.,FALSE,,,http://edamontology.org/data_2523,,beta12orEarlier,,,,,,,,,,,,data_2994,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Weights for sequence positions or characters in phylogenetic analysis where zero is defined as unweighted.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3002,Annotation track,Genome-browser track|Genome annotation track|Genomic track|Genome track|Sequence annotation track,"Annotation of one particular positional feature on a biomolecular (typically genome) sequence, suitable for import and display in a genome browser.",FALSE,,,http://edamontology.org/data_1255,,beta12orEarlier,,,,,,,,,,,,data_3002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation of one particular positional feature on a biomolecular (typically genome) sequence, suitable for import and display in a genome browser.",Genome-browser track|Genome annotation track|Genomic track|Genome track|Sequence annotation track,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3021,UniProt accession,UniProtKB accession|UniProt entry accession|UniProt accession number|UniProtKB accession number|TrEMBL entry accession|Swiss-Prot entry accession,Accession number of a UniProt (protein sequence) database entry.,FALSE,,,http://edamontology.org/data_1096,,beta12orEarlier,,,,P43353|Q7M1G0|Q9C199|A5A6J6,,,,,,,,data_3021,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of a UniProt (protein sequence) database entry.,UniProtKB accession|UniProt entry accession|UniProt accession number|UniProtKB accession number,TrEMBL entry accession|Swiss-Prot entry accession,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,"[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}",,
http://edamontology.org/data_3022,NCBI genetic code ID,,Identifier of a genetic code in the NCBI list of genetic codes.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,16,,,,,,,,data_3022,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a genetic code in the NCBI list of genetic codes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,[1-9][0-9]?,,
http://edamontology.org/data_3025,Ontology concept identifier,,Identifier of a concept in an ontology of biological or bioinformatics concepts and relations.,FALSE,,,http://edamontology.org/data_0976,,beta12orEarlier,,,,,,,,,,,,data_3025,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a concept in an ontology of biological or bioinformatics concepts and relations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3026,GO concept name (biological process),,The name of a concept for a biological process from the GO ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_3026,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2339,,,,,The name of a concept for a biological process from the GO ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_3027,GO concept name (molecular function),,The name of a concept for a molecular function from the GO ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_3027,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2339,,,,,The name of a concept for a molecular function from the GO ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/data_3028,Taxonomy,Taxonomic data,"Data concerning the classification, identification and naming of organisms.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,beta12orEarlier,,,,,,,,,,,,data_3028,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning the classification, identification and naming of organisms.",Taxonomic data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3029,Protein ID (EMBL/GenBank/DDBJ),,"EMBL/GENBANK/DDBJ coding feature protein identifier, issued by International collaborators.|This qualifier consists of a stable ID portion (3+5 format with 3 position letters and 5 numbers) plus a version number after the decimal point. When the protein sequence encoded by the CDS changes, only the version number of the /protein_id value is incremented; the stable part of the /protein_id remains unchanged and as a result will permanently be associated with a given protein; this qualifier is valid only on CDS features which translate into a valid protein.",FALSE,,,http://edamontology.org/data_2907,,beta13,,,,,,,,,,,,data_3029,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"EMBL/GENBANK/DDBJ coding feature protein identifier, issued by International collaborators.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3031,Core data,,"A type of data that (typically) corresponds to entries from the primary biological databases and which is (typically) the primary input or output of a tool, i.e. the data the tool processes or generates, as distinct from metadata and identifiers which describe and identify such core data, parameters that control the behaviour of tools, reports of derivative data generated by tools and annotation.|Core data entities typically have a format and may be identified by an accession number.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3031,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A type of data that (typically) corresponds to entries from the primary biological databases and which is (typically) the primary input or output of a tool, i.e. the data the tool processes or generates, as distinct from metadata and identifiers which describe and identify such core data, parameters that control the behaviour of tools, reports of derivative data generated by tools and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0006,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3034,Sequence feature identifier,,Name or other identifier of molecular sequence feature(s).,FALSE,,,http://edamontology.org/data_0976,,beta13,,,,,,,,,,,,data_3034,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of molecular sequence feature(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3035,Structure identifier,,"An identifier of a molecular tertiary structure, typically an entry from a structure database.",FALSE,,,http://edamontology.org/data_0976,,beta13,,,,,,,,,,,,data_3035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An identifier of a molecular tertiary structure, typically an entry from a structure database.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3036,Matrix identifier,,"An identifier of an array of numerical values, such as a comparison matrix.",FALSE,,,http://edamontology.org/data_0976,,beta13,,,,,,,,,,,,data_3036,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An identifier of an array of numerical values, such as a comparison matrix.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3085,Protein sequence composition,,A report (typically a table) on character or word composition / frequency of protein sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3085,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report (typically a table) on character or word composition / frequency of protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1261,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3086,Nucleic acid sequence composition (report),,A report (typically a table) on character or word composition / frequency of nucleic acid sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3086,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report (typically a table) on character or word composition / frequency of nucleic acid sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1261,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3101,Protein domain classification node,,A node from a classification of protein structural domain(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3101,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,A node from a classification of protein structural domain(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3102,CAS number,CAS registry number,"Unique numerical identifier of chemicals in the scientific literature, as assigned by the Chemical Abstracts Service.",FALSE,,,http://edamontology.org/data_2895,,beta13,,,,,,,,,,,,data_3102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Unique numerical identifier of chemicals in the scientific literature, as assigned by the Chemical Abstracts Service.",CAS registry number,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3103,ATC code,,"Unique identifier of a drug conforming to the Anatomical Therapeutic Chemical (ATC) Classification System, a drug classification system controlled by the WHO Collaborating Centre for Drug Statistics Methodology (WHOCC).",FALSE,,,http://edamontology.org/data_2895,,beta13,,,,,,,,,,,,data_3103,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Unique identifier of a drug conforming to the Anatomical Therapeutic Chemical (ATC) Classification System, a drug classification system controlled by the WHO Collaborating Centre for Drug Statistics Methodology (WHOCC).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3104,UNII,Unique Ingredient Identifier,"A unique, unambiguous, alphanumeric identifier of a chemical substance as catalogued by the Substance Registration System of the Food and Drug Administration (FDA).",FALSE,,,http://edamontology.org/data_1086,,beta13,,,,,,,,,,,,data_3104,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A unique, unambiguous, alphanumeric identifier of a chemical substance as catalogued by the Substance Registration System of the Food and Drug Administration (FDA).",Unique Ingredient Identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3105,Geotemporal metadata,,Basic information concerning geographical location or time.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3105,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Basic information concerning geographical location or time.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3106,System metadata,,"Metadata concerning the software, hardware or other aspects of a computer system.",FALSE,,,http://edamontology.org/data_2337,,beta13,,,,,,,,,,,,data_3106,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Metadata concerning the software, hardware or other aspects of a computer system.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3107,Sequence feature name,,"A name of a sequence feature, e.g. the name of a feature to be displayed to an end-user.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3107,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A name of a sequence feature, e.g. the name of a feature to be displayed to an end-user.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1022,,,,,,,,,,,,,1.15,,,,,,,
http://edamontology.org/data_3108,Experimental measurement,Experimental measurement data|Experimentally measured data|Measured data|Measurement|Measurement data|Raw experimental data|Measurement metadata,"Raw data such as measurements or other results from laboratory experiments, as generated from laboratory hardware.|This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation.",FALSE,,,http://edamontology.org/data_0006,,beta13,,,,,,,,,,,,data_3108,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Raw data such as measurements or other results from laboratory experiments, as generated from laboratory hardware.",Experimental measurement data|Experimentally measured data|Measured data|Measurement|Measurement data,Raw experimental data|Measurement metadata,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3110,Raw microarray data,,Raw data (typically MIAME-compliant) for hybridisations from a microarray experiment.|Such data as found in Affymetrix CEL or GPR files.,FALSE,,,http://edamontology.org/data_3108|http://edamontology.org/data_3117,,beta13,,,,,,,,,,,,data_3110,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw data (typically MIAME-compliant) for hybridisations from a microarray experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3111,Processed microarray data,Gene annotation (expression)|Gene expression report|Microarray probe set data,Data generated from processing and analysis of probe set data from a microarray experiment.|Such data as found in Affymetrix .CHP files or data from other software such as RMA or dChip.,FALSE,,,http://edamontology.org/data_3117,,beta13,,,,,,,,,,,,data_3111,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data generated from processing and analysis of probe set data from a microarray experiment.,Gene annotation (expression)|Gene expression report|Microarray probe set data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3112,Gene expression matrix,Normalised microarray data|Gene expression data matrix,The final processed (normalised) data for a set of hybridisations in a microarray experiment.|This combines data from all hybridisations.,FALSE,,,http://edamontology.org/data_2603|http://edamontology.org/data_2082,,beta13,,,,,,,,,,,,data_3112,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The final processed (normalised) data for a set of hybridisations in a microarray experiment.,Normalised microarray data|Gene expression data matrix,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3113,Sample annotation,,"Annotation on a biological sample, for example experimental factors and their values.|This might include compound and dose in a dose response experiment.",FALSE,,,http://edamontology.org/data_2337,,beta13,,,,,,,,,,,,data_3113,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotation on a biological sample, for example experimental factors and their values.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3115,Microarray metadata,,"Annotation on the array itself used in a microarray experiment.|This might include gene identifiers, genomic coordinates, probe oligonucleotide sequences etc.",FALSE,,,http://edamontology.org/data_2603,,beta13,,,,,,,,,,,,data_3115,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotation on the array itself used in a microarray experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3116,Microarray protocol annotation,,Annotation on laboratory and/or data processing protocols used in an microarray experiment.|This might describe e.g. the normalisation methods used to process the raw data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3116,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotation on laboratory and/or data processing protocols used in an microarray experiment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3117,Microarray hybridisation data,,Data concerning the hybridisations measured during a microarray experiment.,FALSE,,,http://edamontology.org/data_2603,,beta13,,,,,,,,,,,,data_3117,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning the hybridisations measured during a microarray experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3118,Protein features report (topological domains),,topological domains such as cytoplasmic regions in a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3118,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,topological domains such as cytoplasmic regions in a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3119,Sequence features (compositionally-biased regions),,A report of regions in a molecular sequence that are biased to certain characters.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3119,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1261,,,,,A report of regions in a molecular sequence that are biased to certain characters.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3122,Nucleic acid features (difference and change),,A report on features in a nucleic acid sequence that indicate changes to or differences between sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on features in a nucleic acid sequence that indicate changes to or differences between sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3123,Nucleic acid features report (expression signal),,regions within a nucleic acid sequence containing a signal that alters a biological function.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,regions within a nucleic acid sequence containing a signal that alters a biological function.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3125,Nucleic acid features report (binding),,nucleic acids binding to some other molecule.|This includes ribosome binding sites (Shine-Dalgarno sequence in prokaryotes).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,nucleic acids binding to some other molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3126,Nucleic acid repeats (report),,repetitive elements within a nucleic acid sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3126,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,repetitive elements within a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3127,Nucleic acid features report (replication and recombination),,DNA replication or recombination.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3127,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA replication or recombination.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3128,Nucleic acid structure report,Nucleic acid features (structure)|Stem loop (report)|d-loop (report)|Quadruplexes (report),A report on regions within a nucleic acid sequence which form secondary or tertiary (3D) structures.,FALSE,,,http://edamontology.org/data_2085|http://edamontology.org/data_2084,,beta13,,,,,,,,,,,,data_3128,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report on regions within a nucleic acid sequence which form secondary or tertiary (3D) structures.,Nucleic acid features (structure),Stem loop (report)|d-loop (report)|Quadruplexes (report),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3129,Protein features report (repeats),,short repetitive subsequences (repeat sequences) in a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3129,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,short repetitive subsequences (repeat sequences) in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1277,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3130,Sequence motif matches (protein),,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more protein sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3130,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more protein sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0858,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3131,Sequence motif matches (nucleic acid),,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more nucleic acid sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3131,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more nucleic acid sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_0858,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3132,Nucleic acid features (d-loop),,A report on displacement loops in a mitochondrial DNA sequence.|A displacement loop is a region of mitochondrial DNA in which one of the strands is displaced by an RNA molecule.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3132,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3128,,,,,A report on displacement loops in a mitochondrial DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3133,Nucleic acid features (stem loop),,A report on stem loops in a DNA sequence.|A stem loop is a hairpin structure; a double-helical structure formed when two complementary regions of a single strand of RNA or DNA molecule form base-pairs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3133,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3128,,,,,A report on stem loops in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3134,Gene transcript report,Gene transcript annotation|Clone or EST (report)|Transcript (report)|mRNA features|Nucleic acid features (mRNA features)|mRNA (report),"An informative report on features of a messenger RNA (mRNA) molecules including precursor RNA, primary (unprocessed) transcript and fully processed molecules. This includes reports on a specific gene transcript, clone or EST.
|This includes 5'untranslated region (5'UTR), coding sequences (CDS), exons, intervening sequences (intron) and 3'untranslated regions (3'UTR).",FALSE,,,http://edamontology.org/data_0916,,beta13,,,,,,,,,,,,data_3134,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report on features of a messenger RNA (mRNA) molecules including precursor RNA, primary (unprocessed) transcript and fully processed molecules. This includes reports on a specific gene transcript, clone or EST.
",Gene transcript annotation|Clone or EST (report)|Transcript (report)|mRNA features|Nucleic acid features (mRNA features)|mRNA (report),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3135,Nucleic acid features report (signal or transit peptide),,coding sequences for a signal or transit peptide.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3135,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,coding sequences for a signal or transit peptide.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3137,Non-coding RNA,,"features of non-coding or functional RNA molecules, including tRNA and rRNA.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3137,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"features of non-coding or functional RNA molecules, including tRNA and rRNA.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3138,Transcriptional features (report),,"Features concerning transcription of DNA into RNA including the regulation of transcription.|This includes promoters, CAAT signals, TATA signals, -35 signals, -10 signals, GC signals, primer binding sites for initiation of transcription or reverse transcription, enhancer, attenuator, terminators and ribosome binding sites.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3138,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3134,,,,,Features concerning transcription of DNA into RNA including the regulation of transcription.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3139,Nucleic acid features report (STS),,sequence tagged sites (STS) in nucleic acid sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3139,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sequence tagged sites (STS) in nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1276,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3140,Nucleic acid features (immunoglobulin gene structure),,"A report on predicted or actual immunoglobulin gene structure including constant, switch and variable regions and diversity, joining and variable segments.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3140,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0916,,,,,"A report on predicted or actual immunoglobulin gene structure including constant, switch and variable regions and diversity, joining and variable segments.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3141,SCOP class,,Information on a 'class' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3141,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'class' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3142,SCOP fold,,Information on a 'fold' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3142,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'fold' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3143,SCOP superfamily,,Information on a 'superfamily' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3143,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'superfamily' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3144,SCOP family,,Information on a 'family' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3144,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'family' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3145,SCOP protein,,Information on a 'protein' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3145,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'protein' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3146,SCOP species,,Information on a 'species' node from the SCOP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3146,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2980,,,,,Information on a 'species' node from the SCOP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3147,Mass spectrometry experiment,,mass spectrometry experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,data_3147,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,mass spectrometry experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3148,Gene family report,Nucleic acid classification|Gene annotation (homology information)|Gene homology (report)|Gene annotation (homology)|Homology information|Gene family annotation,"An informative report on a particular family of genes, typically a set of genes with similar sequence that originate from duplication of a common ancestor gene, or any other classification of nucleic acid sequences or structures that reflects gene structure.|This includes reports on on gene homologues between species.",FALSE,,,http://edamontology.org/data_2084,,beta13,,,,,,,,,,,,data_3148,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Nucleic acid classification,,,"An informative report on a particular family of genes, typically a set of genes with similar sequence that originate from duplication of a common ancestor gene, or any other classification of nucleic acid sequences or structures that reflects gene structure.",Gene annotation (homology information)|Gene homology (report)|Gene annotation (homology)|Homology information|Gene family annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3153,Protein image,,An image of a protein.,FALSE,,,http://edamontology.org/data_2968,,beta13,,,,,,,,,,,,data_3153,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3154,Protein alignment,,An alignment of protein sequences and/or structures.,FALSE,,,http://edamontology.org/data_1916,,beta13,,,,,,,,,,,,data_3154,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An alignment of protein sequences and/or structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3165,NGS experiment,,"sequencing experiment, including samples, sampling, preparation, sequencing, and analysis.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.0,,,,,,,,,,,,data_3165,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"sequencing experiment, including samples, sampling, preparation, sequencing, and analysis.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3181,Sequence assembly report,Assembly report,"An informative report about a DNA sequence assembly.|This might include an overall quality assement of the assembly and summary statistics including counts, average length and number of bases for reads, matches and non-matches, contigs, reads in pairs etc.",FALSE,,,http://edamontology.org/data_0867,,1.1,,,,,,,,,,,,data_3181,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report about a DNA sequence assembly.,Assembly report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3210,Genome index,,An index of a genome sequence.|Many sequence alignment tasks involving many or very large sequences rely on a precomputed index of the sequence to accelerate the alignment.,FALSE,,,http://edamontology.org/data_0955,,1.1,,,,,,,,,,,,data_3210,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An index of a genome sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3231,GWAS report,,Report concerning genome-wide association study experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,data_3231,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report concerning genome-wide association study experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3236,Cytoband position,,"The position of a cytogenetic band in a genome.|Information might include start and end position in a chromosome sequence, chromosome identifier, name of band and so on.",FALSE,,,http://edamontology.org/data_2012,,1.2,,,,,,,,,,,,data_3236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The position of a cytogenetic band in a genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3238,Cell type ontology ID,CL ID,Cell type ontology concept ID.,FALSE,,,http://edamontology.org/data_1087|http://edamontology.org/data_2893,,1.2|beta12orEarlier,,,,,,,,,,,,data_3238,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cell type ontology concept ID.,CL ID,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,CL_[0-9]{7},,
http://edamontology.org/data_3241,Kinetic model,,"Mathematical model of a network, that contains biochemical kinetics.",FALSE,,,http://edamontology.org/data_0950,,1.2,,,,,,,,,,,,data_3241,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mathematical model of a network, that contains biochemical kinetics.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3264,COSMIC ID,cosmic ID|COSMIC identifier|cosmic id|cosmic identifier,Identifier of a COSMIC database entry.,FALSE,,,http://edamontology.org/data_2294,,1.3,,,,,,,,,,,,data_3264,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a COSMIC database entry.,cosmic ID|COSMIC identifier|cosmic id|cosmic identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3265,HGMD ID,hgmd id|HGMD identifier|hgmd ID|hgmd identifier,Identifier of a HGMD database entry.,FALSE,,,http://edamontology.org/data_2294,,beta12orEarlier,,,,,,,,,,,,data_3265,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a HGMD database entry.,hgmd id|HGMD identifier|hgmd ID|hgmd identifier,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3266,Sequence assembly ID,Sequence assembly version,Unique identifier of sequence assembly.,FALSE,,,http://edamontology.org/data_1064,,1.3,,,,,,,,,,,,data_3266,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier of sequence assembly.,,Sequence assembly version,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3268,Sequence feature type,,"A label (text token) describing a type of sequence feature such as gene, transcript, cds, exon, repeat, simple, misc, variation, somatic variation, structural variation, somatic structural variation, constrained or regulatory.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.3,,,,,,,,,,,,data_3268,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0842,,,,,"A label (text token) describing a type of sequence feature such as gene, transcript, cds, exon, repeat, simple, misc, variation, somatic variation, structural variation, somatic structural variation, constrained or regulatory.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3269,Gene homology (report),,An informative report on gene homologues between species.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,data_3269,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3148,,,,,An informative report on gene homologues between species.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.5,,,,,,,
http://edamontology.org/data_3270,Ensembl gene tree ID,Ensembl ID (gene tree),Unique identifier for a gene tree from the Ensembl database.,FALSE,,,http://edamontology.org/data_2610|http://edamontology.org/data_1068,,1.3,,,,ENSGT00390000003602,,,,,,,,data_3270,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Unique identifier for a gene tree from the Ensembl database.,Ensembl ID (gene tree),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3271,Gene tree,,A phylogenetic tree that is an estimate of the character's phylogeny.,FALSE,,,http://edamontology.org/data_0872,,1.3,,,,,,,,,,,,data_3271,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A phylogenetic tree that is an estimate of the character's phylogeny.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3272,Species tree,,A phylogenetic tree that reflects phylogeny of the taxa from which the characters (used in calculating the tree) were sampled.,FALSE,,,http://edamontology.org/data_0872,,1.3,,,,,,,,,,,,data_3272,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A phylogenetic tree that reflects phylogeny of the taxa from which the characters (used in calculating the tree) were sampled.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3273,Sample ID,Sample accession,Name or other identifier of an entry from a biosample database.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,1.3,,,,,,,,,,,,data_3273,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name or other identifier of an entry from a biosample database.,Sample accession,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3274,MGI accession,,Identifier of an object from the MGI database.,FALSE,,,http://edamontology.org/data_2091|http://edamontology.org/data_2109,,1.3,,,,,,,,,,,,data_3274,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an object from the MGI database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3275,Phenotype name,Phenotypes|Phenotype,Name of a phenotype.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2099,,1.3,,,,,,,,,,,,data_3275,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Name of a phenotype.,Phenotypes|Phenotype,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3354,Transition matrix,HMM transition matrix,"A HMM transition matrix contains the probabilities of switching from one HMM state to another.|Consider for example an HMM with two states (AT-rich and GC-rich).  The transition matrix will hold the probabilities of switching from the AT-rich to the GC-rich state, and vica versa.",FALSE,,,http://edamontology.org/data_2082,,1.4,,,,,,,,,,,,data_3354,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A HMM transition matrix contains the probabilities of switching from one HMM state to another.,HMM transition matrix,,,,http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3355,Emission matrix,HMM emission matrix,"A HMM emission matrix holds the probabilities of choosing the four nucleotides (A, C, G and T) in each of the states of a HMM.|Consider for example an HMM with two states (AT-rich and GC-rich).  The emission matrix holds the probabilities of choosing each of the four nucleotides (A, C, G and T) in the AT-rich state and in the GC-rich state.",FALSE,,,http://edamontology.org/data_2082,,1.4,,,,,,,,,,,,data_3355,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A HMM emission matrix holds the probabilities of choosing the four nucleotides (A, C, G and T) in each of the states of a HMM.",HMM emission matrix,,,,http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3356,Hidden Markov model,,A statistical Markov model of a system which is assumed to be a Markov process with unobserved (hidden) states.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.4,,,,,,,,,,,,data_3356,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A statistical Markov model of a system which is assumed to be a Markov process with unobserved (hidden) states.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_1364,,,,,,,,,,,,,1.15,,,,,,,
http://edamontology.org/data_3358,Format identifier,,An identifier of a data format.,FALSE,,,http://edamontology.org/data_0976,,1.4,,,,,,,,,,,,data_3358,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a data format.,,,,,http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3424,Raw image,,Raw biological or biomedical image generated by some experimental technique.,FALSE,,,http://edamontology.org/data_2968,,beta12orEarlier|1.5,,,,,,,,,,,,data_3424,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw biological or biomedical image generated by some experimental technique.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3425,Carbohydrate property,Carbohydrate data,"Data concerning the intrinsic physical (e.g. structural) or chemical properties of one, more or all carbohydrates.",FALSE,,,http://edamontology.org/data_2087,,1.5,,,,,,,,,,,,data_3425,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning the intrinsic physical (e.g. structural) or chemical properties of one, more or all carbohydrates.",Carbohydrate data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3426,Proteomics experiment report,,Report concerning proteomics experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.5,,,,,,,,,,,,data_3426,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report concerning proteomics experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3427,RNAi report,,RNAi experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.5,,,,,,,,,,,,data_3427,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNAi experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3428,Simulation experiment report,,"biological computational model experiments (simulation), for example the minimum information required in order to permit its correct interpretation and reproduction.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.5,,,,,,,,,,,,data_3428,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"biological computational model experiments (simulation), for example the minimum information required in order to permit its correct interpretation and reproduction.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/data_2531,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/data_3442,MRI image,"Nuclear magnetic resonance imaging image
|Magnetic resonance tomography image |Magnetic resonance imaging image
|MRT image|NMRI image","An imaging technique that uses magnetic fields and radiowaves to form images, typically to investigate the anatomy and physiology of the human body.",FALSE,,,http://edamontology.org/data_3424,,1.7,,,,,,,,,,,,data_3442,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An imaging technique that uses magnetic fields and radiowaves to form images, typically to investigate the anatomy and physiology of the human body.","Nuclear magnetic resonance imaging image
|Magnetic resonance tomography image |Magnetic resonance imaging image
|MRT image|NMRI image",,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3449,Cell migration track image,,An image from a cell migration track assay.,FALSE,,,http://edamontology.org/data_2968,,1.7,,,,,,,,,,,,data_3449,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An image from a cell migration track assay.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3451,Rate of association,kon,Rate of association of a protein with another protein or some other molecule.,FALSE,,,http://edamontology.org/data_0897,,1.7,,,,,,,,,,,,data_3451,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Rate of association of a protein with another protein or some other molecule.,kon,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3479,Gene order,,Multiple gene identifiers in a specific order.|Such data are often used for genome rearrangement tools and phylogenetic tree labeling.,FALSE,,,http://edamontology.org/data_2082,,1.7,,,,,,,,,,,,data_3479,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Multiple gene identifiers in a specific order.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3483,Spectrum,Spectra,The spectrum of frequencies of electromagnetic radiation emitted from a molecule as a result of some spectroscopy experiment.,FALSE,,,http://edamontology.org/data_0006,,1.7,,,,,,,,,,,,data_3483,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The spectrum of frequencies of electromagnetic radiation emitted from a molecule as a result of some spectroscopy experiment.,Spectra,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3488,NMR spectrum,NMR spectra,Spectral information for a molecule from a nuclear magnetic resonance experiment.,FALSE,,,http://edamontology.org/data_3483,,1.7,,,,,,,,,,,,data_3488,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Spectral information for a molecule from a nuclear magnetic resonance experiment.,NMR spectra,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3490,Chemical structure sketch,Small molecule sketch,A sketch of a small molecule made with some specialised drawing package.|Chemical structure sketches are used for presentational purposes but also as inputs to various analysis software.,FALSE,,,http://edamontology.org/data_1712,,1.8,,,,,,,,,,,,data_3490,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A sketch of a small molecule made with some specialised drawing package.,Small molecule sketch,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3492,Nucleic acid signature,,An informative report about a specific or conserved nucleic acid sequence pattern.,FALSE,,,http://edamontology.org/data_2762,,1.8,,,,,,,,,,,,data_3492,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An informative report about a specific or conserved nucleic acid sequence pattern.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3494,DNA sequence,DNA sequences,A DNA sequence.,FALSE,,,http://edamontology.org/data_2977,,1.8,,,,,,,,,,,,data_3494,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A DNA sequence.,DNA sequences,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3495,RNA sequence,RNA sequences,,FALSE,,,http://edamontology.org/data_2977,,1.8,,,,,,,,,,,,data_3495,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA sequences,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3496,RNA sequence (raw),RNA raw sequence|Raw sequence (RNA),A raw RNA sequence.,FALSE,,,http://edamontology.org/data_3495|http://edamontology.org/data_2975,,1.8,,,,,,,,,,,,data_3496,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A raw RNA sequence.,RNA raw sequence|Raw sequence (RNA),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3497,DNA sequence (raw),DNA raw sequence|Raw sequence (DNA),A raw DNA sequence.,FALSE,,,http://edamontology.org/data_3494|http://edamontology.org/data_2975,,1.8,,,,,,,,,,,,data_3497,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A raw DNA sequence.,DNA raw sequence|Raw sequence (DNA),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3498,Sequence variations,Gene sequence variations,Data on gene sequence variations resulting large-scale genotyping and DNA sequencing projects.|Variations are stored along with a reference genome.,FALSE,,,http://edamontology.org/data_0006,,1.8,,,,,,,,,,,,data_3498,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data on gene sequence variations resulting large-scale genotyping and DNA sequencing projects.,Gene sequence variations,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3505,Bibliography,,A list of publications such as scientic papers or books.,FALSE,,,http://edamontology.org/data_2526,,1.8,,,,,,,,,,,,data_3505,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A list of publications such as scientic papers or books.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3509,Ontology mapping,,A mapping of supplied textual terms or phrases to ontology concepts (URIs).,FALSE,,,http://edamontology.org/data_2093,,beta12orEarlier,,,,,,,,,,,,data_3509,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A mapping of supplied textual terms or phrases to ontology concepts (URIs).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3546,Image metadata,Image-associated data|Image-related data,"Any data concerning a specific biological or biomedical image.|This can include basic provenance and technical information about the image, scientific annotation and so on.",FALSE,,,http://edamontology.org/data_2048,,1.9,,,,,,,,,,,,data_3546,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Any data concerning a specific biological or biomedical image.,Image-associated data|Image-related data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3558,Clinical trial report,Clinical trial information,A report concerning a clinical trial.,FALSE,,,http://edamontology.org/data_2048,,1.9,,,,,,,,,,,,data_3558,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report concerning a clinical trial.,Clinical trial information,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3567,Reference sample report,Biosample report,A report about a biosample.,FALSE,,,http://edamontology.org/data_2048,,1.10,,,,,,,,,,,,data_3567,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report about a biosample.,Biosample report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3568,Gene Expression Atlas Experiment ID,,Accession number of an entry from the Gene Expression Atlas.,FALSE,,,http://edamontology.org/data_1078,,1.10,,,,,,,,,,,,data_3568,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Accession number of an entry from the Gene Expression Atlas.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3667,Disease identifier,,Identifier of an entry from a database of disease.,FALSE,,,http://edamontology.org/data_0976|http://edamontology.org/data_2091,,beta12orEarlier,,,,,,,,,,,,data_3667,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of an entry from a database of disease.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3668,Disease name,,The name of some disease.,FALSE,,,http://edamontology.org/data_3667|http://edamontology.org/data_2099,,1.12,,,,,,,,,,,,data_3668,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The name of some disease.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3669,Training material,OER|Open educational resource,Some material that is used for educational (training) purposes.,FALSE,,,http://edamontology.org/data_0006,,1.12,,,,,,,,,,,,data_3669,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some material that is used for educational (training) purposes.,,OER|Open educational resource,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3670,Online course,On-line course|Massive open online course|MOOC,A training course available for use on the Web.,FALSE,,,http://edamontology.org/data_3669,,1.12,,,,,,,,,,,,data_3670,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A training course available for use on the Web.,On-line course,Massive open online course|MOOC,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3671,Text,Free text|Textual search query|Plain text,"Any free or plain text, typically for human consumption and in English. Can instantiate also as a textual search query.",FALSE,,,http://edamontology.org/data_2526,,1.12,,,,,,,,,,,,data_3671,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Any free or plain text, typically for human consumption and in English. Can instantiate also as a textual search query.",Free text,Textual search query|Plain text,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3707,Biodiversity report,Biodiversity information|OTU table,A report about biodiversity data.,FALSE,,,http://edamontology.org/data_3736|http://edamontology.org/data_2048,,1.9,,,,,,,,,,,,data_3707,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report about biodiversity data.,Biodiversity information,OTU table,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3716,Biosafety report,Biosafety information,A report about biosafety data.,FALSE,,,http://edamontology.org/data_2048,,1.14,,,,,,,,,,,,data_3716,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report about biosafety data.,Biosafety information,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3717,Isolation report,Geographic location|Isolation source,A report about any kind of isolation of biological material.,FALSE,,,http://edamontology.org/data_2048,,1.14,,,,,,,,,,,,data_3717,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report about any kind of isolation of biological material.,,Geographic location|Isolation source,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3718,Pathogenicity report,Pathogenicity,Information about the ability of an organism to cause disease in a corresponding host.,FALSE,,,http://edamontology.org/data_3716,,1.14,,,,,,,,,,,,data_3718,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Information about the ability of an organism to cause disease in a corresponding host.,Pathogenicity,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3719,Biosafety classification,Biosafety level,Information about the biosafety classification of an organism according to corresponding law.,FALSE,,,http://edamontology.org/data_3716,,1.14,,,,,,,,,,,,data_3719,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Information about the biosafety classification of an organism according to corresponding law.,Biosafety level,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3720,Geographic location,,A report about localisation of the isolaton of biological material e.g. country or coordinates.,FALSE,,,http://edamontology.org/data_3717,,1.14,,,,,,,,,,,,data_3720,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A report about localisation of the isolaton of biological material e.g. country or coordinates.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3721,Isolation source,,"A report about any kind of isolation source of biological material e.g. blood, water, soil.",FALSE,,,http://edamontology.org/data_3717,,1.14,,,,,,,,,,,,data_3721,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report about any kind of isolation source of biological material e.g. blood, water, soil.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3722,Physiology parameter,,"Experimentally determined parameter of the physiology of an organism, e.g. substrate spectrum.",FALSE,,,http://edamontology.org/data_3108,,1.14,,,,,,,,,,,,data_3722,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Experimentally determined parameter of the physiology of an organism, e.g. substrate spectrum.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3723,Morphology parameter,,"Experimentally determined parameter of the morphology of an organism, e.g. size & shape.",FALSE,,,http://edamontology.org/data_3108,,1.14,,,,,,,,,,,,data_3723,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Experimentally determined parameter of the morphology of an organism, e.g. size & shape.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3724,Cultivation parameter,Cultivation conditions|Salinity|Nitrogen source|Culture media composition|pH value|Carbon source|Temperature,Experimental determined parameter for the cultivation of an organism.,FALSE,,,http://edamontology.org/data_3108,,1.14,,,,,,,,,,,,data_3724,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Experimental determined parameter for the cultivation of an organism.,Cultivation conditions,Salinity|Nitrogen source|Culture media composition|pH value|Carbon source|Temperature,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3732,Sequencing metadata name,,"Data concerning a sequencing experiment, that may be specified as an input to some tool.",FALSE,,,http://edamontology.org/data_2099,,1.15,,,,,,,,,,,,data_3732,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data concerning a sequencing experiment, that may be specified as an input to some tool.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3733,Flow cell identifier,,"An identifier of a flow cell of a sequencing machine.|A flow cell is used to immobilise, amplify and sequence millions of molecules at once.  In Illumina machines, a flowcell is composed of  8 ""lanes"" which allows 8 experiments in a single analysis.",FALSE,,,http://edamontology.org/data_3732,,1.15,,,,,,,,,,,,data_3733,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a flow cell of a sequencing machine.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3734,Lane identifier,,"An identifier of a lane within a flow cell of a sequencing machine, within which millions of sequences are immobilised, amplified and sequenced.",FALSE,,,http://edamontology.org/data_3732,,1.15,,,,,,,,,,,,data_3734,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An identifier of a lane within a flow cell of a sequencing machine, within which millions of sequences are immobilised, amplified and sequenced.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3735,Run number,,"A number corresponding to the number of an analysis performed by a sequencing machine.  For example, if it's the 13th analysis, the run is 13.
",FALSE,,,http://edamontology.org/data_3732,,1.15,,,,,,,,,,,,data_3735,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A number corresponding to the number of an analysis performed by a sequencing machine.  For example, if it's the 13th analysis, the run is 13.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3736,Ecological data,,"Data concerning ecology; for example measurements and reports from the study of interactions among organisms and their environment.|This is a broad data type and is used a placeholder for other, more specific types.",FALSE,,,http://edamontology.org/data_0006,,1.15,,,,,,,,,,,,data_3736,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data concerning ecology; for example measurements and reports from the study of interactions among organisms and their environment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3737,Alpha diversity data,α-diversity,The mean species diversity in sites or habitats at a local scale.,FALSE,,,http://edamontology.org/data_3707,,1.15,,,,,,,,,,,,data_3737,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The mean species diversity in sites or habitats at a local scale.,α-diversity,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3738,Beta diversity data,True beta diversity|β-diversity,The ratio between regional and local species diversity.,FALSE,,,http://edamontology.org/data_3707,,1.15,,,,,,,,,,,,data_3738,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The ratio between regional and local species diversity.,True beta diversity|β-diversity,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3739,Gamma diversity data,γ-diversity,The total species diversity in a landscape. ,FALSE,,,http://edamontology.org/data_3707,,1.15,,,,,,,,,,,,data_3739,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The total species diversity in a landscape. ,γ-diversity,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3743,Ordination plot,,"A plot in which community data (e.g. species abundance data) is summarised.  Similar species and samples are plotted close together, and dissimilar species and samples are plotted placed far apart.",FALSE,,,http://edamontology.org/data_2884|http://edamontology.org/data_0897,,1.15,,,,,,,,,,,,data_3743,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A plot in which community data (e.g. species abundance data) is summarised.  Similar species and samples are plotted close together, and dissimilar species and samples are plotted placed far apart.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3753,Over-representation report,Enrichment report|Functional enrichment report,"An informative report containing a ranked list of categories (usually ontology concepts), each associated with a statistical metric of over-/under-representation within the studied data.",FALSE,,,http://edamontology.org/data_2048,,1.16,,,,,,,,,,,,data_3753,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An informative report containing a ranked list of categories (usually ontology concepts), each associated with a statistical metric of over-/under-representation within the studied data.",Enrichment report,Functional enrichment report,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3754,GO-term enrichment report,GO-term report|Gene ontology term enrichment report|Gene ontology enrichment report|Gene ontology concept over-representation report,"An informative report containing a ranked list of Gene Ontology concepts, each associated with a p-value, concerning or derived from the analysis of e.g. a set of genes or proteins.",FALSE,,,http://edamontology.org/data_3753,,1.16,,,,,,,,,,,,data_3754,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GO-term report,,,"An informative report containing a ranked list of Gene Ontology concepts, each associated with a p-value, concerning or derived from the analysis of e.g. a set of genes or proteins.",Gene ontology term enrichment report|Gene ontology enrichment report|Gene ontology concept over-representation report,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3756,Localisation score,PTM localisation|False localisation rate|PTM score,Score for localization of one or more post-translational modifications in peptide sequence measured by mass spectrometry.,FALSE,,,http://edamontology.org/data_1772,,1.16,,,,,,,,,,,,data_3756,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Score for localization of one or more post-translational modifications in peptide sequence measured by mass spectrometry.,,PTM localisation|False localisation rate|PTM score,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3757,Unimod ID,,Identifier of a protein modification catalogued in the Unimod database.,FALSE,,,http://edamontology.org/data_2618,,1.16,,,,,,,,,,,,data_3757,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier of a protein modification catalogued in the Unimod database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3759,ProteomeXchange ID,,Identifier for mass spectrometry proteomics data in the proteomexchange.org repository.,FALSE,,,http://edamontology.org/data_1078,,1.16,,,,,,,,,,,,data_3759,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identifier for mass spectrometry proteomics data in the proteomexchange.org repository.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3768,Clustered gene expression profiles,,Groupings of gene expression profiles according to a clustering algorithm.,FALSE,,,http://edamontology.org/data_2603,,1.16,,,,,,,,,,,,data_3768,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Groupings of gene expression profiles according to a clustering algorithm.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3769,BRENDA ontology concept ID,,An identifier of a concept from the BRENDA ontology.,FALSE,,,http://edamontology.org/data_1087,,1.16,,,,,,,,,,,,data_3769,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An identifier of a concept from the BRENDA ontology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#identifiers|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3779,Annotated text,,"A text (such as a scientific article), annotated with notes, data and metadata, such as recognised entities, concepts, and their relations.",FALSE,,,http://edamontology.org/data_2526|http://edamontology.org/data_3671,,1.16,,,,,,,,,,,,data_3779,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A text (such as a scientific article), annotated with notes, data and metadata, such as recognised entities, concepts, and their relations.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/data_3786,Query script,,"A structured query, in form of a script, that defines a database search task.",FALSE,,,http://edamontology.org/data_0006,,1.16,,,,,,,,,,,,data_3786,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A structured query, in form of a script, that defines a database search task.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1196,SMILES,,Chemical structure specified in Simplified Molecular Input Line Entry System (SMILES) line notation.,FALSE,,,http://edamontology.org/format_2035|http://edamontology.org/format_2330,,beta12orEarlier,,,http://www.daylight.com/dayhtml/doc/theory/theory.smiles.html|http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification,,,,,,,,,format_1196,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.daylight.com/dayhtml/doc/theory/theory.smiles.html|http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification,Chemical structure specified in Simplified Molecular Input Line Entry System (SMILES) line notation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1197,InChI,,Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation.,FALSE,,,http://edamontology.org/format_2035|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1197,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1198,mf,,"Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound.|The general MF query format consists of a series of valid atomic symbols, with an optional number or range.",FALSE,,,http://edamontology.org/format_2035|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1198,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1199,InChIKey,,The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound.|An InChIKey identifier is not human- nor machine-readable but is more suitable for web searches than an InChI chemical structure specification.,FALSE,,,http://edamontology.org/format_2035|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1199,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1200,smarts,,"SMILES ARbitrary Target Specification (SMARTS) format for chemical structure specification, which is a subset of the SMILES line notation.",FALSE,,,http://edamontology.org/format_1196,,beta12orEarlier,,,,,,,,,,,,format_1200,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"SMILES ARbitrary Target Specification (SMARTS) format for chemical structure specification, which is a subset of the SMILES line notation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1206,unambiguous pure,,Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.,FALSE,,,http://edamontology.org/format_2094|http://edamontology.org/format_2096,,beta12orEarlier,,,,,,,,,,,,format_1206,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1207,nucleotide,,"Alphabet for a nucleotide sequence with possible ambiguity, unknown positions and non-sequence characters.|Non-sequence characters may be used for example for gaps.",FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1207,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a nucleotide sequence with possible ambiguity, unknown positions and non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1208,protein,,"Alphabet for a protein sequence with possible ambiguity, unknown positions and non-sequence characters.|Non-sequence characters may be used for gaps and translation stop.",FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1208,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a protein sequence with possible ambiguity, unknown positions and non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1209,consensus,,Alphabet for the consensus of two or more molecular sequences.,FALSE,,,http://edamontology.org/format_2097|http://edamontology.org/format_2095,,beta12orEarlier,,,,,,,,,,,,format_1209,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for the consensus of two or more molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1210,pure nucleotide,,Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.,FALSE,,,http://edamontology.org/format_2094|http://edamontology.org/format_1207,,beta12orEarlier,,,,,,,,,,,,format_1210,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1211,unambiguous pure nucleotide,,Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .,FALSE,,,http://edamontology.org/format_1206|http://edamontology.org/format_1207,,beta12orEarlier,,,,,,,,,,,,format_1211,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1212,dna,,"Alphabet for a DNA sequence with possible ambiguity, unknown positions and non-sequence characters.",FALSE,,,http://edamontology.org/format_1207,,beta12orEarlier,,,,,,,,,,,,format_1212,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a DNA sequence with possible ambiguity, unknown positions and non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1213,rna,,"Alphabet for an RNA sequence with possible ambiguity, unknown positions and non-sequence characters.",FALSE,,,http://edamontology.org/format_1207,,beta12orEarlier,,,,,,,,,,,,format_1213,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for an RNA sequence with possible ambiguity, unknown positions and non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1214,unambiguous pure dna,,Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.,FALSE,,,http://edamontology.org/format_1206|http://edamontology.org/format_1212,,beta12orEarlier,,,,,,,,,,,,format_1214,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1215,pure dna,,Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.,FALSE,,,http://edamontology.org/format_1212|http://edamontology.org/format_1210,,beta12orEarlier,,,,,,,,,,,,format_1215,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1216,unambiguous pure rna sequence,,Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.,FALSE,,,http://edamontology.org/format_1213|http://edamontology.org/format_1206,,beta12orEarlier,,,,,,,,,,,,format_1216,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1217,pure rna,,Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.,FALSE,,,http://edamontology.org/format_1213|http://edamontology.org/format_1210,,beta12orEarlier,,,,,,,,,,,,format_1217,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1218,unambiguous pure protein,,Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.,FALSE,,,http://edamontology.org/format_1208|http://edamontology.org/format_1206,,beta12orEarlier,,,,,,,,,,,,format_1218,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1219,pure protein,,Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.,FALSE,,,http://edamontology.org/format_1208|http://edamontology.org/format_2094,,beta12orEarlier,,,,,,,,,,,,format_1219,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1228,UniGene entry format,,"Format of an entry from UniGene.|A UniGene entry includes a set of transcript sequences assigned to the same transcription locus (gene or expressed pseudogene), with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1228,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from UniGene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1247,COG sequence cluster format,,Format of an entry from the COG database of clusters of (related) protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1247,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the COG database of clusters of (related) protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1248,EMBL feature location,Feature location,Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank database.,FALSE,,,http://edamontology.org/format_2078|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1248,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank database.,Feature location,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1295,quicktandem,,Report format for tandem repeats in a nucleotide sequence (format generated by the Sanger Centre quicktandem program).,FALSE,,,http://edamontology.org/format_2155|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1295,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for tandem repeats in a nucleotide sequence (format generated by the Sanger Centre quicktandem program).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1296,Sanger inverted repeats,,Report format for inverted repeats in a nucleotide sequence (format generated by the Sanger Centre inverted program).,FALSE,,,http://edamontology.org/format_2155|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1296,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for inverted repeats in a nucleotide sequence (format generated by the Sanger Centre inverted program).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1297,EMBOSS repeat,,Report format for tandem repeats in a sequence (an EMBOSS report format).,FALSE,,,http://edamontology.org/format_2155|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1297,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for tandem repeats in a sequence (an EMBOSS report format).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1316,est2genome format,,Format of a report on exon-intron structure generated by EMBOSS est2genome.,FALSE,,,http://edamontology.org/format_2031|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1316,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on exon-intron structure generated by EMBOSS est2genome.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1318,restrict format,,Report format for restriction enzyme recognition sites used by EMBOSS restrict program.,FALSE,,,http://edamontology.org/format_2158|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1318,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for restriction enzyme recognition sites used by EMBOSS restrict program.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1319,restover format,,Report format for restriction enzyme recognition sites used by EMBOSS restover program.,FALSE,,,http://edamontology.org/format_2158|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1319,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for restriction enzyme recognition sites used by EMBOSS restover program.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1320,REBASE restriction sites,,Report format for restriction enzyme recognition sites used by REBASE database.,FALSE,,,http://edamontology.org/format_2158|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1320,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format for restriction enzyme recognition sites used by REBASE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1332,FASTA search results format,,"Format of results of a sequence database search using FASTA.|This includes (typically) score data, alignment data and a histogram (of observed and expected distribution of E values.)",FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1332,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a sequence database search using FASTA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1333,BLAST results,,"Format of results of a sequence database search using some variant of BLAST.|This includes score data, alignment data and summary table.",FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1333,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a sequence database search using some variant of BLAST.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1334,mspcrunch,,Format of results of a sequence database search using some variant of MSPCrunch.,FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1334,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a sequence database search using some variant of MSPCrunch.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1335,Smith-Waterman format,,Format of results of a sequence database search using some variant of Smith Waterman.,FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1335,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a sequence database search using some variant of Smith Waterman.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1336,dhf,,Format of EMBASSY domain hits file (DHF) of hits (sequences) with domain classification information.|The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database.,FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1336,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of EMBASSY domain hits file (DHF) of hits (sequences) with domain classification information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1337,lhf,,Format of EMBASSY ligand hits file (LHF) of database hits (sequences) with ligand classification information.|The hits are putative ligand-binding sequences and are found from a search of a sequence database.,FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1337,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of EMBASSY ligand hits file (LHF) of database hits (sequences) with ligand classification information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1341,InterPro hits format,,Results format for searches of the InterPro database.,FALSE,,,http://edamontology.org/format_2066|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1341,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Results format for searches of the InterPro database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1342,InterPro protein view report format,,Format of results of a search of the InterPro database showing matches of query protein sequence(s) to InterPro entries.|The report includes a classification of regions in a query protein sequence which are assigned to a known InterPro protein family or group.,FALSE,,,http://edamontology.org/format_1341,,beta12orEarlier,,,,,,,,,,,,format_1342,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a search of the InterPro database showing matches of query protein sequence(s) to InterPro entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1343,InterPro match table format,,"Format of results of a search of the InterPro database showing matches between protein sequence(s) and signatures for an InterPro entry.|The table presents matches between query proteins (rows) and signature methods (columns) for this entry. Alternatively the sequence(s) might be from from the InterPro entry itself. The match position in the protein sequence and match status (true positive, false positive etc) are indicated.",FALSE,,,http://edamontology.org/format_1341,,beta12orEarlier,,,,,,,,,,,,format_1343,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of results of a search of the InterPro database showing matches between protein sequence(s) and signatures for an InterPro entry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1349,HMMER Dirichlet prior,,Dirichlet distribution HMMER format.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2074,,beta12orEarlier,,,,,,,,,,,,format_1349,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Dirichlet distribution HMMER format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1350,MEME Dirichlet prior,,Dirichlet distribution MEME format.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2074,,beta12orEarlier,,,,,,,,,,,,format_1350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Dirichlet distribution MEME format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1351,HMMER emission and transition,,Format of a report from the HMMER package on the emission and transition counts of a hidden Markov model.,FALSE,,,http://edamontology.org/format_2075|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1351,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report from the HMMER package on the emission and transition counts of a hidden Markov model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1356,prosite-pattern,,Format of a regular expression pattern from the Prosite database.,FALSE,,,http://edamontology.org/format_2068|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1356,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a regular expression pattern from the Prosite database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1357,EMBOSS sequence pattern,,Format of an EMBOSS sequence pattern.,FALSE,,,http://edamontology.org/format_2068|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1357,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of an EMBOSS sequence pattern.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1360,meme-motif,,A motif in the format generated by the MEME program.,FALSE,,,http://edamontology.org/format_2068|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1360,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A motif in the format generated by the MEME program.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1366,prosite-profile,,Sequence profile (sequence classifier) format used in the PROSITE database.,FALSE,,,http://edamontology.org/format_2069|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence profile (sequence classifier) format used in the PROSITE database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1367,JASPAR format,,A profile (sequence classifier) in the format used in the JASPAR database.,FALSE,,,http://edamontology.org/format_2069|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1367,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A profile (sequence classifier) in the format used in the JASPAR database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1369,MEME background Markov model,,Format of the model of random sequences used by MEME.,FALSE,,,http://edamontology.org/format_2072|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1369,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of the model of random sequences used by MEME.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1370,HMMER format,,Format of a hidden Markov model representation used by the HMMER package.,FALSE,,,http://edamontology.org/format_2072|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1370,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a hidden Markov model representation used by the HMMER package.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1391,HMMER-aln,,FASTA-style format for multiple sequences aligned by HMMER package to an HMM.,FALSE,,,http://edamontology.org/format_2200|http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1391,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTA-style format for multiple sequences aligned by HMMER package to an HMM.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1392,DIALIGN format,,Format of multiple sequences aligned by DIALIGN package.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1392,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of multiple sequences aligned by DIALIGN package.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1393,daf,,"EMBASSY 'domain alignment file' (DAF) format, containing a sequence alignment of protein domains belonging to the same SCOP or CATH family.|The format is clustal-like and includes annotation of domain family classification information.",FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1393,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"EMBASSY 'domain alignment file' (DAF) format, containing a sequence alignment of protein domains belonging to the same SCOP or CATH family.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1419,Sequence-MEME profile alignment,,Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package.,FALSE,,,http://edamontology.org/format_2014|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1419,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1421,HMMER profile alignment (sequences versus HMMs),,Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database.,FALSE,,,http://edamontology.org/format_2014|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1421,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1422,HMMER profile alignment (HMM versus sequences),,Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database.,FALSE,,,http://edamontology.org/format_2014|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1422,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1423,Phylip distance matrix,,"Format of PHYLIP phylogenetic distance matrix data.|Data Type must include the distance matrix, probably as pairs of sequence identifiers with a distance (integer or float).",FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2067,,beta12orEarlier,,,,,,,,,,,,format_1423,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of PHYLIP phylogenetic distance matrix data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1424,ClustalW dendrogram,,Dendrogram (tree file) format generated by ClustalW.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1424,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Dendrogram (tree file) format generated by ClustalW.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1425,Phylip tree raw,,Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1425,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1430,Phylip continuous quantitative characters,,PHYLIP file format for continuous quantitative character data.,FALSE,,,http://edamontology.org/format_2037|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1430,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PHYLIP file format for continuous quantitative character data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1431,Phylogenetic property values format,,Format of phylogenetic property data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1431,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2036,,,,,Format of phylogenetic property data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1432,Phylip character frequencies format,,PHYLIP file format for phylogenetics character frequency data.,FALSE,,,http://edamontology.org/format_2037|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1432,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PHYLIP file format for phylogenetics character frequency data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1433,Phylip discrete states format,,Format of PHYLIP discrete states data.,FALSE,,,http://edamontology.org/format_2038|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1433,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of PHYLIP discrete states data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1434,Phylip cliques format,,Format of PHYLIP cliques data.,FALSE,,,http://edamontology.org/format_2039|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1434,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of PHYLIP cliques data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1435,Phylip tree format,,Phylogenetic tree data format used by the PHYLIP program.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1435,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree data format used by the PHYLIP program.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1436,TreeBASE format,,The format of an entry from the TreeBASE database of phylogenetic data.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1436,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The format of an entry from the TreeBASE database of phylogenetic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1437,TreeFam format,,The format of an entry from the TreeFam database of phylogenetic data.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1437,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The format of an entry from the TreeFam database of phylogenetic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1445,Phylip tree distance format,,"Format for distances, such as Branch Score distance, between two or more phylogenetic trees as used by the Phylip package.",FALSE,,,http://edamontology.org/format_2049|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1445,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format for distances, such as Branch Score distance, between two or more phylogenetic trees as used by the Phylip package.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1454,dssp,,"Format of an entry from the DSSP database (Dictionary of Secondary Structure in Proteins).|The DSSP database is built using the DSSP application which defines secondary structure, geometrical features and solvent exposure of proteins, given atomic coordinates in PDB format.",FALSE,,,http://edamontology.org/format_2077|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1454,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of an entry from the DSSP database (Dictionary of Secondary Structure in Proteins).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1455,hssp,,Entry format of the HSSP database (Homology-derived Secondary Structure in Proteins).,FALSE,,,http://edamontology.org/format_2077|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1455,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entry format of the HSSP database (Homology-derived Secondary Structure in Proteins).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1457,Dot-bracket format,Vienna RNA secondary structure format|Vienna RNA format,"Format of RNA secondary structure in dot-bracket notation, originally generated by the Vienna RNA package/server.",FALSE,,,http://edamontology.org/format_2076|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1457,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of RNA secondary structure in dot-bracket notation, originally generated by the Vienna RNA package/server.",Vienna RNA secondary structure format|Vienna RNA format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1458,Vienna local RNA secondary structure format,,"Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server.",FALSE,,,http://edamontology.org/format_1457|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1458,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1475,PDB database entry format,PDB entry format,Format of an entry (or part of an entry) from the PDB database.,FALSE,,,http://edamontology.org/format_2033,,beta12orEarlier,,,,,,,,,,,,format_1475,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of an entry (or part of an entry) from the PDB database.,PDB entry format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1476,PDB,PDB format,Entry format of PDB database in PDB format.,FALSE,,,http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1476,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entry format of PDB database in PDB format.,PDB format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1477,mmCIF,mmcif,Entry format of PDB database in mmCIF format.,FALSE,,,http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1477,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entry format of PDB database in mmCIF format.,mmcif,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1478,PDBML,,Entry format of PDB database in PDBML (XML) format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_1475,,beta12orEarlier,,,,,,,,,,,,format_1478,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entry format of PDB database in PDBML (XML) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1500,Domainatrix 3D-1D scoring matrix format,,Format of a matrix of 3D-1D scores used by the EMBOSS Domainatrix applications.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1500,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a matrix of 3D-1D scores used by the EMBOSS Domainatrix applications.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_2064,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1504,aaindex,,Amino acid index format used by the AAindex database.,FALSE,,,http://edamontology.org/format_2017|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1504,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Amino acid index format used by the AAindex database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1511,IntEnz enzyme report format,,"Format of an entry from IntEnz (The Integrated Relational Enzyme Database).|IntEnz is the master copy of the Enzyme Nomenclature, the recommendations of the NC-IUBMB on the Nomenclature and Classification of Enzyme-Catalysed Reactions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1511,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from IntEnz (The Integrated Relational Enzyme Database).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1512,BRENDA enzyme report format,,Format of an entry from the BRENDA enzyme database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1512,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the BRENDA enzyme database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1513,KEGG REACTION enzyme report format,,Format of an entry from the KEGG REACTION database of biochemical reactions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1513,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the KEGG REACTION database of biochemical reactions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1514,KEGG ENZYME enzyme report format,,Format of an entry from the KEGG ENZYME database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1514,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the KEGG ENZYME database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1515,REBASE proto enzyme report format,,Format of an entry from the proto section of the REBASE enzyme database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1515,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the proto section of the REBASE enzyme database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1516,REBASE withrefm enzyme report format,,Format of an entry from the withrefm section of the REBASE enzyme database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1516,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the withrefm section of the REBASE enzyme database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1551,Pcons report format,,Format of output of the Pcons Model Quality Assessment Program (MQAP).|Pcons ranks protein models by assessing their quality based on the occurrence of recurring common three-dimensional structural patterns. Pcons returns a score reflecting the overall global quality and a score for each individual residue in the protein reflecting the local residue quality.,FALSE,,,http://edamontology.org/format_2065|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1551,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of output of the Pcons Model Quality Assessment Program (MQAP).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1552,ProQ report format,,Format of output of the ProQ protein model quality predictor.|ProQ is a neural network-based predictor that predicts the quality of a protein model based on the number of structural features.,FALSE,,,http://edamontology.org/format_2065|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1552,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of output of the ProQ protein model quality predictor.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1563,SMART domain assignment report format,,"Format of SMART domain assignment data.|The SMART output file includes data on genetically mobile domains / analysis of domain architectures, including phyletic distributions, functional class, tertiary structures and functionally important residues.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1563,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of SMART domain assignment data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1568,BIND entry format,,Entry format for the BIND database of protein interaction.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1568,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the BIND database of protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1569,IntAct entry format,,Entry format for the IntAct database of protein interaction.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1569,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the IntAct database of protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1570,InterPro entry format,,"Entry format for the InterPro database of protein signatures (sequence classifiers) and classified sequences.|This includes signature metadata, sequence references and a reference to the signature itself. There is normally a header (entry accession numbers and name), abstract, taxonomy information, example proteins etc. Each entry also includes a match list which give a number of different views of the signature matches for the sequences in each InterPro entry.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1570,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the InterPro database of protein signatures (sequence classifiers) and classified sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1571,InterPro entry abstract format,,Entry format for the textual abstract of signatures in an InterPro entry and its protein matches.|References are included and a functional inference is made where possible.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1571,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the textual abstract of signatures in an InterPro entry and its protein matches.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1572,Gene3D entry format,,Entry format for the Gene3D protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1572,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the Gene3D protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1573,PIRSF entry format,,Entry format for the PIRSF protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1573,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the PIRSF protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1574,PRINTS entry format,,Entry format for the PRINTS protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1574,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the PRINTS protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1575,Panther Families and HMMs entry format,,Entry format for the Panther library of protein families and subfamilies.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1575,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the Panther library of protein families and subfamilies.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1576,Pfam entry format,,Entry format for the Pfam protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1576,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the Pfam protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1577,SMART entry format,,Entry format for the SMART protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1577,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the SMART protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1578,Superfamily entry format,,Entry format for the Superfamily protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1578,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the Superfamily protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1579,TIGRFam entry format,,Entry format for the TIGRFam protein secondary database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1579,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the TIGRFam protein secondary database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1580,ProDom entry format,,Entry format for the ProDom protein domain classification database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1580,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the ProDom protein domain classification database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1581,FSSP entry format,,Entry format for the FSSP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1581,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the FSSP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1582,findkm,,"A report format for the kinetics of enzyme-catalysed reaction(s) in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax).",FALSE,,,http://edamontology.org/format_2027|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A report format for the kinetics of enzyme-catalysed reaction(s) in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1603,Ensembl gene report format,,Entry format of Ensembl genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1603,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of Ensembl genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1604,DictyBase gene report format,,Entry format of DictyBase genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1604,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of DictyBase genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1605,CGD gene report format,,Entry format of Candida Genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1605,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of Candida Genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1606,DragonDB gene report format,,Entry format of DragonDB genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1606,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of DragonDB genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1607,EcoCyc gene report format,,Entry format of EcoCyc genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1607,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of EcoCyc genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1608,FlyBase gene report format,,Entry format of FlyBase genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1608,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of FlyBase genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1609,Gramene gene report format,,Entry format of Gramene genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1609,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of Gramene genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1610,KEGG GENES gene report format,,Entry format of KEGG GENES genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1610,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of KEGG GENES genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1611,MaizeGDB gene report format,,Entry format of the Maize genetics and genomics database (MaizeGDB).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1611,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Maize genetics and genomics database (MaizeGDB).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1612,MGD gene report format,,Entry format of the Mouse Genome Database (MGD).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1612,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Mouse Genome Database (MGD).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1613,RGD gene report format,,Entry format of the Rat Genome Database (RGD).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1613,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Rat Genome Database (RGD).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1614,SGD gene report format,,Entry format of the Saccharomyces Genome Database (SGD).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1614,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Saccharomyces Genome Database (SGD).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1615,GeneDB gene report format,,Entry format of the Sanger GeneDB genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1615,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Sanger GeneDB genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1616,TAIR gene report format,,Entry format of The Arabidopsis Information Resource (TAIR) genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1616,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of The Arabidopsis Information Resource (TAIR) genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1617,WormBase gene report format,,Entry format of the WormBase genomes database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1617,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the WormBase genomes database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1618,ZFIN gene report format,,Entry format of the Zebrafish Information Network (ZFIN) genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1618,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the Zebrafish Information Network (ZFIN) genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1619,TIGR gene report format,,Entry format of the TIGR genome database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1619,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format of the TIGR genome database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1620,dbSNP polymorphism report format,,Entry format for the dbSNP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1620,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the dbSNP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1623,OMIM entry format,,Format of an entry from the OMIM database of genotypes and phenotypes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1623,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the OMIM database of genotypes and phenotypes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1624,HGVbase entry format,,Format of a record from the HGVbase database of genotypes and phenotypes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1624,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of a record from the HGVbase database of genotypes and phenotypes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1625,HIVDB entry format,,Format of a record from the HIVDB database of genotypes and phenotypes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1625,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of a record from the HIVDB database of genotypes and phenotypes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1626,KEGG DISEASE entry format,,Format of an entry from the KEGG DISEASE database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1626,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the KEGG DISEASE database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1627,Primer3 primer,,Report format on PCR primers and hybridisation oligos as generated by Whitehead primer3 program.,FALSE,,,http://edamontology.org/format_2061|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1627,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Report format on PCR primers and hybridisation oligos as generated by Whitehead primer3 program.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1628,ABI,,A format of raw sequence read data from an Applied Biosystems sequencing machine.,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,,,,,,,,,,format_1628,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A format of raw sequence read data from an Applied Biosystems sequencing machine.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1629,mira,,Format of MIRA sequence trace information file.,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1629,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of MIRA sequence trace information file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1630,CAF,,"Common Assembly Format (CAF). A sequence assembly format including contigs, base-call qualities, and other metadata.",FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2561,,beta12orEarlier,,,http://www.sanger.ac.uk/resources/software/caf/,,,,,,,,,format_1630,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.sanger.ac.uk/resources/software/caf/,"Common Assembly Format (CAF). A sequence assembly format including contigs, base-call qualities, and other metadata.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1631,exp,,Sequence assembly project file EXP format.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2561,,beta12orEarlier,,,,,,,,,,,,format_1631,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence assembly project file EXP format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1632,SCF,,"Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata.",FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,http://staden.sourceforge.net/manual/formats_unix_2.html,,,,,,,,,format_1632,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://staden.sourceforge.net/manual/formats_unix_2.html,"Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1633,PHD,,PHD sequence trace format to store serialised chromatogram data (reads).,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2330,,beta12orEarlier,,,http://www.bioperl.org/wiki/PHD_sequence_format,,,,,,,,,format_1633,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.bioperl.org/wiki/PHD_sequence_format,PHD sequence trace format to store serialised chromatogram data (reads).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1637,dat,Affymetrix image data file format,Format of Affymetrix data file of raw image data.,FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1637,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of Affymetrix data file of raw image data.,Affymetrix image data file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1638,cel,Affymetrix probe raw data format,Format of Affymetrix data file of information about (raw) expression levels of the individual probes.,FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1638,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of Affymetrix data file of information about (raw) expression levels of the individual probes.,Affymetrix probe raw data format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1639,affymetrix,,"Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) from hierarchical clustering.",FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2172,,beta12orEarlier,,,,,,,,,,,,format_1639,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) from hierarchical clustering.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1640,ArrayExpress entry format,,Entry format for the ArrayExpress microarrays database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1640,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the ArrayExpress microarrays database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1641,affymetrix-exp,Affymetrix experimental conditions data file format,Affymetrix data file format for information about experimental conditions and protocols.,FALSE,,,http://edamontology.org/format_2056|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1641,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Affymetrix data file format for information about experimental conditions and protocols.,Affymetrix experimental conditions data file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1644,CHP,Affymetrix probe normalised data format,Format of Affymetrix data file of information about (normalised) expression levels of the individual probes.,FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1644,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of Affymetrix data file of information about (normalised) expression levels of the individual probes.,Affymetrix probe normalised data format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1645,EMDB entry format,,Format of an entry from the Electron Microscopy DataBase (EMDB).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1645,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the Electron Microscopy DataBase (EMDB).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1647,KEGG PATHWAY entry format,,The format of an entry from the KEGG PATHWAY database of pathway maps for molecular interactions and reaction networks.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1647,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG PATHWAY database of pathway maps for molecular interactions and reaction networks.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1648,MetaCyc entry format,,The format of an entry from the MetaCyc metabolic pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1648,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the MetaCyc metabolic pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1649,HumanCyc entry format,,The format of a report from the HumanCyc metabolic pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1649,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of a report from the HumanCyc metabolic pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1650,INOH entry format,,The format of an entry from the INOH signal transduction pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1650,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the INOH signal transduction pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1651,PATIKA entry format,,The format of an entry from the PATIKA biological pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1651,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the PATIKA biological pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1652,Reactome entry format,,The format of an entry from the reactome biological pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1652,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the reactome biological pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1653,aMAZE entry format,,The format of an entry from the aMAZE biological pathways and molecular interactions database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1653,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the aMAZE biological pathways and molecular interactions database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1654,CPDB entry format,,The format of an entry from the CPDB database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1654,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the CPDB database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1655,Panther Pathways entry format,,The format of an entry from the Panther Pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1655,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the Panther Pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1665,Taverna workflow format,,Format of Taverna workflows.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2032,,beta12orEarlier,,,,,,,,,,,,format_1665,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of Taverna workflows.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1666,BioModel mathematical model format,,"Format of mathematical models from the BioModel database.|Models are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1666,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of mathematical models from the BioModel database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1697,KEGG LIGAND entry format,,The format of an entry from the KEGG LIGAND chemical database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1697,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG LIGAND chemical database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1698,KEGG COMPOUND entry format,,The format of an entry from the KEGG COMPOUND database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1698,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG COMPOUND database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1699,KEGG PLANT entry format,,The format of an entry from the KEGG PLANT database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1699,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG PLANT database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1700,KEGG GLYCAN entry format,,The format of an entry from the KEGG GLYCAN database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1700,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG GLYCAN database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1701,PubChem entry format,,The format of an entry from PubChem.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1701,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from PubChem.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1702,ChemSpider entry format,,The format of an entry from a database of chemical structures and property predictions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1702,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from a database of chemical structures and property predictions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1703,ChEBI entry format,,The format of an entry from Chemical Entities of Biological Interest (ChEBI).|ChEBI includes an ontological classification defining relations between entities or classes of entities.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1703,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from Chemical Entities of Biological Interest (ChEBI).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1704,MSDchem ligand dictionary entry format,,The format of an entry from the MSDchem ligand dictionary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1704,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the MSDchem ligand dictionary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1705,HET group dictionary entry format,,The format of an entry from the HET group dictionary (HET groups from PDB files).,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2030,,beta12orEarlier,,,,,,,,,,,,format_1705,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The format of an entry from the HET group dictionary (HET groups from PDB files).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1706,KEGG DRUG entry format,,The format of an entry from the KEGG DRUG database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1706,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the KEGG DRUG database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1734,PubMed citation,,Format of bibliographic reference as used by the PubMed database.,FALSE,,,http://edamontology.org/format_2848|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1734,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of bibliographic reference as used by the PubMed database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1735,Medline Display Format,,Format for abstracts of scientific articles from the Medline database.|Bibliographic reference information including citation information is included,FALSE,,,http://edamontology.org/format_2848|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1735,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for abstracts of scientific articles from the Medline database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1736,CiteXplore-core,,"CiteXplore 'core' citation format including title, journal, authors and abstract.",FALSE,,,http://edamontology.org/format_2848|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1736,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"CiteXplore 'core' citation format including title, journal, authors and abstract.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1737,CiteXplore-all,,CiteXplore 'all' citation format includes all known details such as Mesh terms and cross-references.,FALSE,,,http://edamontology.org/format_2848|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1737,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CiteXplore 'all' citation format includes all known details such as Mesh terms and cross-references.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1739,pmc,,Article format of the PubMed Central database.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2020,,beta12orEarlier,,,,,,,,,,,,format_1739,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Article format of the PubMed Central database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1740,iHOP format,,The format of iHOP (Information Hyperlinked over Proteins) text-mining result.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2331|http://edamontology.org/format_2021,,beta12orEarlier,,,,,,,,,,,,format_1740,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The format of iHOP (Information Hyperlinked over Proteins) text-mining result.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1741,OSCAR format,,"OSCAR format of annotated chemical text.|OSCAR (Open-Source Chemistry Analysis Routines) software performs chemistry-specific parsing of chemical documents. It attempts to identify chemical names, ontology concepts, and chemical data from a document.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3780|http://edamontology.org/format_2330,http://doi.org/10.1186/1758-2946-3-41,beta12orEarlier,,,,,,,,,,,,format_1741,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OSCAR format of annotated chemical text.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1747,PDB atom record format,,Format of an ATOM record (describing data for an individual atom) from a PDB file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1747,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1476,,,,,Format of an ATOM record (describing data for an individual atom) from a PDB file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/format_1760,CATH chain report format,,"Format of CATH domain classification information for a polypeptide chain.|The report (for example http://www.cathdb.info/chain/1cukA) includes chain identifiers, domain identifiers and CATH codes for domains in a given protein chain.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1760,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of CATH domain classification information for a polypeptide chain.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1761,CATH PDB report format,,"Format of CATH domain classification information for a protein PDB file.|The report (for example http://www.cathdb.info/pdb/1cuk) includes chain identifiers, domain identifiers and CATH codes for domains in a given PDB file.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1761,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of CATH domain classification information for a protein PDB file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1782,NCBI gene report format,,Entry (gene) format of the NCBI database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1782,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry (gene) format of the NCBI database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1808,GeneIlluminator gene report format,,"Report format for biological functions associated with a gene name and its alternative names (synonyms, homonyms), as generated by the GeneIlluminator service.|This includes a gene name and abbreviation of the name which may be in a name space indicating the gene status and relevant organisation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1808,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,Moby:GI_Gene,"Report format for biological functions associated with a gene name and its alternative names (synonyms, homonyms), as generated by the GeneIlluminator service.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1809,BacMap gene card format,,Format of a report on the DNA and protein sequences for a given gene label from a bacterial chromosome maps from the BacMap database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1809,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,Moby:BacMapGeneCard,Format of a report on the DNA and protein sequences for a given gene label from a bacterial chromosome maps from the BacMap database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1810,ColiCard report format,,"Format of a report on Escherichia coli genes, proteins and molecules from the CyberCell Database (CCDB).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1810,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,"Format of a report on Escherichia coli genes, proteins and molecules from the CyberCell Database (CCDB).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1861,PlasMapper TextMap,,Map of a plasmid (circular DNA) in PlasMapper TextMap format.,FALSE,,,http://edamontology.org/format_2060|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1861,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Map of a plasmid (circular DNA) in PlasMapper TextMap format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1910,newick,nh,Phylogenetic tree Newick (text) format.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1910,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree Newick (text) format.,nh,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1911,TreeCon format,,Phylogenetic tree TreeCon (text) format.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1911,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree TreeCon (text) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1912,Nexus format,,Phylogenetic tree Nexus (text) format.,FALSE,,,http://edamontology.org/format_2556|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1912,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree Nexus (text) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1915,Format,Data model|Exchange format|Data format|File format,"A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere.|The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.",FALSE,,,http://www.w3.org/2002/07/owl#Thing,,beta12orEarlier,,,,,,,,,,,,format_1915,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data model,,,"A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere.",Exchange format|Data format,File format,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_1918,Atomic data format,,Data format for an individual atom.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1918,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1475,,,,,Data format for an individual atom.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/format_1919,Sequence record format,,Data format for a molecular sequence record.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_1919,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a molecular sequence record.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_1920,Sequence feature annotation format,,Data format for molecular sequence feature information.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_1920,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for molecular sequence feature information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_1921,Alignment format,,Data format for molecular sequence alignment information.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_1921,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for molecular sequence alignment information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_1923,acedb,,ACEDB sequence format.,FALSE,,,http://edamontology.org/format_2551,,beta12orEarlier,,,,,,,,,,,,format_1923,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ACEDB sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1924,clustal sequence format,,Clustalw output format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1924,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1982,,,,,Clustalw output format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1925,codata,,Codata entry format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1925,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Codata entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1926,dbid,,Fasta format variant with database name before ID.,FALSE,,,http://edamontology.org/format_2200,,beta12orEarlier,,,,,,,,,,,,format_1926,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Fasta format variant with database name before ID.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1927,EMBL format,EMBL|EMBL sequence format,EMBL entry format.,FALSE,,,http://edamontology.org/format_2181|http://edamontology.org/format_2206,,beta12orEarlier,,,,,,,,,,,,format_1927,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBL entry format.,EMBL|EMBL sequence format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1928,Staden experiment format,,Staden experiment file format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1928,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Staden experiment file format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1929,FASTA,FASTA sequence format|FASTA format,FASTA format including NCBI-style IDs.,FALSE,,,http://edamontology.org/format_2200|http://edamontology.org/format_2554,,beta12orEarlier,,,,,,,,,,,,format_1929,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTA format including NCBI-style IDs.,FASTA sequence format|FASTA format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1930,FASTQ,FASTAQ|fq,FASTQ short read format ignoring quality scores.,FALSE,,,http://edamontology.org/format_2182,,beta12orEarlier,,,,,,,,,,,,format_1930,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ short read format ignoring quality scores.,FASTAQ|fq,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1931,FASTQ-illumina,,FASTQ Illumina 1.3 short read format.,FALSE,,,http://edamontology.org/format_2182,,beta12orEarlier,,,,,,,,,,,,format_1931,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ Illumina 1.3 short read format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1932,FASTQ-sanger,,FASTQ short read format with phred quality.,FALSE,,,http://edamontology.org/format_2182,,beta12orEarlier,,,,,,,,,,,,format_1932,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ short read format with phred quality.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1933,FASTQ-solexa,,FASTQ Solexa/Illumina 1.0 short read format.,FALSE,,,http://edamontology.org/format_2182,,beta12orEarlier,,,,,,,,,,,,format_1933,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ Solexa/Illumina 1.0 short read format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1934,fitch program,,Fitch program format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1934,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Fitch program format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1935,GCG,GCG SSF,GCG sequence file format.| GCG SSF (single sequence file) file format.,FALSE,,,http://edamontology.org/format_3486|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1935,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GCG sequence file format.,GCG SSF,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1936,GenBank format,GenBank,Genbank entry format.,FALSE,,,http://edamontology.org/format_2205|http://edamontology.org/format_2206,,beta12orEarlier,,,,,,,,,,,,format_1936,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Genbank entry format.,GenBank,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1937,genpept,,Genpept protein entry format.|Currently identical to refseqp format,FALSE,,,http://edamontology.org/format_2205,,beta12orEarlier,,,,,,,,,,,,format_1937,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Genpept protein entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1938,GFF2-seq,,GFF feature file format with sequence in the header.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1974,,beta12orEarlier,,,,,,,,,,,,format_1938,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GFF feature file format with sequence in the header.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1939,GFF3-seq,,GFF3 feature file format with sequence.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1975,,beta12orEarlier,,,,,,,,,,,,format_1939,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GFF3 feature file format with sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1940,giFASTA format,,FASTA sequence format including NCBI-style GIs.,FALSE,,,http://edamontology.org/format_2200,,beta12orEarlier,,,,,,,,,,,,format_1940,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTA sequence format including NCBI-style GIs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1941,hennig86,,Hennig86 output sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1941,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Hennig86 output sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1942,ig,,Intelligenetics sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1942,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Intelligenetics sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1943,igstrict,,Intelligenetics sequence format (strict version).,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1943,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Intelligenetics sequence format (strict version).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1944,jackknifer,,Jackknifer interleaved and non-interleaved sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1944,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Jackknifer interleaved and non-interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1945,mase format,,Mase program sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1945,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mase program sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1946,mega-seq,,Mega interleaved and non-interleaved sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1946,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mega interleaved and non-interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1947,GCG MSF,MSF,GCG MSF (multiple sequence file) file format.,FALSE,,,http://edamontology.org/format_3486,,beta12orEarlier,,,,,,,,,,,,format_1947,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GCG MSF (multiple sequence file) file format.,MSF,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1948,nbrf/pir,nbrf|pir,NBRF/PIR entry sequence format.,FALSE,,,http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1948,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,NBRF/PIR entry sequence format.,nbrf|pir,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1949,nexus-seq,,Nexus/paup interleaved sequence format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1949,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Nexus/paup interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1950,pdbatom,,PDB sequence format (ATOM lines).|pdb format in EMBOSS.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1950,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDB sequence format (ATOM lines).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1951,pdbatomnuc,,PDB nucleotide sequence format (ATOM lines).|pdbnuc format in EMBOSS.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1951,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDB nucleotide sequence format (ATOM lines).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1952,pdbseqresnuc,,PDB nucleotide sequence format (SEQRES lines).|pdbnucseq format in EMBOSS.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1952,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDB nucleotide sequence format (SEQRES lines).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1953,pdbseqres,,PDB sequence format (SEQRES lines).|pdbseq format in EMBOSS.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_1475|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1953,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PDB sequence format (SEQRES lines).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1954,Pearson format,,Plain old FASTA sequence format (unspecified format for IDs).,FALSE,,,http://edamontology.org/format_2200,,beta12orEarlier,,,,,,,,,,,,format_1954,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Plain old FASTA sequence format (unspecified format for IDs).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1955,phylip sequence format,,Phylip interleaved sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1955,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1997,,,,,Phylip interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1956,phylipnon sequence format,,Phylip non-interleaved sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1956,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1998,,,,,Phylip non-interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1957,raw,,Raw sequence format with no non-sequence characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1957,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw sequence format with no non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1958,refseqp,,Refseq protein entry sequence format.|Currently identical to genpept format,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1958,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Refseq protein entry sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1959,selex sequence format,,Selex sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1959,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2000,,,,,Selex sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1960,Staden format,,Staden suite sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,http://www.compbio.ox.ac.uk/bioinformatics_faq/format_examples.shtml#staden|http://www.bio.net/bionet/mm/bio-soft/1991-October/003063.html,,,,,,,,,format_1960,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.compbio.ox.ac.uk/bioinformatics_faq/format_examples.shtml#staden|http://www.bio.net/bionet/mm/bio-soft/1991-October/003063.html,Staden suite sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1961,Stockholm format,,Stockholm multiple sequence alignment format (used by Pfam and Rfam).,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,http://en.wikipedia.org/wiki/Stockholm_format,,,,,,,,,format_1961,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://en.wikipedia.org/wiki/Stockholm_format,Stockholm multiple sequence alignment format (used by Pfam and Rfam).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1962,strider format,,DNA strider output sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1962,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA strider output sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1963,UniProtKB format,SwissProt format|UniProt format,UniProtKB entry sequence format.,FALSE,,,http://edamontology.org/format_2187,,beta12orEarlier,,,,,,,,,,,,format_1963,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UniProtKB entry sequence format.,SwissProt format|UniProt format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1964,plain text format (unformatted),,Plain text sequence format (essentially unformatted).,FALSE,,,http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1964,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Plain text sequence format (essentially unformatted).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1965,treecon sequence format,,Treecon output sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1965,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2005,,,,,Treecon output sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1966,ASN.1 sequence format,,NCBI ASN.1-based sequence format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1966,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,NCBI ASN.1-based sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1967,DAS format,das sequence format,DAS sequence (XML) format (any type).,FALSE,,,http://edamontology.org/format_2552|http://edamontology.org/format_2332,,beta12orEarlier,,,,,,,,,,,,format_1967,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DAS sequence (XML) format (any type).,das sequence format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1968,dasdna,,DAS sequence (XML) format (nucleotide-only).|The use of this format is deprecated.,FALSE,,,http://edamontology.org/format_2552|http://edamontology.org/format_2332,,beta12orEarlier,,,,,,,,,,,,format_1968,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DAS sequence (XML) format (nucleotide-only).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1969,debug-seq,,EMBOSS debugging trace sequence format of full internal data content.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1969,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS debugging trace sequence format of full internal data content.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1970,jackknifernon,,Jackknifer output sequence non-interleaved format.,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1970,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Jackknifer output sequence non-interleaved format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1971,meganon sequence format,,Mega non-interleaved output sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1971,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1992,,,,,Mega non-interleaved output sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1972,NCBI format,,NCBI FASTA sequence format with NCBI-style IDs.|There are several variants of this.,FALSE,,,http://edamontology.org/format_2200,,beta12orEarlier,,,,,,,,,,,,format_1972,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,NCBI FASTA sequence format with NCBI-style IDs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1973,nexusnon,,Nexus/paup non-interleaved sequence format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1973,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Nexus/paup non-interleaved sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1974,GFF2,,General Feature Format (GFF) of sequence features.,FALSE,,,http://edamontology.org/format_2305,,beta12orEarlier,,,http://www.sanger.ac.uk/resources/software/gff/spec.html,,,,,,,,,format_1974,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.sanger.ac.uk/resources/software/gff/spec.html,General Feature Format (GFF) of sequence features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1975,GFF3,,Generic Feature Format version 3 (GFF3) of sequence features.,FALSE,,,http://edamontology.org/format_2305,,beta12orEarlier,,,https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md,,,,,,,,,format_1975,,,http://www.sequenceontology.org/,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md,Generic Feature Format version 3 (GFF3) of sequence features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1976,pir,,PIR feature format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1976,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PIR feature format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_1948,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/format_1977,swiss feature,,Swiss-Prot feature format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1977,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1963,,,,,Swiss-Prot feature format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1978,DASGFF,DASGFF feature|das feature,DAS GFF (XML) feature format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2553,,beta12orEarlier,,,,,,,,,,,,format_1978,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DAS GFF (XML) feature format.,DASGFF feature|das feature,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1979,debug-feat,,EMBOSS debugging trace feature format of full internal data content.,FALSE,,,http://edamontology.org/format_1920|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1979,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS debugging trace feature format of full internal data content.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1980,EMBL feature,,EMBL feature format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1980,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1927,,,,,EMBL feature format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1981,GenBank feature,,Genbank feature format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1981,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1936,,,,,Genbank feature format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1982,ClustalW format,clustal,ClustalW format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1982,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ClustalW format for (aligned) sequences.,clustal,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1983,debug,,EMBOSS alignment format for debugging trace of full internal data content.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1983,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS alignment format for debugging trace of full internal data content.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1984,FASTA-aln,,Fasta format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2200|http://edamontology.org/format_2554,,beta12orEarlier,,,,,,,,,,,,format_1984,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Fasta format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1985,markx0,,Pearson MARKX0 alignment format.,FALSE,,,http://edamontology.org/format_2922,,beta12orEarlier,,,,,,,,,,,,format_1985,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pearson MARKX0 alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1986,markx1,,Pearson MARKX1 alignment format.,FALSE,,,http://edamontology.org/format_2922,,beta12orEarlier,,,,,,,,,,,,format_1986,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pearson MARKX1 alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1987,markx10,,Pearson MARKX10 alignment format.,FALSE,,,http://edamontology.org/format_2922,,beta12orEarlier,,,,,,,,,,,,format_1987,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pearson MARKX10 alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1988,markx2,,Pearson MARKX2 alignment format.,FALSE,,,http://edamontology.org/format_2922,,beta12orEarlier,,,,,,,,,,,,format_1988,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pearson MARKX2 alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1989,markx3,,Pearson MARKX3 alignment format.,FALSE,,,http://edamontology.org/format_2922,,beta12orEarlier,,,,,,,,,,,,format_1989,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pearson MARKX3 alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1990,match,,Alignment format for start and end of matches between sequence pairs.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1990,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment format for start and end of matches between sequence pairs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1991,mega,,Mega format for (typically aligned) sequences.,FALSE,,,http://edamontology.org/format_2923,,beta12orEarlier,,,,,,,,,,,,format_1991,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mega format for (typically aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1992,meganon,,Mega non-interleaved format for (typically aligned) sequences.,FALSE,,,http://edamontology.org/format_2923,,beta12orEarlier,,,,,,,,,,,,format_1992,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mega non-interleaved format for (typically aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1993,msf alignment format,,MSF format for (aligned) sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1993,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1947,,,,,MSF format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1994,nexus alignment format,,Nexus/paup format for (aligned) sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1994,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1949,,,,,Nexus/paup format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1995,nexusnon alignment format,,Nexus/paup non-interleaved format for (aligned) sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_1995,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1973,,,,,Nexus/paup non-interleaved format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_1996,pair,,EMBOSS simple sequence pair alignment format.,FALSE,,,http://edamontology.org/format_2554,,beta12orEarlier,,,,,,,,,,,,format_1996,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS simple sequence pair alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1997,PHYLIP format,ph|PHYLIP interleaved format|phy,Phylip format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2924,,beta12orEarlier,,,http://www.bioperl.org/wiki/PHYLIP_multiple_alignment_format,,,,,,,,,format_1997,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylip format for (aligned) sequences.,ph|PHYLIP interleaved format|phy,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1998,phylipnon,PHYLIP sequential format,Phylip non-interleaved format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2924,,beta12orEarlier,,,http://www.bioperl.org/wiki/PHYLIP_multiple_alignment_format,,,,,,,,,format_1998,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylip non-interleaved format for (aligned) sequences.,PHYLIP sequential format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_1999,scores format,,Alignment format for score values for pairs of sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_1999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alignment format for score values for pairs of sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2000,selex,,SELEX format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SELEX format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2001,EMBOSS simple format,,EMBOSS simple multiple alignment format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS simple multiple alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2002,srs format,,Simple multiple sequence (alignment) format for SRS.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Simple multiple sequence (alignment) format for SRS.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2003,srspair,,Simple sequence pair (alignment) format for SRS.,FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Simple sequence pair (alignment) format for SRS.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2004,T-Coffee format,,T-Coffee program alignment format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,T-Coffee program alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2005,TreeCon-seq,,Treecon format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Treecon format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2006,Phylogenetic tree format,,Data format for a phylogenetic tree.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2013,Biological pathway or network format,,Data format for a biological pathway or network.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2013,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a biological pathway or network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2014,Sequence-profile alignment format,,Data format for a sequence-profile alignment.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2014,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a sequence-profile alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2015,Sequence-profile alignment (HMM) format,,Data format for a sequence-HMM profile alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2015,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2014,,,,,Data format for a sequence-HMM profile alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2017,Amino acid index format,,Data format for an amino acid index.,FALSE,,,http://edamontology.org/format_3033,,beta12orEarlier,,,,,,,,,,,,format_2017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for an amino acid index.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2020,Article format,Literature format,Data format for a full-text scientific article.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2020,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a full-text scientific article.,Literature format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2021,Text mining report format,,Data format of a report from text mining.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2021,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format of a report from text mining.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2027,Enzyme kinetics report format,,Data format for reports on enzyme kinetics.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for reports on enzyme kinetics.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2030,Small molecule report format,Chemical compound annotation format,Format of a report on a chemical compound.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on a chemical compound.,Chemical compound annotation format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2031,Gene annotation format,Gene features format,"Format of a report on a particular locus, gene, gene system or groups of genes.",FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2031,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of a report on a particular locus, gene, gene system or groups of genes.",Gene features format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2032,Workflow format,,Format of a workflow.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2032,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a workflow.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2033,Tertiary structure format,,Data format for a molecular tertiary structure.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a molecular tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2034,Biological model format,,Data format for a biological model.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2034,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2013,,,,,Data format for a biological model.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/format_2035,Chemical formula format,,Text format of a chemical formula.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text format of a chemical formula.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2036,Phylogenetic character data format,,Format of raw (unplotted) phylogenetic data.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2036,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of raw (unplotted) phylogenetic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2037,Phylogenetic continuous quantitative character format,,Format of phylogenetic continuous quantitative character data.,FALSE,,,http://edamontology.org/format_2036,,beta12orEarlier,,,,,,,,,,,,format_2037,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of phylogenetic continuous quantitative character data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2038,Phylogenetic discrete states format,,Format of phylogenetic discrete states data.,FALSE,,,http://edamontology.org/format_2036,,beta12orEarlier,,,,,,,,,,,,format_2038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of phylogenetic discrete states data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2039,Phylogenetic tree report (cliques) format,,Format of phylogenetic cliques data.,FALSE,,,http://edamontology.org/format_2036,,beta12orEarlier,,,,,,,,,,,,format_2039,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of phylogenetic cliques data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2040,Phylogenetic tree report (invariants) format,,Format of phylogenetic invariants data.,FALSE,,,http://edamontology.org/format_2036,,beta12orEarlier,,,,,,,,,,,,format_2040,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of phylogenetic invariants data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2045,Electron microscopy model format,,Annotation format for electron microscopy models.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2045,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2350,,,,,Annotation format for electron microscopy models.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2049,Phylogenetic tree report (tree distances) format,,Format for phylogenetic tree distance data.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2049,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for phylogenetic tree distance data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2051,Polymorphism report format,,Format for sequence polymorphism data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2051,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2921,,,,,Format for sequence polymorphism data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,,,
http://edamontology.org/format_2052,Protein family report format,,Format for reports on a protein family.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2052,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for reports on a protein family.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2054,Protein interaction format,Molecular interaction format,Format for molecular interaction data.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2054,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Molecular interaction format,,,Format for molecular interaction data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2055,Sequence assembly format,,Format for sequence assembly data.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2055,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for sequence assembly data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2056,Microarray experiment data format,,Format for information about a microarray experimental per se (not the data generated from that experiment).,FALSE,,,http://edamontology.org/format_3167,,beta12orEarlier,,,,,,,,,,,,format_2056,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for information about a microarray experimental per se (not the data generated from that experiment).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2057,Sequence trace format,,Format for sequence trace data (i.e. including base call information).,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2057,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for sequence trace data (i.e. including base call information).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2058,Gene expression report format,Gene expression data format,"Format of a file of gene expression data, e.g. a gene expression matrix or profile.",FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2058,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of a file of gene expression data, e.g. a gene expression matrix or profile.",Gene expression data format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2059,Genotype and phenotype annotation format,,Format of a report on genotype / phenotype information.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2059,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2350,,,,,Format of a report on genotype / phenotype information.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2060,Map format,,Format of a map of (typically one) molecular sequence annotated with features.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2060,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a map of (typically one) molecular sequence annotated with features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2061,Nucleic acid features (primers) format,,Format of a report on PCR primers or hybridisation oligos in a nucleic acid sequence.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2061,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on PCR primers or hybridisation oligos in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2062,Protein report format,,Format of a report of general information about a specific protein.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2062,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report of general information about a specific protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2063,Protein report (enzyme) format,,Format of a report of general information about a specific enzyme.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2063,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2350,,,,,Format of a report of general information about a specific enzyme.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2064,3D-1D scoring matrix format,,Format of a matrix of 3D-1D scores (amino acid environment probabilities).,FALSE,,,http://edamontology.org/format_3033,,beta12orEarlier,,,,,,,,,,,,format_2064,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a matrix of 3D-1D scores (amino acid environment probabilities).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2065,Protein structure report (quality evaluation) format,,Format of a report on the quality of a protein three-dimensional model.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on the quality of a protein three-dimensional model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2066,Database hits (sequence) format,,Format of a report on sequence hits and associated data from searching a sequence database.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2066,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on sequence hits and associated data from searching a sequence database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2067,Sequence distance matrix format,,Format of a matrix of genetic distances between molecular sequences.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2067,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a matrix of genetic distances between molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2068,Sequence motif format,,Format of a sequence motif.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a sequence motif.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2069,Sequence profile format,,Format of a sequence profile.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2069,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a sequence profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2072,Hidden Markov model format,,Format of a hidden Markov model.,FALSE,,,http://edamontology.org/format_2069,,beta12orEarlier,,,,,,,,,,,,format_2072,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a hidden Markov model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2074,Dirichlet distribution format,,Data format of a dirichlet distribution.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2074,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format of a dirichlet distribution.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2075,HMM emission and transition counts format,,Data format for the emission and transition counts of a hidden Markov model.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2075,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for the emission and transition counts of a hidden Markov model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2076,RNA secondary structure format,,Format for secondary structure (predicted or real) of an RNA molecule.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2076,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for secondary structure (predicted or real) of an RNA molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2077,Protein secondary structure format,,Format for secondary structure (predicted or real) of a protein molecule.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2077,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for secondary structure (predicted or real) of a protein molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2078,Sequence range format,,Format used to specify range(s) of sequence positions.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used to specify range(s) of sequence positions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2094,pure,,Alphabet for molecular sequence with possible unknown positions but without non-sequence characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2094,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for molecular sequence with possible unknown positions but without non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2095,unpure,,Alphabet for a molecular sequence with possible unknown positions but possibly with non-sequence characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2095,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a molecular sequence with possible unknown positions but possibly with non-sequence characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2096,unambiguous sequence,,Alphabet for a molecular sequence with possible unknown positions but without ambiguity characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2096,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a molecular sequence with possible unknown positions but without ambiguity characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2097,ambiguous,,Alphabet for a molecular sequence with possible unknown positions and possible ambiguity characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a molecular sequence with possible unknown positions and possible ambiguity characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2155,Sequence features (repeats) format,,Format used for map of repeats in molecular (typically nucleotide) sequences.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2155,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for map of repeats in molecular (typically nucleotide) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2158,Nucleic acid features (restriction sites) format,,Format used for report on restriction enzyme recognition sites in nucleotide sequences.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2158,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for report on restriction enzyme recognition sites in nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2159,Gene features (coding region) format,,Format used for report on coding regions in nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2159,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for report on coding regions in nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_2031,,,,,,,,,,,,,1.10,,,,,,,
http://edamontology.org/format_2170,Sequence cluster format,,Format used for clusters of molecular sequences.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2170,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for clusters of molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2171,Sequence cluster format (protein),,Format used for clusters of protein sequences.,FALSE,,,http://edamontology.org/format_2170,,beta12orEarlier,,,,,,,,,,,,format_2171,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for clusters of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2172,Sequence cluster format (nucleic acid),,Format used for clusters of nucleotide sequences.,FALSE,,,http://edamontology.org/format_2170,,beta12orEarlier,,,,,,,,,,,,format_2172,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for clusters of nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2175,Gene cluster format,,Format used for clusters of genes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2175,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2172,,,,,Format used for clusters of genes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/format_2181,EMBL-like (text),,A text format resembling EMBL entry format.|This concept may be used for the many non-standard EMBL-like text formats.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2543,,beta12orEarlier,,,,,,,,,,,,format_2181,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A text format resembling EMBL entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2182,FASTQ-like format (text),,A text format resembling FASTQ short read format.|This concept may be used for non-standard FASTQ short read-like formats.,FALSE,,,http://edamontology.org/format_2545|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A text format resembling FASTQ short read format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2183,EMBLXML,,XML format for EMBL entries.,FALSE,,,http://edamontology.org/format_2204,,beta12orEarlier,,,,,,,,,,,,format_2183,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for EMBL entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2184,cdsxml,,XML format for EMBL entries.,FALSE,,,http://edamontology.org/format_2204,,beta12orEarlier,,,,,,,,,,,,format_2184,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for EMBL entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2185,insdxml,,XML format for EMBL entries.,FALSE,,,http://edamontology.org/format_2204,,beta12orEarlier,,,,,,,,,,,,format_2185,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for EMBL entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2186,geneseq,,Geneseq sequence format.,FALSE,,,http://edamontology.org/format_2181,,beta12orEarlier,,,,,,,,,,,,format_2186,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Geneseq sequence format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2187,UniProt-like (text),,A text sequence format resembling uniprotkb entry format.,FALSE,,,http://edamontology.org/format_2547|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2187,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A text sequence format resembling uniprotkb entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2188,UniProt format,,UniProt entry sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2188,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UniProt entry sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_1963,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/format_2189,ipi,,ipi sequence format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2189,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_1963,,,,,ipi sequence format.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/format_2194,medline,,Abstract format used by MedLine database.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2020,,beta12orEarlier,,,,,,,,,,,,format_2194,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Abstract format used by MedLine database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2195,Ontology format,,Format used for ontologies.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2195,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for ontologies.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2196,OBO format,,A serialisation format conforming to the Open Biomedical Ontologies (OBO) model.,FALSE,,,http://edamontology.org/format_2195,,beta12orEarlier,,,,,,,,,,,,format_2196,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A serialisation format conforming to the Open Biomedical Ontologies (OBO) model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2197,OWL format,,A serialisation format conforming to the Web Ontology Language (OWL) model.,FALSE,,,http://edamontology.org/format_2195|http://edamontology.org/format_2376,,beta12orEarlier,,,,,,,,,,,,format_2197,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A serialisation format conforming to the Web Ontology Language (OWL) model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2200,FASTA-like (text),,A text format resembling FASTA format.|This concept may also be used for the many non-standard FASTA-like formats.,FALSE,,,http://edamontology.org/format_2546|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2200,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A text format resembling FASTA format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2202,Sequence record full format,,"Data format for a molecular sequence record, typically corresponding to a full entry from a molecular sequence database.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2202,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data format for a molecular sequence record, typically corresponding to a full entry from a molecular sequence database.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_1919,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/format_2203,Sequence record lite format,,"Data format for a molecular sequence record 'lite', typically molecular sequence and minimal metadata, such as an identifier of the sequence and/or a comment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2203,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data format for a molecular sequence record 'lite', typically molecular sequence and minimal metadata, such as an identifier of the sequence and/or a comment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_1919,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/format_2204,EMBL format (XML),,An XML format for EMBL entries.|This is a placeholder for other more specific concepts. It should not normally be used for annotation.,FALSE,,,http://edamontology.org/format_2558,,beta12orEarlier,,,,,,,,,,,,format_2204,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An XML format for EMBL entries.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2205,GenBank-like format (text),,A text format resembling GenBank entry (plain text) format.|This concept may be used for the non-standard GenBank-like text formats.,FALSE,,,http://edamontology.org/format_2559|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2205,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A text format resembling GenBank entry (plain text) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2206,Sequence feature table format (text),,Text format for a sequence feature table.,FALSE,,,http://edamontology.org/format_2548,,beta12orEarlier,,,,,,,,,,,,format_2206,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text format for a sequence feature table.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2210,Strain data format,,Format of a report on organism strain data / cell line.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2210,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a report on organism strain data / cell line.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,,,
http://edamontology.org/format_2211,CIP strain data format,,Format for a report of strain data as used for CIP database entries.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2211,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format for a report of strain data as used for CIP database entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2243,phylip property values,,PHYLIP file format for phylogenetic property data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2243,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2036,,,,,PHYLIP file format for phylogenetic property data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2303,STRING entry format (HTML),,Entry format (HTML) for the STRING database of protein interaction.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2303,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format (HTML) for the STRING database of protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2304,STRING entry format (XML),,Entry format (XML) for the STRING database of protein interaction.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2054,,beta12orEarlier,,,,,,,,,,,,format_2304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Entry format (XML) for the STRING database of protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2305,GFF,,GFF feature format (of indeterminate version).,FALSE,,,http://edamontology.org/format_2206|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GFF feature format (of indeterminate version).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2306,GTF,,"Gene Transfer Format (GTF), a restricted version of GFF.",FALSE,,,http://edamontology.org/format_2305,,beta12orEarlier,,,http://mblab.wustl.edu/GTF22.html,,,,,,,,,format_2306,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://mblab.wustl.edu/GTF22.html|http://genome.ucsc.edu/FAQ/FAQformat#format4,"Gene Transfer Format (GTF), a restricted version of GFF.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2310,FASTA-HTML,,FASTA format wrapped in HTML elements.,FALSE,,,http://edamontology.org/format_2331|http://edamontology.org/format_2546,,beta12orEarlier,,,,,,,,,,,,format_2310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTA format wrapped in HTML elements.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2311,EMBL-HTML,,EMBL entry format wrapped in HTML elements.,FALSE,,,http://edamontology.org/format_2331|http://edamontology.org/format_2543,,beta12orEarlier,,,,,,,,,,,,format_2311,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBL entry format wrapped in HTML elements.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2322,BioCyc enzyme report format,,Format of an entry from the BioCyc enzyme database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2322,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the BioCyc enzyme database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2323,ENZYME enzyme report format,,Format of an entry from the Enzyme nomenclature database (ENZYME).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2323,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of an entry from the Enzyme nomenclature database (ENZYME).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2328,PseudoCAP gene report format,,Format of a report on a gene from the PseudoCAP database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2328,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of a report on a gene from the PseudoCAP database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2329,GeneCards gene report format,,Format of a report on a gene from the GeneCards database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2329,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Format of a report on a gene from the GeneCards database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2330,Textual format,Plain text format|txt,"Textual format.|Data in text format can be compressed into binary format, or can be a value of an XML element or attribute. Markup formats are not considered textual (or more precisely, not plain-textual).",FALSE,,,http://edamontology.org/format_1915,,beta12orEarlier,,,,,,,,,,,,format_2330,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Textual format.,,Plain text format|txt,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2331,HTML,Hypertext Markup Language,HTML format.,FALSE,,,http://edamontology.org/format_1915,,beta12orEarlier,,,,,,,,,,,,format_2331,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,HTML format.,Hypertext Markup Language,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2332,XML,eXtensible Markup Language,"eXtensible Markup Language (XML) format.|Data in XML format can be serialised into text, or binary format.",FALSE,,,http://edamontology.org/format_1915,,beta12orEarlier,,,,,xml,,,,,,,format_2332,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/xml|http://filext.com/file-extension/XML,eXtensible Markup Language (XML) format.,eXtensible Markup Language,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/xml,,,,,,,,
http://edamontology.org/format_2333,Binary format,,"Binary format.|Only specific native binary formats are listed under 'Binary format' in EDAM. Generic binary formats - such as any data being zipped, or any XML data being serialised into the Efficient XML Interchange (EXI) format - are not modelled in EDAM. Refer to http://wsio.org/compression_004.",FALSE,,,http://edamontology.org/format_1915,,beta12orEarlier,,,,,,,,,,,,format_2333,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Binary format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2334,URI format,,Typical textual representation of a URI.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2334,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_1047,,,,,Typical textual representation of a URI.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/format_2341,NCI-Nature pathway entry format,,The format of an entry from the NCI-Nature pathways database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2341,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,The format of an entry from the NCI-Nature pathways database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2350,Format (by type of data),Format (typed),"A placeholder concept for visual navigation by dividing data formats by the content of the data that is represented.|This concept exists only to assist EDAM maintenance and navigation in graphical browsers.  It does not add semantic information. The concept branch under 'Format (typed)' provides an alternative organisation of the concepts nested under the other top-level branches ('Binary', 'HTML', 'RDF', 'Text' and 'XML'. All concepts under here are already included under those branches.",FALSE,,,http://edamontology.org/format_1915,,beta12orEarlier,,,,,,,,,,,,format_2350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A placeholder concept for visual navigation by dividing data formats by the content of the data that is represented.,Format (typed),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2352,BioXSD (XML),BioXSD|BioJSON|BioYAML|BioXSD|GTrack|BioXSD format|BioXSD|BioXSD/GTrack|BioXSD data model|BioXSD XML format|BioXSD+XML|BioXSD in XML|BioXSD XML|BioXSD in XML format,"BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.",FALSE,,,http://edamontology.org/format_1919|http://edamontology.org/format_2332|http://edamontology.org/format_2555|http://edamontology.org/format_2571|http://edamontology.org/format_1920,http://doi.org/10.7490/f1000research.1113048.1|http://doi.org/10.1093/bioinformatics/btq391|http://doi.org/10.1186/1471-2105-12-494,beta12orEarlier,,,http://bioxsd.org|http://bioxsd.org/BioXSD-1.1.xsd,http://bioxsd.org/exampleFeatureRecords.html|http://bioxsd.org/accession.xml|http://bioxsd.org/sequenceRecord.xml|http://bioxsd.org/sequenceRecord.xml+json+yaml.xml,,,,,,,,format_2352,,,"Any ontology allowed, none mandatory. Preferrably with URIs but URIs are not mandatory. Non-ontology terms are also allowed as the last resort in case of a lack of suitable ontology.",,,,,,,,,,,,,,,,,,,,,,,"'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioXSD in XML' is the XML format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'.",,,BioXSD|BioJSON|BioYAML|BioXSD|GTrack|BioXSD format|BioXSD|BioXSD/GTrack|BioXSD data model,,http://bioxsd.org|http://bioxsd.org/BioXSD-1.1.xsd,"BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.",BioXSD XML format|BioXSD+XML|BioXSD in XML|BioXSD XML|BioXSD in XML format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2376,RDF format,Resource Description Framework format|Resource Description Framework|RDF,A serialisation format conforming to the Resource Description Framework (RDF) model.,FALSE,,,http://edamontology.org/format_3748|http://edamontology.org/format_2195|http://edamontology.org/format_1915,,beta12orEarlier,,,,,,,,,,,,format_2376,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://en.wikipedia.org/wiki/Resource_Description_Framework,A serialisation format conforming to the Resource Description Framework (RDF) model.,Resource Description Framework format,,Resource Description Framework|RDF,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2532,GenBank-HTML,,Genbank entry format wrapped in HTML elements.,FALSE,,,http://edamontology.org/format_2331|http://edamontology.org/format_2559,,beta12orEarlier,,,,,,,,,,,,format_2532,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Genbank entry format wrapped in HTML elements.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2542,Protein features (domains) format,,Format of a report on protein features (domain composition).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2542,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2350,,,,,Format of a report on protein features (domain composition).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2543,EMBL-like format,,A format resembling EMBL entry (plain text) format.|This concept may be used for the many non-standard EMBL-like formats.,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2543,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A format resembling EMBL entry (plain text) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2545,FASTQ-like format,,A format resembling FASTQ short read format.|This concept may be used for non-standard FASTQ short read-like formats.,FALSE,,,http://edamontology.org/format_2057,,beta12orEarlier,,,,,,,,,,,,format_2545,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A format resembling FASTQ short read format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2546,FASTA-like,,A format resembling FASTA format.|This concept may be used for the many non-standard FASTA-like formats.,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2546,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A format resembling FASTA format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2547,uniprotkb-like format,,A sequence format resembling uniprotkb entry format.,FALSE,,,http://edamontology.org/format_1919|http://edamontology.org/format_2548,,beta12orEarlier,,,,,,,,,,,,format_2547,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A sequence format resembling uniprotkb entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2548,Sequence feature table format,,Format for a sequence feature table.,FALSE,,,http://edamontology.org/format_1920,,beta12orEarlier,,,,,,,,,,,,format_2548,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for a sequence feature table.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2549,OBO,,OBO ontology text format.,FALSE,,,http://edamontology.org/format_2196|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2549,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBO ontology text format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2550,OBO-XML,,OBO ontology XML format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2196,,beta12orEarlier,,,,,,,,,,,,format_2550,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBO ontology XML format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2551,Sequence record format (text),,Data format for a molecular sequence record.,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2551,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a molecular sequence record.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2552,Sequence record format (XML),,Data format for a molecular sequence record.,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2552,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a molecular sequence record.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2553,Sequence feature table format (XML),,XML format for a sequence feature table.,FALSE,,,http://edamontology.org/format_2548,,beta12orEarlier,,,,,,,,,,,,format_2553,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for a sequence feature table.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2554,Alignment format (text),,Text format for molecular sequence alignment information.,FALSE,,,http://edamontology.org/format_1921,,beta12orEarlier,,,,,,,,,,,,format_2554,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text format for molecular sequence alignment information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2555,Alignment format (XML),,XML format for molecular sequence alignment information.,FALSE,,,http://edamontology.org/format_1921,,beta12orEarlier,,,,,,,,,,,,format_2555,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for molecular sequence alignment information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2556,Phylogenetic tree format (text),,Text format for a phylogenetic tree.,FALSE,,,http://edamontology.org/format_2006,,beta12orEarlier,,,,,,,,,,,,format_2556,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text format for a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2557,Phylogenetic tree format (XML),,XML format for a phylogenetic tree.,FALSE,,,http://edamontology.org/format_2006,,beta12orEarlier,,,,,,,,,,,,format_2557,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2558,EMBL-like (XML),,An XML format resembling EMBL entry format.|This concept may be used for the any non-standard EMBL-like XML formats.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2543,,beta12orEarlier,,,,,,,,,,,,format_2558,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An XML format resembling EMBL entry format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2559,GenBank-like format,,A format resembling GenBank entry (plain text) format.|This concept may be used for the non-standard GenBank-like formats.,FALSE,,,http://edamontology.org/format_1919,,beta12orEarlier,,,,,,,,,,,,format_2559,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A format resembling GenBank entry (plain text) format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2560,STRING entry format,,Entry format for the STRING database of protein interaction.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2560,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/format_2331,,,,,Entry format for the STRING database of protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/format_2561,Sequence assembly format (text),,Text format for sequence assembly data.,FALSE,,,http://edamontology.org/format_2055,,beta12orEarlier,,,,,,,,,,,,format_2561,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text format for sequence assembly data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2562,Amino acid identifier format,,Text format (representation) of amino acid residues.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,format_2562,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_0994,,,,,Text format (representation) of amino acid residues.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/format_2566,completely unambiguous,,Alphabet for a molecular sequence without any unknown positions or ambiguity characters.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2566,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alphabet for a molecular sequence without any unknown positions or ambiguity characters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2567,completely unambiguous pure,,"Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.",FALSE,,,http://edamontology.org/format_2566|http://edamontology.org/format_2094,,beta12orEarlier,,,,,,,,,,,,format_2567,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2568,completely unambiguous pure nucleotide,,"Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .",FALSE,,,http://edamontology.org/format_2567|http://edamontology.org/format_1207,,beta12orEarlier,,,,,,,,,,,,format_2568,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2569,completely unambiguous pure dna,,"Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.",FALSE,,,http://edamontology.org/format_2567|http://edamontology.org/format_1212,,beta12orEarlier,,,,,,,,,,,,format_2569,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2570,completely unambiguous pure rna sequence,,"Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.",FALSE,,,http://edamontology.org/format_2567|http://edamontology.org/format_1213,,beta12orEarlier,,,,,,,,,,,,format_2570,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2571,Raw sequence format,,Format of a raw molecular sequence (i.e. the alphabet used).,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2571,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a raw molecular sequence (i.e. the alphabet used).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2572,BAM,,"BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.",FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,http://samtools.sourceforge.net/SAM-1.3.pdf,,,,,,,,,format_2572,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://samtools.sourceforge.net/SAM-1.3.pdf,"BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2573,SAM,,"Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.|The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project.",FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2057|http://edamontology.org/format_2330,,beta12orEarlier,,,http://samtools.sourceforge.net/SAM-1.3.pdf,,,,,,,,,format_2573,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://samtools.sourceforge.net/SAM-1.3.pdf,Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2585,SBML,,"Systems Biology Markup Language (SBML), the standard XML format for models of biological processes such as for example metabolism, cell signaling, and gene regulation.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2013,,beta12orEarlier,,,http://sbml.org,,,,,,,,,format_2585,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://sbml.org,"Systems Biology Markup Language (SBML), the standard XML format for models of biological processes such as for example metabolism, cell signaling, and gene regulation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2607,completely unambiguous pure protein,,"Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.",FALSE,,,http://edamontology.org/format_2567|http://edamontology.org/format_1208,,beta12orEarlier,,,,,,,,,,,,format_2607,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2848,Bibliographic reference format,,Format of a bibliographic reference.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2848,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a bibliographic reference.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2919,Sequence annotation track format,,Format of a sequence annotation track.,FALSE,,,http://edamontology.org/format_1920,,beta12orEarlier,,,,,,,,,,,,format_2919,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a sequence annotation track.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2920,Alignment format (pair only),,Data format for molecular sequence alignment information that can hold sequence alignment(s) of only 2 sequences.,FALSE,,,http://edamontology.org/format_1921,,beta12orEarlier,,,,,,,,,,,,format_2920,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for molecular sequence alignment information that can hold sequence alignment(s) of only 2 sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2921,Sequence variation annotation format,,Format of sequence variation annotation.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_2921,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of sequence variation annotation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_2922,markx0 variant,,Some variant of Pearson MARKX alignment format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2922,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some variant of Pearson MARKX alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2923,mega variant,,Some variant of Mega format for (typically aligned) sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2923,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some variant of Mega format for (typically aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_2924,Phylip format variant,,Some variant of Phylip format for (aligned) sequences.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,,,,,,,,,,format_2924,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some variant of Phylip format for (aligned) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3000,AB1,,"AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence.|AB1 uses the generic binary Applied Biosystems, Inc. Format (ABIF).",FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,,,,,,,,,,format_3000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3001,ACE,,"ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards).",FALSE,,,http://edamontology.org/format_2055|http://edamontology.org/format_2330,,beta12orEarlier,,,http://bozeman.mbt.washington.edu/consed/distributions/README.14.0.txt,,,,,,,,,format_3001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://bozeman.mbt.washington.edu/consed/distributions/README.14.0.txt,"ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3003,BED,,"Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.|BED detail format includes 2 additional columns (http://genome.ucsc.edu/FAQ/FAQformat#format1.7) and BED 15 includes 3 additional columns for experiment scores (http://genomewiki.ucsc.edu/index.php/Microarray_track).",FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format1,,,,,,,,,format_3003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format1,"Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3004,bigBed,,"bigBed format for large sequence annotation tracks, similar to textual BED format.",FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2333,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format1.5,,,,,,,,,format_3004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format1.5,"bigBed format for large sequence annotation tracks, similar to textual BED format.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3005,WIG,,Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.,FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/goldenPath/help/wiggle.html,,,,,,,,,format_3005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/goldenPath/help/wiggle.html,Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3006,bigWig,,bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.,FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2333,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format6.1,,,,,,,,,format_3006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format6.1,bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3007,PSL,,"PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.",FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format2,,,,,,,,,format_3007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format2,"PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3008,MAF,,"Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.|Typically generated by Multiz and TBA aligners; can be displayed in a genome browser like a sequence annotation track. This should not be confused with MIRA Assembly Format or Mutation Annotation Format.",FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format5,,,,,,,,,format_3008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format5,"Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3009,2bit,,2bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2333,,beta12orEarlier,,,http://jcomeau.freeshell.org/www/genome/2bitformat.html,,,,,,,,,format_3009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob_plain;f=src/inc/twoBit.h;hb=HEAD|http://jcomeau.freeshell.org/www/genome/2bitformat.html,2bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3010,.nib,,.nib (nibble) binary format of a nucleotide sequence using 4 bits per nucleotide (including unknown) and its lower-case 'masking'.,FALSE,,,http://edamontology.org/format_2571|http://edamontology.org/format_2333,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format8,,,,,,,,,format_3010,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format8,.nib (nibble) binary format of a nucleotide sequence using 4 bits per nucleotide (including unknown) and its lower-case 'masking'.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3011,genePred,,genePred table format for gene prediction tracks.|genePred format has 3 main variations (http://genome.ucsc.edu/FAQ/FAQformat#format9 http://www.broadinstitute.org/software/igv/genePred). They reflect UCSC Browser DB tables.,FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format9,,,,,,,,,format_3011,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format9,genePred table format for gene prediction tracks.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3012,pgSnp,,"Personal Genome SNP (pgSnp) format for sequence variation tracks (indels and polymorphisms), supported by the UCSC Genome Browser.",FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/FAQ/FAQformat#format10,,,,,,,,,format_3012,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format10,"Personal Genome SNP (pgSnp) format for sequence variation tracks (indels and polymorphisms), supported by the UCSC Genome Browser.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3013,axt,,"axt format of alignments, typically produced from BLASTZ.",FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2330,,beta12orEarlier,,,http://genome.ucsc.edu/goldenPath/help/axt.html,,,,,,,,,format_3013,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/goldenPath/help/axt.html,"axt format of alignments, typically produced from BLASTZ.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3014,LAV,,LAV format of alignments generated by BLASTZ and LASTZ.,FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2330,,beta12orEarlier,,,http://www.bx.psu.edu/miller_lab/dist/lav_format.html,,,,,,,,,format_3014,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.bx.psu.edu/miller_lab/dist/lav_format.html,LAV format of alignments generated by BLASTZ and LASTZ.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3015,Pileup,,Pileup format of alignment of sequences (e.g. sequencing reads) to (a) reference sequence(s). Contains aligned bases per base of the reference sequence(s).,FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2330,,beta12orEarlier,,,http://samtools.sourceforge.net/pileup.shtml,,,,,,,,,format_3015,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://samtools.sourceforge.net/pileup.shtml,Pileup format of alignment of sequences (e.g. sequencing reads) to (a) reference sequence(s). Contains aligned bases per base of the reference sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3016,VCF,,"Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).",FALSE,,,http://edamontology.org/format_2921|http://edamontology.org/format_2330,,beta12orEarlier,,,http://vcftools.sourceforge.net/specs.html,,,,,,,,,format_3016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://vcftools.sourceforge.net/specs.html,"Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3017,SRF,,Sequence Read Format (SRF) of sequence trace data. Supports submission to the NCBI Short Read Archive.,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,http://srf.sourceforge.net/,,,,,,,,,format_3017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://srf.sourceforge.net/,Sequence Read Format (SRF) of sequence trace data. Supports submission to the NCBI Short Read Archive.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3018,ZTR,,ZTR format for storing chromatogram data from DNA sequencing instruments.,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,beta12orEarlier,,,http://staden.sourceforge.net/manual/formats_unix_12.html,,,,,,,,,format_3018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://staden.sourceforge.net/manual/formats_unix_12.html,ZTR format for storing chromatogram data from DNA sequencing instruments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3019,GVF,,Genome Variation Format (GVF). A GFF3-compatible format with defined header and attribute tags for sequence variation.,FALSE,,,http://edamontology.org/format_2921|http://edamontology.org/format_1975,,beta12orEarlier,,,http://sequenceontology.org/gvf.html,,,,,,,,,format_3019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://sequenceontology.org/gvf.html,Genome Variation Format (GVF). A GFF3-compatible format with defined header and attribute tags for sequence variation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3020,BCF,,"BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).",FALSE,,,http://edamontology.org/format_2921|http://edamontology.org/format_2333,,beta12orEarlier,,,,,,,,,,,,format_3020,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://samtools.sourceforge.net/mpileup.shtml,"BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3033,Matrix format,,Format of a matrix (array) of numerical values.,FALSE,,,http://edamontology.org/format_2350,,beta13,,,,,,,,,,,,format_3033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a matrix (array) of numerical values.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3097,Protein domain classification format,,Format of data concerning the classification of the sequences and/or structures of protein structural domain(s).,FALSE,,,http://edamontology.org/format_2350,,beta13,,,,,,,,,,,,format_3097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of data concerning the classification of the sequences and/or structures of protein structural domain(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3098,Raw SCOP domain classification format,,Format of raw SCOP domain classification data files.|These are the parsable data files provided by SCOP.,FALSE,,,http://edamontology.org/format_3097,,beta13,,,,,,,,,,,,format_3098,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of raw SCOP domain classification data files.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3099,Raw CATH domain classification format,,Format of raw CATH domain classification data files.|These are the parsable data files provided by CATH.,FALSE,,,http://edamontology.org/format_3097,,beta13,,,,,,,,,,,,format_3099,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of raw CATH domain classification data files.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3100,CATH domain report format,,"Format of summary of domain classification information for a CATH domain.|The report (for example http://www.cathdb.info/domain/1cukA01) includes CATH codes for levels in the hierarchy for the domain, level descriptions and relevant data and links.",FALSE,,,http://edamontology.org/format_3097,,beta13,,,,,,,,,,,,format_3100,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of summary of domain classification information for a CATH domain.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3155,SBRML,,"Systems Biology Result Markup Language (SBRML), the standard XML format for simulated or calculated results (e.g. trajectories) of systems biology models.",FALSE,,,http://edamontology.org/format_3166|http://edamontology.org/format_2332,,1.0,,,http://www.comp-sys-bio.org/tiki-index.php?page=SBRML,,,,,,,,,format_3155,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.comp-sys-bio.org/tiki-index.php?page=SBRML,"Systems Biology Result Markup Language (SBRML), the standard XML format for simulated or calculated results (e.g. trajectories) of systems biology models.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3156,BioPAX,,"BioPAX is an exchange format for pathway data, with its data model defined in OWL.",FALSE,,,http://edamontology.org/format_2013,,1.0,,,http://www.biopax.org,,,,,,,,,format_3156,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.biopax.org,"BioPAX is an exchange format for pathway data, with its data model defined in OWL.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3157,EBI Application Result XML,,EBI Application Result XML is a format returned by sequence similarity search Web services at EBI.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2066|http://edamontology.org/format_2920,,1.0,,,http://www.ebi.ac.uk/schema/ApplicationResult.xsd,,,,,,,,,format_3157,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ebi.ac.uk/schema/ApplicationResult.xsd,EBI Application Result XML is a format returned by sequence similarity search Web services at EBI.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3158,PSI MI XML (MIF),MIF,"XML Molecular Interaction Format (MIF), standardised by HUPO PSI MI.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2054,,1.0,,,http://www.psidev.info/mif,,,,,,,,,format_3158,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.psidev.info/mif,"XML Molecular Interaction Format (MIF), standardised by HUPO PSI MI.",MIF,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3159,phyloXML,,"phyloXML is a standardised XML format for phylogenetic trees, networks, and associated data.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2557,,1.0,,,http://www.phyloxml.org,,,,,,,,,format_3159,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.phyloxml.org,"phyloXML is a standardised XML format for phylogenetic trees, networks, and associated data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3160,NeXML,,NeXML is a standardised XML format for rich phyloinformatic data.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2557,,1.0,,,http://www.nexml.org,,,,,,,,,format_3160,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.nexml.org,NeXML is a standardised XML format for rich phyloinformatic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3161,MAGE-ML,,"MAGE-ML XML format for microarray expression data, standardised by MGED (now FGED).",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2058,,1.0,,,http://www.mged.org/Workgroups/MAGE/mage-ml.html,,,,,,,,,format_3161,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.mged.org/Workgroups/MAGE/mage-ml.html,"MAGE-ML XML format for microarray expression data, standardised by MGED (now FGED).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3162,MAGE-TAB,,"MAGE-TAB textual format for microarray expression data, standardised by MGED (now FGED).",FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,1.0,,,http://www.mged.org/mage-tab,,,,,,,,,format_3162,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.mged.org/mage-tab,"MAGE-TAB textual format for microarray expression data, standardised by MGED (now FGED).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3163,GCDML,,"GCDML XML format for genome and metagenome metadata according to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic Standards Consortium (GSC).",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3167,,1.0,,,http://gcdml.gensc.org,,,,,,,,,format_3163,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://gcdml.gensc.org,"GCDML XML format for genome and metagenome metadata according to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic Standards Consortium (GSC).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3164,GTrack,GTrack ecosystem of formats|GTrack|BTrack|GSuite GTrack|BioXSD|GTrack GTrack|GTrack|GSuite|BTrack GTrack|BioXSD/GTrack GTrack|GTrack format,"GTrack is a generic and optimised tabular format for genome or sequence feature tracks. GTrack unifies the power of other track formats (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, customisation, and automation (""machine understandability"").",FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2206|http://edamontology.org/format_2330,http://doi.org/10.1186/1471-2105-12-494,1.0,,,http://www.gtrack.no|https://hyperbrowser.uio.no/test/static/hyperbrowser/gtrack/GTrack_specification.txt|https://hyperbrowser.uio.no/test/static/hyperbrowser/gtrack/GTrack_specification.html,https://hyperbrowser.uio.no/hb/u/hb-superuser/h/gtrack-examples-from-the-specification,,,,,,,,format_3164,,,,,,,,,,,,,,,,,,,,,,,,,,"'GTrack' belongs to the 'BioXSD|GTrack' ecosystem of generic formats, and particular to its subset, the 'GTrack ecosystem' (GTrack, GSuite, BTrack). 'GTrack' is the tabular format for representing features of sequences and genomes.",,,GTrack ecosystem of formats,,http://www.gtrack.no|https://hyperbrowser.uio.no/test/static/hyperbrowser/gtrack/GTrack_specification.txt|https://hyperbrowser.uio.no/test/static/hyperbrowser/gtrack/GTrack_specification.html,"GTrack is a generic and optimised tabular format for genome or sequence feature tracks. GTrack unifies the power of other track formats (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, customisation, and automation (""machine understandability"").",GTrack|BTrack|GSuite GTrack|BioXSD|GTrack GTrack|GTrack|GSuite|BTrack GTrack|BioXSD/GTrack GTrack|GTrack format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3166,Biological pathway or network report format,,Data format for a report of information derived from a biological pathway or network.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_3166,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a report of information derived from a biological pathway or network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3167,Experiment annotation format,,Data format for annotation on a laboratory experiment.,FALSE,,,http://edamontology.org/format_2350,,beta12orEarlier,,,,,,,,,,,,format_3167,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for annotation on a laboratory experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3235,Cytoband format,,Cytoband format for chromosome cytobands.|Reflects a UCSC Browser DB table.,FALSE,,,http://edamontology.org/format_2078|http://edamontology.org/format_2330,,1.2,,,http://www.broadinstitute.org/software/igv/Cytoband,,,,,,,,,format_3235,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.broadinstitute.org/software/igv/Cytoband,Cytoband format for chromosome cytobands.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3239,CopasiML,,"CopasiML, the native format of COPASI.",FALSE,,,http://edamontology.org/format_3166|http://edamontology.org/format_2332|http://edamontology.org/format_2013,,1.2,,,http://www.copasi.org/tiki-index.php?page_ref_id=128,,,,,,,,,format_3239,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.copasi.org/tiki-index.php?page_ref_id=128,"CopasiML, the native format of COPASI.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3240,CellML,,"CellML, the format for mathematical models of biological and other networks.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2013,,1.2,,,http://www.cellml.org,,,,,,,,,format_3240,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.cellml.org|http://www.iana.org/assignments/media-types/application/cellml+xml,"CellML, the format for mathematical models of biological and other networks.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/cellml+xml,,,,,,,,
http://edamontology.org/format_3242,PSI MI TAB (MITAB),,"Tabular Molecular Interaction format (MITAB), standardised by HUPO PSI MI.",FALSE,,,http://edamontology.org/format_2054|http://edamontology.org/format_2330,,1.2,,,ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psimitab/README,,,,,,,,,format_3242,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psimitab/README,"Tabular Molecular Interaction format (MITAB), standardised by HUPO PSI MI.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3243,PSI-PAR,,"Protein affinity format (PSI-PAR), standardised by HUPO PSI MI. It is compatible with PSI MI XML (MIF) and uses the same XML Schema.",FALSE,,,http://edamontology.org/format_3158,,1.2,,,http://www.psidev.info/psi-par,,,,,,,,,format_3243,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.psidev.info/psi-par,"Protein affinity format (PSI-PAR), standardised by HUPO PSI MI. It is compatible with PSI MI XML (MIF) and uses the same XML Schema.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3244,mzML,,"mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.|mzML is the successor and unifier of the mzData format developed by PSI and mzXML developed at the Seattle Proteome Center.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.2,,,http://psidev.info/mzml,,,,,,,,,format_3244,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info/mzml,"mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3245,Mass spectrometry data format,,"Format for mass pectra and derived data, include peptide sequences etc.",FALSE,,,http://edamontology.org/format_2350,,1.2,,,,,,,,,,,,format_3245,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format for mass pectra and derived data, include peptide sequences etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3246,TraML,,"TraML (Transition Markup Language) is the format for mass spectrometry transitions, standardised by HUPO PSI MSS.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.2,,,http://psidev.info/traml,,,,,,,,,format_3246,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info/traml,"TraML (Transition Markup Language) is the format for mass spectrometry transitions, standardised by HUPO PSI MSS.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3247,mzIdentML,,"mzIdentML is the exchange format for peptides and proteins identified from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of proteomics search engines.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.2,,,http://psidev.info/mzidentml,,,,,,,,,format_3247,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info/mzidentml,"mzIdentML is the exchange format for peptides and proteins identified from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of proteomics search engines.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3248,mzQuantML,,"mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.2,,,http://psidev.info/mzquantml,,,,,,,,,format_3248,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info/mzquantml,"mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3249,GelML,,"GelML is the format for describing the process of gel electrophoresis, standardised by HUPO PSI PS.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3167,,1.2,,,http://psidev.info/gelml,,,,,,,,,format_3249,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info/gelml,"GelML is the format for describing the process of gel electrophoresis, standardised by HUPO PSI PS.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3250,spML,,"spML is the format for describing proteomics sample processing, other than using gels, prior to mass spectrometric protein identification, standardised by HUPO PSI PS. It may also be applicable for metabolomics.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3167,,1.2,,,http://psidev.info,,,,,,,,,format_3250,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://psidev.info,"spML is the format for describing proteomics sample processing, other than using gels, prior to mass spectrometric protein identification, standardised by HUPO PSI PS. It may also be applicable for metabolomics.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3252,OWL Functional Syntax,,A human-readable encoding for the Web Ontology Language (OWL).,FALSE,,,http://edamontology.org/format_2197|http://edamontology.org/format_2330,,1.2,,,,,,,,,,,,format_3252,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A human-readable encoding for the Web Ontology Language (OWL).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3253,Manchester OWL Syntax,,A syntax for writing OWL class expressions.|This format was influenced by the OWL Abstract Syntax and the DL style syntax.,FALSE,,,http://edamontology.org/format_2197|http://edamontology.org/format_2330,,1.2,,,,,,,,,,,,format_3253,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A syntax for writing OWL class expressions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3254,KRSS2 Syntax,,"A superset of the ""Description-Logic Knowledge Representation System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort"".|This format is used in Protege 4.",FALSE,,,http://edamontology.org/format_2195|http://edamontology.org/format_2330,,1.2,,,,,,,,,,,,format_3254,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A superset of the ""Description-Logic Knowledge Representation System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort"".",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3255,Turtle,,The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.|The SPARQL Query Language incorporates a very similar syntax.,FALSE,,,http://edamontology.org/format_2376|http://edamontology.org/format_2330,,1.2,,,,,,,,,,,,format_3255,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3256,N-Triples,,"A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.|N-Triples should not be confused with Notation 3 which is a superset of Turtle.",FALSE,,,http://edamontology.org/format_2376|http://edamontology.org/format_2330,,1.2,,,,,,,,,,,,format_3256,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3257,Notation3,N3,"A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.",FALSE,,,http://edamontology.org/format_2376|http://edamontology.org/format_2330,,,,,,,,,,,,,,format_3257,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.",N3,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3261,RDF/XML,,"Resource Description Framework (RDF) XML format.|RDF/XML is a serialisation syntax for OWL DL, but not for OWL Full.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2376,,1.2,,,,,,,,,,,,format_3261,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Resource Description Framework (RDF) XML format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3262,OWL/XML,OWL,OWL ontology XML serialisation format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2197,,1.2,,,,,,,,,,,,format_3262,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OWL ontology XML serialisation format.,,OWL,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3281,A2M,,The A2M format is used as the primary format for multiple alignments of protein or nucleic-acid sequences in the SAM suite of tools. It is a small modification of FASTA format for sequences and is compatible with most tools that read FASTA.,FALSE,,,http://edamontology.org/format_2200|http://edamontology.org/format_2554,,1.3,,,http://compbio.soe.ucsc.edu/a2m-desc.html,,,,,,,,,format_3281,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://compbio.soe.ucsc.edu/a2m-desc.html,The A2M format is used as the primary format for multiple alignments of protein or nucleic-acid sequences in the SAM suite of tools. It is a small modification of FASTA format for sequences and is compatible with most tools that read FASTA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3284,SFF,Standard flowgram format,Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing.,FALSE,,,http://edamontology.org/format_2057|http://edamontology.org/format_2333,,1.3,,,http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff,,,,,,,,,format_3284,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff,Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing.,Standard flowgram format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3285,MAP,Plink MAP,The MAP file describes SNPs and is used by the Plink package.,FALSE,,,http://edamontology.org/format_3288,,1.3,,,http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped,,,,,,,,,format_3285,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The MAP file describes SNPs and is used by the Plink package.,Plink MAP,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3286,PED,Plink PED,The PED file describes individuals and genetic data and is used by the Plink package.,FALSE,,,http://edamontology.org/format_3288,,1.3,,,http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped,,,,,,,,,format_3286,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The PED file describes individuals and genetic data and is used by the Plink package.,Plink PED,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3287,Individual genetic data format,,Data format for a metadata on an individual and their genetic data.,FALSE,,,http://edamontology.org/format_2350,,1.3,,,,,,,,,,,,format_3287,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for a metadata on an individual and their genetic data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3288,PED/MAP,Plink PED/MAP,The PED/MAP file describes data used by the Plink package.,FALSE,,,http://edamontology.org/format_3287|http://edamontology.org/format_2330,,1.3,,,http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped,,,,,,,,,format_3288,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The PED/MAP file describes data used by the Plink package.,Plink PED/MAP,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3309,CT,Connect format|Connectivity Table file format,File format of a CT (Connectivity Table) file from the RNAstructure package.,FALSE,,,http://edamontology.org/format_2076|http://edamontology.org/format_2330,,beta12orEarlier,,,http://rna.urmc.rochester.edu/Text/File_Formats.html|http://www.ibi.vu.nl/programs/k2nwww/static/data_formats.html,,,,,,,,,format_3309,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,File format of a CT (Connectivity Table) file from the RNAstructure package.,Connect format|Connectivity Table file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3310,SS,,XRNA old input style format.,FALSE,,,http://edamontology.org/format_2076|http://edamontology.org/format_2330,,beta12orEarlier,,,http://rna.ucsc.edu/rnacenter/xrna/xrna_faq.html,,,,,,,,,format_3310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XRNA old input style format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3311,RNAML,,RNA Markup Language.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2076|http://edamontology.org/format_1921,,beta12orEarlier,,,http://www-lbit.iro.umontreal.ca/rnaml/,,,,,,,,,format_3311,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA Markup Language.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3312,GDE,,Format for the Genetic Data Environment (GDE).,FALSE,,,http://edamontology.org/format_2551|http://edamontology.org/format_2330,,beta12orEarlier,,,http://home.cc.umanitoba.ca/~psgendb/birchhomedir/local/pkg/gde/doc/GDE2.2_manual.pdf,,,,,,,,,format_3312,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format for the Genetic Data Environment (GDE).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3313,BLC,Block file format,"A multiple alignment in vertical format, as used in the AMPS (Alignment of Multiple Protein Sequences) pacakge.",FALSE,,,http://edamontology.org/format_2554,,1.3,,,http://www.compbio.dundee.ac.uk/manuals/amps/subsubsection3_18_2_5.html#SECTION00018250000000000000,,,,,,,,,format_3313,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A multiple alignment in vertical format, as used in the AMPS (Alignment of Multiple Protein Sequences) pacakge.",Block file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3326,Data index format,,,FALSE,,,http://edamontology.org/format_2350|http://edamontology.org/format_2333,,1.3,,,,,,,,,,,,format_3326,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3327,BAI,,BAM indexing format,FALSE,,,http://edamontology.org/format_3326,,1.3,,,http://samtools.sourceforge.net/SAMv1.pdf,,,,,,,,,format_3327,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BAM indexing format,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3328,HMMER2,,HMMER profile HMM file for HMMER versions 2.x,FALSE,,,http://edamontology.org/format_1370,,1.3,,,ftp://selab.janelia.org/pub/software/hmmer/2.4i/Userguide.pdf,,,,,,,,,format_3328,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,HMMER profile HMM file for HMMER versions 2.x,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3329,HMMER3,,HMMER profile HMM file for HMMER versions 3.x,FALSE,,,http://edamontology.org/format_1370,,1.3,,,ftp://selab.janelia.org/pub/software/hmmer/CURRENT/Userguide.pdf,,,,,,,,,format_3329,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,HMMER profile HMM file for HMMER versions 3.x,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3330,PO,,EMBOSS simple sequence pair alignment format.,FALSE,,,http://edamontology.org/format_2554,,1.3,,,http://sourceforge.net/projects/poamsa/files/latest/download?source=files,,,,,,,,,format_3330,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EMBOSS simple sequence pair alignment format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3331,BLAST XML results format,,XML format as produced by the NCBI Blast package,FALSE,,,http://edamontology.org/format_1333|http://edamontology.org/format_2332,,1.3,,,,,,,,,,,,format_3331,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format as produced by the NCBI Blast package,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3462,CRAM,,Reference-based compression of alignment format,FALSE,,,http://edamontology.org/format_2920|http://edamontology.org/format_2333,,1.7,,,http://www.ebi.ac.uk/ena/software/cram-usage#format_specification http://samtools.github.io/hts-specs/CRAMv2.1.pdf,,,,,,,,,format_3462,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ebi.ac.uk/ena/software/cram-usage#format_specification http://samtools.github.io/hts-specs/CRAMv2.1.pdf,Reference-based compression of alignment format,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3464,JSON,JavaScript Object Notation,"JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured data using key-value pairs.",FALSE,,,http://edamontology.org/format_1915|http://edamontology.org/format_3750,,1.7,,,,,json,,,,,,,format_3464,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://filext.com/file-extension/JSON|https://en.wikipedia.org/wiki/JSON|http://www.iana.org/assignments/media-types/application/json,"JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured data using key-value pairs.",JavaScript Object Notation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/json,,,,,,,,
http://edamontology.org/format_3466,EPS,,Encapsulated PostScript format,FALSE,,,http://edamontology.org/format_3696,,1.7,,,,,,,,,,,,format_3466,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Encapsulated PostScript format,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3467,GIF,,Graphics Interchange Format.,FALSE,,,http://edamontology.org/format_2333,,1.7,,,,,,,,,,,,format_3467,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Graphics Interchange Format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3468,xls,Microsoft Excel format,Microsoft Excel spreadsheet format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3507,,1.7,,,,,,,,,,,,format_3468,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Microsoft Excel spreadsheet format.,Microsoft Excel format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3475,TSV,Tab-separated values,Tabular data represented as tab-separated values in a text file.,FALSE,,,http://edamontology.org/format_3751,,1.7,,,,,tsv|tab,,,,,,,format_3475,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://filext.com/file-extension/TSV|http://www.iana.org/assignments/media-types/text/tab-separated-values,,Tabular data represented as tab-separated values in a text file.,Tab-separated values,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/text/tab-separated-values,,,,,,,,
http://edamontology.org/format_3476,Gene expression data format,,"Format of a file of gene expression data, e.g. a gene expression matrix or profile.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.7,,,,,,,,,,,,format_3476,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of a file of gene expression data, e.g. a gene expression matrix or profile.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/format_2058,,,,,,,,,,,,,1.10,,,,,,,
http://edamontology.org/format_3477,Cytoscape input file format,,Format of the cytoscape input file of gene expression ratios or values are specified over one or more experiments.,FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,1.7,,,,,,,,,,,,format_3477,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of the cytoscape input file of gene expression ratios or values are specified over one or more experiments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3484,ebwt,Bowtie index format,"Bowtie format for indexed reference genome for ""small"" genomes.",FALSE,,,http://edamontology.org/format_3326,,1.7,,,https://github.com/BenLangmead/bowtie/blob/master/MANUAL,,,,,,,,,format_3484,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bowtie format for indexed reference genome for ""small"" genomes.",Bowtie index format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3485,RSF,GCG RSF,"Rich sequence format.|RSF-format files contain one or more sequences that may or may not be related. In addition to the sequence data, each sequence can be annotated with descriptive sequence information (from the GCG manual).",FALSE,,,http://edamontology.org/format_3486,,1.7,,,http://www.molbiol.ox.ac.uk/tutorials/Seqlab_GCG.pdf,,,,,,,,,format_3485,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Rich sequence format.,GCG RSF,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3486,GCG format variant,,Some format based on the GCG format.,FALSE,,,http://edamontology.org/format_2554|http://edamontology.org/format_2551|http://edamontology.org/format_2330,,1.7,,,,,,,,,,,,format_3486,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Some format based on the GCG format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3487,BSML,,Bioinformatics Sequence Markup Language format.,FALSE,,,http://edamontology.org/format_2552|http://edamontology.org/format_2332,,1.7,,,http://rothlab.ucdavis.edu/genhelp/chapter_2_using_sequences.html#_Creating_and_Editing_Single_Sequenc,,,,,,,,,format_3487,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Bioinformatics Sequence Markup Language format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3491,ebwtl,Bowtie long index format,"Bowtie format for indexed reference genome for ""large"" genomes.",FALSE,,,http://edamontology.org/format_3326,,1.7,,,https://github.com/BenLangmead/bowtie/blob/master/MANUAL,,,,,,,,,format_3491,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bowtie format for indexed reference genome for ""large"" genomes.",Bowtie long index format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3499,Ensembl variation file format,,Ensembl standard format for variation data.,FALSE,,,http://edamontology.org/format_2921|http://edamontology.org/format_2330,,1.8,,,,,,,,,,,,format_3499,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ensembl.org/info/website/upload/var.html,Ensembl standard format for variation data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3506,docx,Microsoft Word format|doc,Microsoft Word format.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3507,,1.8,,,,,,,,,,,,format_3506,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Microsoft Word format.,Microsoft Word format|doc,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3507,Document format,,"Format of documents including word processor, spreadsheet and presentation.",FALSE,,,http://edamontology.org/format_2350,,1.8,,,,,,,,,,,,format_3507,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Format of documents including word processor, spreadsheet and presentation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3508,PDF,,Portable Document Format,FALSE,,,http://edamontology.org/format_3507|http://edamontology.org/format_2333,,1.8,,,,,,,,,,,,format_3508,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Portable Document Format,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3547,Image format,,Format used for images and image metadata.,FALSE,,,http://edamontology.org/format_2350,,1.9,,,,,,,,,,,,format_3547,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used for images and image metadata.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3548,DICOM format,,"Medical image format corresponding to the Digital Imaging and Communications in Medicine (DICOM) standard.

",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.9,,,http://dicom.nema.org/,,,,,,,,,format_3548,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Medical image format corresponding to the Digital Imaging and Communications in Medicine (DICOM) standard.

",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3549,nii,NIfTI-1 format,"Medical image and metadata format of the Neuroimaging Informatics Technology Initiative.

",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.9,,,http://nifti.nimh.nih.gov/nifti-1,,,,,,,,,format_3549,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Medical image and metadata format of the Neuroimaging Informatics Technology Initiative.

",NIfTI-1 format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3550,mhd,Metalmage format,Text-based tagged file format for medical images generated using the MetaImage software package.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_3547,,1.9,,,http://www.itk.org/Wiki/ITK/MetaIO/Documentation,,,,,,,,,format_3550,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text-based tagged file format for medical images generated using the MetaImage software package.,Metalmage format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3551,nrrd,,Nearly Raw Rasta Data format designed to support scientific visualisation and image processing involving N-dimensional raster data.,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_3547,,1.9,,,http://teem.sourceforge.net/nrrd/format.html,,,,,,,,,format_3551,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Nearly Raw Rasta Data format designed to support scientific visualisation and image processing involving N-dimensional raster data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3554,R file format,,"File format used for scripts written in the R programming language for execution within the R software environment, typically for statistical computation and graphics.
",FALSE,,,http://edamontology.org/format_2330,,1.9,,,,,,,,,,,,format_3554,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"File format used for scripts written in the R programming language for execution within the R software environment, typically for statistical computation and graphics.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3555,SPSS,,"File format used for scripts for the Statistical Package for the Social Sciences.
",FALSE,,,http://edamontology.org/format_2330,,1.9,,,,,,,,,,,,format_3555,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"File format used for scripts for the Statistical Package for the Social Sciences.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3556,MHTML,MIME  HTML|HTML email message format|MHTML format|HTML email format|MHT|MIME  HTML format|MHT format|MIME multipart message format|MIME multipart|MIME multipart format|MIME multipart message,"MIME  HTML format for Web pages, which can include external resources, including images, Flash animations and so on. ",FALSE,,,http://edamontology.org/format_2331,,1.9,,,https://tools.ietf.org/html/rfc2557,,mhtml|mht|eml,,,,,,,format_3556,,,,,,,,,,,,,,,,,,,,,,,,,,"MHTML is not strictly an HTML format, it is encoded as an HTML email message (although with multipart/related instead of multipart/alternative). It, however, contains the main HTML block as its core, and thus it is for practical reasons incuded in EDAM as a specialisation of 'HTML'.",,,,,http://www.iana.org/assignments/media-types/multipart/related|https://en.wikipedia.org/wiki/MHTML|https://tools.ietf.org/html/rfc2557,"MIME  HTML format for Web pages, which can include external resources, including images, Flash animations and so on. ",MIME  HTML|HTML email message format|MHTML format|HTML email format|MHT|MIME  HTML format|MHT format,,MIME multipart message format|MIME multipart|MIME multipart format|MIME multipart message,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/multipart/related,,,,,,,,
http://edamontology.org/format_3578,IDAT,,Proprietary file format for (raw) BeadArray data used by genomewide profiling platforms from Illumina Inc. This format is output directly from the scanner and stores summary intensities for each probe-type on an array.,FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2333,,1.10,,,,,,,,,,,,format_3578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Proprietary file format for (raw) BeadArray data used by genomewide profiling platforms from Illumina Inc. This format is output directly from the scanner and stores summary intensities for each probe-type on an array.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3579,JPG,,"Joint Picture Group file format for lossy graphics file.
|Sequence of segments with markers. Begins with byte of 0xFF and follows by marker type.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.10,,,http://www.fileformat.info/format/jpeg/egff.htm,,,,,,,,,format_3579,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Joint Picture Group file format for lossy graphics file.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3580,rcc,,"Reporter Code Count-A data file (.csv) output by the Nanostring nCounter Digital Analyzer, which contains gene sample information, probe information and probe counts.",FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,1.10,,,,,,,,,,,,format_3580,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Reporter Code Count-A data file (.csv) output by the Nanostring nCounter Digital Analyzer, which contains gene sample information, probe information and probe counts.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3581,arff,,ARFF (Attribute-Relation File Format) is an ASCII text file format that describes a list of instances sharing a set of attributes.|This file format is for machine learning.,FALSE,,,http://edamontology.org/format_2330,,1.11,,,http://www.cs.waikato.ac.nz/ml/weka/arff.html,,,,,,,,,format_3581,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.cs.waikato.ac.nz/ml/weka/arff.html,ARFF (Attribute-Relation File Format) is an ASCII text file format that describes a list of instances sharing a set of attributes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3582,afg,,AFG is a single text-based file assembly format  that holds read and consensus information together,FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_2561,,1.11,,,http://seqanswers.com/wiki/AFG,,,,,,,,,format_3582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://seqanswers.com/wiki/AFG,AFG is a single text-based file assembly format  that holds read and consensus information together,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3583,bedgraph,,The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data|Holds a tab-delimited chromosome /start /end / datavalue dataset.,FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,1.11,,,http://genome.ucsc.edu/FAQ/FAQformat#format1.8,,,,,,,,,format_3583,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format1.8,The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3584,bedstrict,,"Browser Extensible Data (BED) format of sequence annotation track that strictly does not contain non-standard fields beyond the first 3 columns.  |Galaxy allows BED files to contain non-standard fields beyond the first 3 columns, some other implementations do not.  ",FALSE,,,http://edamontology.org/format_3003,,1.11,,,http://genome.ucsc.edu/FAQ/FAQformat#format1,,,,,,,,,format_3584,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format1,Browser Extensible Data (BED) format of sequence annotation track that strictly does not contain non-standard fields beyond the first 3 columns.  ,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3585,bed6,,"BED file format where each feature is described by chromosome, start, end, name, score, and strand.|Tab delimited data in strict BED format - no non-standard columns allowed; column count forced to 6",FALSE,,,http://edamontology.org/format_3584,,1.11,,,http://bedtools.readthedocs.org/en/latest/content/general-usage.html,,,,,,,,,format_3585,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://bedtools.readthedocs.org/en/latest/content/general-usage.html,"BED file format where each feature is described by chromosome, start, end, name, score, and strand.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3586,bed12,,A BED file where each feature is described by all twelve columns.|Tab delimited data in strict BED format - no non-standard columns allowed; column count forced to 12,FALSE,,,http://edamontology.org/format_3584,,1.11,,,http://bedtools.readthedocs.org/en/latest/content/general-usage.html,,,,,,,,,format_3586,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://bedtools.readthedocs.org/en/latest/content/general-usage.html,A BED file where each feature is described by all twelve columns.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3587,chrominfo,,"Tabular format of chromosome names and sizes used by Galaxy.|Galaxy allows BED files to contain non-standard fields beyond the first 3 columns, some other implementations do not.  ",FALSE,,,http://edamontology.org/format_2330|http://edamontology.org/format_3003,,1.11,,,http://rohsdb.cmb.usc.edu/GBshape/cgi-bin/hgTables?hgsid=43553_onGgm5PMjz4VDV1NySxolABvN978&hgta_doSchemaDb=mm10&hgta_doSchemaTable=chromInfo,,,,,,,,,format_3587,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://rohsdb.cmb.usc.edu/GBshape/cgi-bin/hgTables?hgsid=43553_onGgm5PMjz4VDV1NySxolABvN978&hgta_doSchemaDb=mm10&hgta_doSchemaTable=chromInfo,Tabular format of chromosome names and sizes used by Galaxy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3588,customtrack,,Custom Sequence annotation track format used by Galaxy.|Used for tracks/track views within galaxy.,FALSE,,,http://edamontology.org/format_2919|http://edamontology.org/format_2330,,1.11,,,https://genome.ucsc.edu/goldenPath/help/customTrack.html,,,,,,,,,format_3588,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://genome.ucsc.edu/goldenPath/help/customTrack.html,Custom Sequence annotation track format used by Galaxy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3589,csfasta,,Color space FASTA format sequence variant.|FASTA format extended for color space information.,FALSE,,,http://edamontology.org/format_2200|http://edamontology.org/format_2554,,1.3,,,http://www.clcsupport.com/clcassemblycell/420/index.php?manual=Color_space_file_formats.html,,,,,,,,,format_3589,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.clcsupport.com/clcassemblycell/420/index.php?manual=Color_space_file_formats.html,Color space FASTA format sequence variant.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3590,hdf5,h5,"HDF5 is a generic hierarchical data file format used to store and organize large amounts of data.|An HDF5 file appears to the user as a directed graph. The nodes of this graph are the higher-level HDF5 objects that are exposed by the HDF5 APIs: Groups, Datasets, Named datatypes.",FALSE,,,http://edamontology.org/format_2333,,1.11,,,https://www.hdfgroup.org/HDF5/doc/H5.format.html,,,,,,,,,format_3590,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://www.hdfgroup.org/HDF5/doc/H5.format.html,HDF5 is a generic hierarchical data file format used to store and organize large amounts of data.,h5,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3591,tiff,,"A versatile bitmap format.|The TIFF format is perhaps the most versatile and diverse bitmap format in existence. Its extensible nature and support for numerous data compression schemes allow developers to customize the TIFF format to fit any peculiar data storage needs.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/tiff/egff.htm,,,,,,,,,format_3591,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A versatile bitmap format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3592,bmp,,"Standard bitmap storage format in the Microsoft Windows environment.|Although it is based on Windows internal bitmap data structures, it is supported by many non-Windows and non-PC applications.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/bmp/egff.htm,,,,,,,,,format_3592,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Standard bitmap storage format in the Microsoft Windows environment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3593,im,,"IM is a format used by LabEye and other applications based on the IFUNC image processing library.|IFUNC library reads and writes most uncompressed interchange versions of this format.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://pillow.readthedocs.org/en/latest/handbook/image-file-formats.html,,,,,,,,,format_3593,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IM is a format used by LabEye and other applications based on the IFUNC image processing library.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3594,pcd,,"Photo CD format, which is the highest resolution format for images on a CD.|PCD was developed by Kodak. A PCD file contains five different resolution (ranging from low to high) of a slide or film negative. Due to it PCD is often used by many photographers and graphics professionals for high-end printed applications.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,https://www.coolutils.com/Formats/PCD,,,,,,,,,format_3594,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Photo CD format, which is the highest resolution format for images on a CD.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3595,pcx,,"PCX is an image file format that uses a simple form of run-length encoding. It is lossless.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,https://www.coolutils.com/Formats/PCX,,,,,,,,,format_3595,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"PCX is an image file format that uses a simple form of run-length encoding. It is lossless.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3596,ppm,,"The PPM format is a lowest common denominator color image file format.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://netpbm.sourceforge.net/doc/ppm.html,,,,,,,,,format_3596,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The PPM format is a lowest common denominator color image file format.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3597,psd,,PSD (Photoshop Document) is a proprietary file that allows the user to work with the images’ individual layers even after the file has been saved.,FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/psd/egff.htm,,,,,,,,,format_3597,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PSD (Photoshop Document) is a proprietary file that allows the user to work with the images’ individual layers even after the file has been saved.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3598,xbm,,X BitMap is a plain text binary image format used by the X Window System used for storing cursor and icon bitmaps used in the X GUI. |The XBM format was replaced by XPM for X11 in 1989.,FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/xbm/egff.htm,,,,,,,,,format_3598,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,X BitMap is a plain text binary image format used by the X Window System used for storing cursor and icon bitmaps used in the X GUI. ,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3599,xpm,,"X PixMap (XPM) is an image file format used by the X Window System, it is intended primarily for creating icon pixmaps, and supports transparent pixels.
|Sequence of segments with markers. Begins with byte of 0xFF and follows by marker type.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/xpm/egff.htm,,,,,,,,,format_3599,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"X PixMap (XPM) is an image file format used by the X Window System, it is intended primarily for creating icon pixmaps, and supports transparent pixels.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3600,rgb,,"RGB file format is the native raster graphics file format for Silicon Graphics workstations.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.fileformat.info/format/jpeg/egff.htm,,,,,,,,,format_3600,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"RGB file format is the native raster graphics file format for Silicon Graphics workstations.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3601,pbm,,"The PBM format is a lowest common denominator monochrome file format. It serves as the common language of a large family of bitmap image conversion filters.
",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://netpbm.sourceforge.net/doc/pbm.html,,,,,,,,,format_3601,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The PBM format is a lowest common denominator monochrome file format. It serves as the common language of a large family of bitmap image conversion filters.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3602,pgm,,"The PGM format is a lowest common denominator grayscale file format.
|It is designed to be extremely easy to learn and write programs for.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://netpbm.sourceforge.net/doc/pgm.html,,,,,,,,,format_3602,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The PGM format is a lowest common denominator grayscale file format.
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3603,PNG,png,"PNG is a file format for image compression.
|It iis expected to replace the Graphics Interchange Format (GIF).",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.w3.org/TR/PNG/,,,,,,,,,format_3603,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"PNG is a file format for image compression.
",png,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3604,SVG,Scalable Vector Graphics|svg,Scalable Vector Graphics (SVG) is an XML-based vector image format for two-dimensional graphics with support for interactivity and animation.| The SVG specification is an open standard developed by the World Wide Web Consortium (W3C) since 1999.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3547,,1.11,,,http://www.w3.org/Graphics/SVG/,,,,,,,,,format_3604,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Scalable Vector Graphics (SVG) is an XML-based vector image format for two-dimensional graphics with support for interactivity and animation.,Scalable Vector Graphics|svg,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3605,rast,,Sun Raster is a raster graphics file format used on SunOS by Sun Microsystems| The SVG specification is an open standard developed by the World Wide Web Consortium (W3C) since 1999.,FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,https://en.wikipedia.org/wiki/Sun_Raster,,,,,,,,,format_3605,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sun Raster is a raster graphics file format used on SunOS by Sun Microsystems,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3606,Sequence quality report format (text),,Textual report format for sequence quality for reports from sequencing machines.,FALSE,,,http://edamontology.org/format_2350|http://edamontology.org/format_2330,,1.11,,,,,,,,,,,,format_3606,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Textual report format for sequence quality for reports from sequencing machines.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3607,qual,,FASTQ format subset for Phred sequencing quality score data only (no sequences).|Phred quality scores  are defined as a property which is logarithmically related to the base-calling error probabilities.,FALSE,,,http://edamontology.org/format_3606|http://edamontology.org/format_2182,,1.11,,,http://en.wikipedia.org/wiki/Phred_quality_score,,,,,,,,,format_3607,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ format subset for Phred sequencing quality score data only (no sequences).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3608,qualsolexa,,FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.|Solexa/Illumina 1.0 format can encode a Solexa/Illumina quality score from -5 to 62 using ASCII 59 to 126 (although in raw read data Solexa scores from -5 to 40 only are expected),FALSE,,,http://edamontology.org/format_3607|http://edamontology.org/format_1933,,1.11,,,,,,,,,,,,format_3608,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3609,qualillumina,,"FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.|Starting in Illumina 1.5 and before Illumina 1.8, the Phred scores 0 to 2 have a slightly different meaning. The values 0 and 1 are no longer used and the value 2, encoded by ASCII 66 ""B"", is used also at the end of reads as a Read Segment Quality Control Indicator.",FALSE,,,http://edamontology.org/format_3607|http://edamontology.org/format_1931,,1.11,,,http://en.wikipedia.org/wiki/Phred_quality_score,,,,,,,,,format_3609,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3610,qualsolid,,"FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.|For SOLiD data, the sequence is in color space, except the first position. The quality values are those of the Sanger format.",FALSE,,,http://edamontology.org/format_3607,,1.11,,,http://en.wikipedia.org/wiki/Phred_quality_score,,,,,,,,,format_3610,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3611,qual454,,FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.,FALSE,,,http://edamontology.org/format_3607,,1.11,,,http://en.wikipedia.org/wiki/Phred_quality_score,,,,,,,,,format_3611,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3612,ENCODE peak format,,Human ENCODE peak format.|Format that covers both the broad peak format and narrow peak format from ENCODE.,FALSE,,,http://edamontology.org/format_3585,,1.11,,,http://genome.ucsc.edu/FAQ/FAQformat#format13,,,,,,,,,format_3612,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format13,Human ENCODE peak format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3613,ENCODE narrow peak format,,Human ENCODE narrow peak format.|Format that covers both the broad peak format and narrow peak format from ENCODE.,FALSE,,,http://edamontology.org/format_3612,,1.11,,,http://galaxy.readthedocs.org/en/latest/lib/galaxy.datatypes.html?,,,,,,,,,format_3613,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://galaxy.readthedocs.org/en/latest/lib/galaxy.datatypes.html?,Human ENCODE narrow peak format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3614,ENCODE broad peak format,,Human ENCODE broad peak format.,FALSE,,,http://edamontology.org/format_3612,,1.11,,,http://genome.ucsc.edu/FAQ/FAQformat#format12,,,,,,,,,format_3614,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://genome.ucsc.edu/FAQ/FAQformat#format12,Human ENCODE broad peak format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3615,bgzip,,"Blocked GNU Zip format.|BAM files are compressed using a variant of GZIP (GNU ZIP), into a format called BGZF (Blocked GNU Zip Format).",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.htslib.org/doc/tabix.html,,,,,,,,,format_3615,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Blocked GNU Zip format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3616,tabix,,TAB-delimited genome position file index format.,FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.11,,,http://www.htslib.org/doc/tabix.html,,,,,,,,,format_3616,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.htslib.org/doc/tabix.html,TAB-delimited genome position file index format.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3617,Graph format,,Data format for graph data.,FALSE,,,http://edamontology.org/format_2350,,1.11,,,,,,,,,,,,format_3617,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for graph data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3618,xgmml,,XML-based format used to store graph descriptions within Galaxy.,FALSE,,,http://edamontology.org/format_3617,,1.11,,,http://galaxy.readthedocs.org/en/latest/lib/galaxy.datatypes.html?highlight=datatypes%20graph#module-galaxy.datatypes.graph,,,,,,,,,format_3618,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML-based format used to store graph descriptions within Galaxy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3619,sif,,SIF (simple interaction file) Format - a network/pathway format used for instance in cytoscape.,FALSE,,,http://edamontology.org/format_2013,,1.11,,,http://galaxy.readthedocs.org/en/latest/lib/galaxy.datatypes.html?highlight=datatypes%20graph#module-galaxy.datatypes.graph,,,,,,,,,format_3619,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SIF (simple interaction file) Format - a network/pathway format used for instance in cytoscape.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3620,xlsx,,MS Excel spreadsheet format consisting of a set of XML documents stored in a ZIP-compressed file.,FALSE,,,http://edamontology.org/format_3507|http://edamontology.org/format_2333,,1.11,,,,,,,,,,,,format_3620,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,MS Excel spreadsheet format consisting of a set of XML documents stored in a ZIP-compressed file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3621,SQLite format,,Data format used by the SQLite database.,FALSE,,,http://edamontology.org/format_2333,,1.11,,,https://www.sqlite.org/fileformat2.html,,,,,,,,,format_3621,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format used by the SQLite database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3622,Gemini SQLite format,,Data format used by the SQLite database conformant to the Gemini schema.,FALSE,,,http://edamontology.org/format_2921|http://edamontology.org/format_3621,,1.11,,,https://gemini.readthedocs.org/en/latest/content/quick_start.html,,,,,,,,,format_3622,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format used by the SQLite database conformant to the Gemini schema.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3623,Index format,,Format of a data index of some type.,FALSE,,,http://edamontology.org/format_2350|http://edamontology.org/format_2333,,1.11,,,,,,,,,,,,format_3623,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of a data index of some type.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3624,snpeffdb,,"An index of a genome database, indexed for use by the snpeff tool.",FALSE,,,http://edamontology.org/format_3623,,1.11,,,,,,,,,,,,format_3624,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An index of a genome database, indexed for use by the snpeff tool.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3626,MAT,.mat file format|MATLAB file format|MAT file format,Binary format used by MATLAB files to store workspace variables.,FALSE,,,http://edamontology.org/format_3033,,1.12,,,http://uk.mathworks.com/help/matlab/import_export/mat-file-versions.html,,,,,,,,,format_3626,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Binary format used by MATLAB files to store workspace variables.,.mat file format|MATLAB file format|MAT file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3650,netCDF,ANDI-MS,Format used by netCDF software  library for writing and reading chromatography-MS data files.,FALSE,,,http://edamontology.org/format_3245,,1.12,,,http://www.astm.org/Standards/E1947.htm,,,,,,,,,format_3650,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format used by netCDF software  library for writing and reading chromatography-MS data files.,ANDI-MS,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3651,MGF,,"Mascot Generic Format.  Encodes multiple MS/MS spectra in a single file.|Files includes *m*/*z*, intensity pairs separated by headers; headers can contain a bit more information, including search engine instructions.",FALSE,,,http://edamontology.org/format_3245,,1.12,,,,,,,,,,,,format_3651,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mascot Generic Format.  Encodes multiple MS/MS spectra in a single file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3652,dta,,"Spectral data format file where each spectrum is written to a separate file.|Each file contains one header line for the known or assumed charge and the mass of the precursor peptide ion, calculated from the measured *m*/*z* and the charge. This one line was then followed by all the *m*/*z*, intensity pairs that represent the spectrum.",FALSE,,,http://edamontology.org/format_3245,,1.12,,,,,,,,,,,,format_3652,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Spectral data format file where each spectrum is written to a separate file.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3653,pkl,,Spectral data file similar to dta.|Differ from .dta only in subtleties of the header line format and content and support the added feature of being able to.,FALSE,,,http://edamontology.org/format_3245,,1.12,,,,,,,,,,,,format_3653,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Spectral data file similar to dta.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3654,mzXML,,Common file format for proteomics mass spectrometric data developed at the Seattle Proteome Center/Institute for Systems Biology.,FALSE,,,http://edamontology.org/format_3245,,1.12,,,https://dx.doi.org/10.1038%2Fnbt1031,,,,,,,,,format_3654,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Common file format for proteomics mass spectrometric data developed at the Seattle Proteome Center/Institute for Systems Biology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3655,pepXML,,"Open data format for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans, intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.12,,,http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v118.xsd,,,,,,,,,format_3655,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Open data format for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans, intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3657,GPML,,"Graphical Pathway Markup Language (GPML) is an XML format used
	  for exchanging biological pathways.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2013,,1.12,,,http://www.pathvisio.org/gpml/,,,,,,,,,format_3657,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Graphical Pathway Markup Language (GPML) is an XML format used
	  for exchanging biological pathways.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3665,K-mer countgraph,,A list of k-mers and their occurences in a dataset. Can also be used as an implicit De Bruijn graph.,FALSE,,,http://edamontology.org/format_3617|http://edamontology.org/format_2333,,1.12,,,http://khmer.readthedocs.org/en/v2.0/dev/binary-file-formats.html#countgraph,,oxlicg,,,,,,,format_3665,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://khmer.readthedocs.org/en/v2.0/dev/binary-file-formats.html#countgraph|http://www.iana.org/assignments/media-types/application/vnd.oxli.countgraph,A list of k-mers and their occurences in a dataset. Can also be used as an implicit De Bruijn graph.,,,,,,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/vnd.oxli.countgraph,,,,,,,,
http://edamontology.org/format_3681,mzTab,,mzTab is a tab-delimited format for mass spectrometry-based proteomics and metabolomics results.,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2330,http://doi.org/10.1074/mcp.O113.036681,1.13,,,http://code.google.com/archive/p/mztab,,,,,,,,,format_3681,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://code.google.com/archive/p/mztab,mzTab is a tab-delimited format for mass spectrometry-based proteomics and metabolomics results.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3682,imzML,,"imzML is a data format for mass spectrometry imaging data. NB.: See comment.|Data is recorded in 2 files: '.imzXML' is a metadata XML file based on mzML by HUPO-PSI, and '.ibd' is a binary file containing the mass spectra.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332|http://edamontology.org/format_2333,http://doi.org/10.1016/j.jprot.2012.07.026,1.13,,,http://www.imzml.org/index.php?option=com_content&view=article&id=188&Itemid=63,,imzML|ibd,,,,,,,format_3682,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.imzml.org/index.php?option=com_content&view=article&id=188&Itemid=63,imzML is a data format for mass spectrometry imaging data. NB.: See comment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3683,qcML,,"qcML is an XML format for quality-related data of mass spectrometry and other high-throughput measurements.|The focus of qcML is towards mass spectrometry based proteomics, but the format is suitable for metabolomics and sequencing as well.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332|http://edamontology.org/format_3167,,1.13,,,http://code.google.com/archive/p/qcml,,,,,,,,,format_3683,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://code.google.com/archive/p/qcml,qcML is an XML format for quality-related data of mass spectrometry and other high-throughput measurements.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3684,PRIDE XML,,"PRIDE XML is an XML format for mass spectra, peptide and protein identifications, and metadata about a corresponding measurement, sample, experiment.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332|http://edamontology.org/format_3167,,1.13,,,http://www.ebi.ac.uk/pride/help/archive/submission/pridexml,,,,,,,,,format_3684,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ebi.ac.uk/pride/help/archive/submission/pridexml,"PRIDE XML is an XML format for mass spectra, peptide and protein identifications, and metadata about a corresponding measurement, sample, experiment.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3685,SED-ML,,"Simulation Experiment Description Markup Language (SED-ML) is an XML format for encoding simulation setups, according to the MIASE (Minimum Information About a Simulation Experiment) requirements.",FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3167,http://doi.org/10.1186/1752-0509-5-198|http://doi.org/10.1007/978-3-540-88562-7_15,1.13,,,http://sed-ml.org,,,,,,,,,format_3685,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://sed-ml.org,"Simulation Experiment Description Markup Language (SED-ML) is an XML format for encoding simulation setups, according to the MIASE (Minimum Information About a Simulation Experiment) requirements.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3686,COMBINE OMEX,,"Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating all information necessary for a modeling and simulation project in systems biology.|An OMEX file is a ZIP container that includes a manifest file, listing the content of the archive, an optional metadata file adding information about the archive and its content, and the files describing the model. OMEX is one of the standardised formats within COMBINE (Computational Modeling in Biology Network).",FALSE,,,http://edamontology.org/format_2013|http://edamontology.org/format_3167|http://edamontology.org/format_2333,http://doi.org/10.1186/s12859-014-0369-z,1.13,,,http://co.mbine.org/documents/archive,,,,,,,,,format_3686,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://co.mbine.org/documents/archive,Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating all information necessary for a modeling and simulation project in systems biology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3687,ISA-TAB,ISA-Tab,"The Investigation / Study / Assay (ISA) tab-delimited (TAB) format incorporates metadata from 
experiments employing a combination of technologies.|ISA-TAB is based on MAGE-TAB. Other than tabular, the ISA model can also be represented in RDF, and in JSON (compliable with a set of defined JSON Schemata).",FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_3167|http://edamontology.org/format_2330,,1.13,,,http://www.isa-tools.org/format/specification,,,,,,,,,format_3687,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.isa-tools.org/format/specification,"The Investigation / Study / Assay (ISA) tab-delimited (TAB) format incorporates metadata from 
experiments employing a combination of technologies.",ISA-Tab,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3688,SBtab,,SBtab is a tabular format for biochemical network models.,FALSE,,,http://edamontology.org/format_2013|http://edamontology.org/format_2330,http://arxiv.org/abs/1502.01463,1.13,,,http://sbtab.net,,,,,,,,,format_3688,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://sbtab.net,SBtab is a tabular format for biochemical network models.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3689,BCML,,Biological Connection Markup Language (BCML) is an XML format for biological pathways.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2013,,1.13,,,http://compbiotoolbox.fmach.it/BCMLdocs,,,,,,,,,format_3689,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://compbiotoolbox.fmach.it/BCMLdocs,Biological Connection Markup Language (BCML) is an XML format for biological pathways.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3690,BDML,,Biological Dynamics Markup Language (BDML) is an XML format for quantitative data describing biological dynamics.,FALSE,,,http://edamontology.org/format_2332,http://doi.org/10.1093/bioinformatics/btu767,1.13,,,http://ssbd.qbic.riken.jp/bdml,,,,,,,,,format_3690,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://ssbd.qbic.riken.jp/bdml,Biological Dynamics Markup Language (BDML) is an XML format for quantitative data describing biological dynamics.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3691,BEL,,Biological Expression Language (BEL) is a textual format for representing scientific findings in life sciences in a computable form.,FALSE,,,http://edamontology.org/format_2330,,1.13,,,http://www.openbel.org,,,,,,,,,format_3691,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.openbel.org,Biological Expression Language (BEL) is a textual format for representing scientific findings in life sciences in a computable form.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3692,SBGN-ML,,SBGN-ML is an XML format for Systems Biology Graphical Notation (SBGN) diagrams of biological pathways or networks.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_2013,,1.13,,,http://www.sbgn.org/LibSBGN#The_SBGN-ML_format,,,,,,,,,format_3692,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.sbgn.org/LibSBGN#The_SBGN-ML_format,SBGN-ML is an XML format for Systems Biology Graphical Notation (SBGN) diagrams of biological pathways or networks.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3693,AGP,,"AGP is a tabular format for a sequence assembly (a contig, a scaffold/supercontig, or a chromosome).",FALSE,,,http://edamontology.org/format_2055|http://edamontology.org/format_2330,,1.13,,,http://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification,,,,,,,,,format_3693,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification,"AGP is a tabular format for a sequence assembly (a contig, a scaffold/supercontig, or a chromosome).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3696,PS,PostScript,PostScript format,FALSE,,,http://edamontology.org/format_2330,,1.13,,,,,,,,,,,,format_3696,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PostScript format,PostScript,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3698,SRA format,SRA| SRA archive format, SRA archive format (SRA) is the archive format used for input to the NCBI Sequence Read Archive.,FALSE,,,http://edamontology.org/format_2333,,1.13,,,http://www.ncbi.nlm.nih.gov/books/NBK242622/,,,,,,,,,format_3698,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, SRA archive format (SRA) is the archive format used for input to the NCBI Sequence Read Archive.,SRA| SRA archive format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3699,VDB, SRA native format,VDB ('vertical database') is the native format used for export from the NCBI Sequence Read Archive.,FALSE,,,http://edamontology.org/format_2333,,1.13,,,http://www.ncbi.nlm.nih.gov/books/NBK242622/,,,,,,,,,format_3699,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VDB ('vertical database') is the native format used for export from the NCBI Sequence Read Archive., SRA native format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3700,Tabix index file format,,Index file format used by the samtools package to index TAB-delimited genome position files.,FALSE,,,http://edamontology.org/format_3326,,1.3,,,http://samtools.github.io/hts-specs/tabix.pdf,,,,,,,,,format_3700,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Index file format used by the samtools package to index TAB-delimited genome position files.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3701,Sequin format,,"A five-column, tab-delimited table of feature locations and qualifiers for importing annotation into an existing Sequin submission (an NCBI tool for submitting and updating GenBank entries). ",FALSE,,,http://edamontology.org/format_2206,,1.13,,,,,,,,,,,,format_3701,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A five-column, tab-delimited table of feature locations and qualifiers for importing annotation into an existing Sequin submission (an NCBI tool for submitting and updating GenBank entries). ",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3702,MSF,Magellan storage file format,"Proprietary mass-spectrometry format of Thermo Scientific's ProteomeDiscoverer software.|This format corresponds to an SQLite database, and you can look into the files with e.g. SQLiteStudio3. There are also some readers (http://doi.org/10.1021/pr2005154) and converters (http://doi.org/10.1016/j.jprot.2015.06.015) for this format available, which re-engineered the database schema, but there is no official DB schema specification of Thermo Scientific for the format. ",FALSE,,,http://edamontology.org/format_3245,,1.14,,,,,,,,,,,,format_3702,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Proprietary mass-spectrometry format of Thermo Scientific's ProteomeDiscoverer software.,Magellan storage file format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3706,Biodiversity data format,,Data format for biodiversity data.,FALSE,,,http://edamontology.org/format_2350,,1.14,,,,,,,,,,,,format_3706,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data format for biodiversity data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3708,ABCD format,ABCD,Exchange format of the Access to Biological Collections Data (ABCD) Schema; a standard for the access to and exchange of data about specimens and observations (primary biodiversity data).,FALSE,,,http://edamontology.org/format_3706,,1.14,,,https://github.com/tdwg/abcd,,,,,,,,,format_3708,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Exchange format of the Access to Biological Collections Data (ABCD) Schema; a standard for the access to and exchange of data about specimens and observations (primary biodiversity data).,ABCD,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3709,GCT/Res format,GCT format|Res format,"Tab-delimited text files of GenePattern that contain a column for each sample, a row for each gene, and an expression value for each gene in each sample.",FALSE,,,http://edamontology.org/format_2058|http://edamontology.org/format_2330,,1.14,,,,,,,,,,,,format_3709,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Tab-delimited text files of GenePattern that contain a column for each sample, a row for each gene, and an expression value for each gene in each sample.",GCT format|Res format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3710,WIFF format,wiff,Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex).,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2333,,1.14,,,,,wiff,,,,,,,format_3710,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex).,wiff,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3711,X!Tandem XML,,Output format used by X! series search engines that is based on the XML language BIOML.,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2333|http://edamontology.org/format_2330,,1.14,,,http://www.thegpm.org/docs/X_series_output_form.pdf,,,,,,,,,format_3711,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Output format used by X! series search engines that is based on the XML language BIOML.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3712,Thermo RAW,,Proprietary file format for mass spectrometry data from Thermo Scientific.|Proprietary format for which documentation is not available.,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2333,,1.14,,,,,,,,,,,,format_3712,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Proprietary file format for mass spectrometry data from Thermo Scientific.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3713,Mascot .dat file,,"""Raw"" result file from Mascot database search.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2330,,1.14,,,https://github.com/compomics/mascotdatfile,,,,,,,,,format_3713,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"""Raw"" result file from Mascot database search.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3714,MaxQuant APL peaklist format,MaxQuant APL,Format of peak list files from Andromeda search engine (MaxQuant) that consist of arbitrarily many spectra.,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2330,,1.14,,,http://doi.org/10.1021/pr101065j,,,,,,,,,format_3714,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Format of peak list files from Andromeda search engine (MaxQuant) that consist of arbitrarily many spectra.,MaxQuant APL,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3725,SBOL,,Synthetic Biology Open Language (SBOL) is an XML format for the specification and exchange of biological design information in synthetic biology.|SBOL introduces a standardised format for the electronic exchange of information on the structural and functional aspects of biological designs.,FALSE,,,http://edamontology.org/format_2332,,1.14,,,http://sbolstandard.org/downloads/specification-data-model-2-0/,,,,,,,,,format_3725,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Synthetic Biology Open Language (SBOL) is an XML format for the specification and exchange of biological design information in synthetic biology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3726,PMML,,PMML uses XML to represent mining models. The structure of the models is described by an XML Schema.| One or more mining models can be contained in a PMML document.,FALSE,,,http://edamontology.org/format_2332,,1.14,,,http://dmg.org/pmml/v4-2-1/GeneralStructure.html,,,,,,,,,format_3726,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PMML uses XML to represent mining models. The structure of the models is described by an XML Schema.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3727,OME-TIFF,,"Image file format used by the Open Microscopy Environment (OME).
|An OME-TIFF dataset consists of one or more files in standard TIFF or BigTIFF format, with the file extension .ome.tif or .ome.tiff, and an identical (or in the case of multiple files, nearly identical) string of OME-XML metadata embedded in the ImageDescription tag of each file’s first IFD (Image File Directory). BigTIFF file extensions are also permitted, with the file extension .ome.tf2, .ome.tf8 or .ome.btf, but note these file extensions are an addition to the original specification, and software using an older version of the specification may not be able to handle these file extensions.|OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community.",FALSE,,,http://edamontology.org/format_2333|http://edamontology.org/format_3547,,1.14,,,http://www.openmicroscopy.org/site/support/ome-model/ome-tiff/specification.html,,,,,,,,,format_3727,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Image file format used by the Open Microscopy Environment (OME).
",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3728,LocARNA PP,,"The LocARNA PP format combines sequence or alignment information and (respectively, single or consensus) ensemble probabilities into an PP 2.0 record.|Format for multiple aligned or single sequences together with the probabilistic description of the (consensus) RNA secondary structure ensemble by probabilities of base pairs, base pair stackings, and base pairs and unpaired bases in the loop of base pairs.",FALSE,,,http://edamontology.org/format_2330,,1.14,,,http://www.bioinf.uni-freiburg.de/Software/LocARNA/PP/,,,,,,,,,format_3728,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The LocARNA PP format combines sequence or alignment information and (respectively, single or consensus) ensemble probabilities into an PP 2.0 record.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3729,dbGaP format,,"Input format used by the Database of Genotypes and Phenotypes (dbGaP).|The Database of Genotypes and Phenotypes (dbGaP) is a National Institutes of Health (NIH) sponsored repository charged to archive, curate and distribute information produced by studies investigating the interaction of genotype and phenotype.",FALSE,,,http://edamontology.org/format_2330,,1.14,,,http://www.ncbi.nlm.nih.gov/books/NBK154410/,,,,,,,,,format_3729,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Input format used by the Database of Genotypes and Phenotypes (dbGaP).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3746,BIOM format,BIological Observation Matrix format,"The BIological Observation Matrix (BIOM) is a format for representing biological sample by observation contingency tables in broad areas of comparative omics. The primary use of this format is to represent OTU tables and metagenome tables.|BIOM is a recognised standard for the Earth Microbiome Project, and is a project supported by Genomics Standards Consortium. Supported in QIIME, Mothur, MEGAN, etc.",FALSE,,,http://edamontology.org/format_3706|http://edamontology.org/format_2330,http://doi.org/10.1186/2047-217X-1-7,1.15,,,http://biom-format.org,,biom,,,,,,,format_3746,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The BIological Observation Matrix (BIOM) is a format for representing biological sample by observation contingency tables in broad areas of comparative omics. The primary use of this format is to represent OTU tables and metagenome tables.,BIological Observation Matrix format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3747,protXML,,"A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.|No human-consumable information about this format is available (see http://tools.proteomecenter.org/wiki/index.php?title=Formats:protXML).",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.15,,,http://tools.proteomecenter.org/formats/protXML/protXML_xmlspy_docs.html,,,,,,,,,format_3747,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/MS_1001422,"A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3748,Linked data format,Linked Data format|Semantic Web format,"A linked data format enables publishing structured data as linked data (Linked Data), so that the data can be interlinked and become more useful through semantic queries.",FALSE,,,http://edamontology.org/format_2350,https://www.w3.org/DesignIssues/LinkedData.html|http://doi.org/10.4018/jswis.2009081901,1.15,,,,,,,,,,,,format_3748,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://en.wikipedia.org/wiki/Linked_data,"A linked data format enables publishing structured data as linked data (Linked Data), so that the data can be interlinked and become more useful through semantic queries.",Linked Data format,,Semantic Web format,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3749,JSON-LD,JavaScript Object Notation for Linked Data,"JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.",FALSE,,,http://edamontology.org/format_3464|http://edamontology.org/format_3748|http://edamontology.org/format_2376,,1.15,,,http://www.w3.org/TR/json-ld,,jsonld,,,,,,,format_3749,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://en.wikipedia.org/wiki/JSON-LD|http://www.iana.org/assignments/media-types/application/ld+json,"JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.",JavaScript Object Notation for Linked Data,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/ld+json,,,,,,,,
http://edamontology.org/format_3750,YAML,YAML Ain't Markup Language,"YAML (YAML Ain't Markup Language) is a human-readable tree-structured data serialisation language.|YAML version 1.2 is a superset of JSON; prior versions were ""not strictly compatible"".	|Data in YAML format can be serialised into text, or binary format.",FALSE,,,http://edamontology.org/format_1915,,1.15,,,http://yaml.org,,yaml|yml,,,,,,,format_3750,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://en.wikipedia.org/wiki/YAML|http://filext.com/file-extension/YML,YAML (YAML Ain't Markup Language) is a human-readable tree-structured data serialisation language.,YAML Ain't Markup Language,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3751,DSV,Tabular format|Delimiter-separated values,Tabular data represented as values in a text file delimited by some character.,FALSE,,,http://edamontology.org/format_2330,,1.16,,,,,,,,,,,,format_3751,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Tabular format,,https://en.wikipedia.org/wiki/Delimiter-separated_values,Tabular data represented as values in a text file delimited by some character.,Delimiter-separated values,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3752,CSV,Comma-separated values,Tabular data represented as comma-separated values in a text file.,FALSE,,,http://edamontology.org/format_3751,,1.16,,,,,csv,,,,,,,format_3752,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://filext.com/file-extension/CSV|http://www.iana.org/assignments/media-types/text/csv,Tabular data represented as comma-separated values in a text file.,Comma-separated values,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/text/csv,,,,,,,,
http://edamontology.org/format_3758,SEQUEST .out file,,"""Raw"" result file from SEQUEST database search.",FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2330,,1.16,,,,,,,,,,,,format_3758,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"""Raw"" result file from SEQUEST database search.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3764,idXML,,XML file format for files containing information about peptide identifications from mass spectrometry data analysis carried out with OpenMS.,FALSE,,,http://edamontology.org/format_3245|http://edamontology.org/format_2332,,1.16,,,http://open-ms.sourceforge.net/schemas/,,,,,,,,,format_3764,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML file format for files containing information about peptide identifications from mass spectrometry data analysis carried out with OpenMS.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3765,KNIME datatable format,,Data table formatted such that it can be passed/streamed within the KNIME platform.,FALSE,,,http://edamontology.org/format_2032,,1.16,,,,,,,,,,,,format_3765,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Data table formatted such that it can be passed/streamed within the KNIME platform.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3770,UniProtKB XML,UniProt XML|UniProtKB XML format|UniProt XML format,UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.,FALSE,,,http://edamontology.org/format_2552|http://edamontology.org/format_2332|http://edamontology.org/format_2547,,1.16,,,http://www.uniprot.org/docs/uniprot.xsd,,,,,,,,,format_3770,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.,UniProt XML|UniProtKB XML format|UniProt XML format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3771,UniProtKB RDF,UniProtKB RDF format|UniProt RDF|UniProt RDF format|UniProtKB RDF/XML format|UniProt RDF/XML|UniProt RDF/XML format|UniProtKB RDF/XML,UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).,FALSE,,,http://edamontology.org/format_2547|http://edamontology.org/format_2376,,1.16,,,http://www.uniprot.org/format/uniprot_rdf,,,,,,,,,format_3771,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).,UniProtKB RDF format|UniProt RDF|UniProt RDF format,UniProtKB RDF/XML format|UniProt RDF/XML|UniProt RDF/XML format|UniProtKB RDF/XML,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3772,BioJSON (BioXSD),BioXSD JSON|BioXSD+JSON|BioJSON format (BioXSD)|BioXSD|GTrack BioJSON|BioJSON (BioXSD data model)|BioXSD in JSON format|BioXSD in JSON|BioXSD JSON format|BioXSD BioJSON format|BioXSD BioJSON|BioXSD/GTrack BioJSON|BioXSD|BioJSON|BioYAML BioJSON,"BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.",FALSE,,,http://edamontology.org/format_1919|http://edamontology.org/format_3464|http://edamontology.org/format_2571|http://edamontology.org/format_1921|http://edamontology.org/format_1920,http://doi.org/10.7490/f1000research.1113048.1,1.16,,,http://bioxsd.org,http://bioxsd.org/sequenceRecord.json|http://bioxsd.org/sequenceRecord.xml+json+yaml.xml,,,,,,,,format_3772,,,,,,,,,,,,,,,,,,,,,,,,,,"Work in progress. 'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioJSON' is the JSON format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'.",,,,,http://bioxsd.org,"BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.",BioXSD JSON|BioXSD+JSON|BioJSON format (BioXSD)|BioXSD|GTrack BioJSON|BioJSON (BioXSD data model)|BioXSD in JSON format|BioXSD in JSON|BioXSD JSON format|BioXSD BioJSON format|BioXSD BioJSON|BioXSD/GTrack BioJSON|BioXSD|BioJSON|BioYAML BioJSON,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3773,BioYAML,BioXSD BioYAML|BioXSD+YAML|BioYAML (BioXSD)|BioXSD|GTrack BioYAML|BioXSD|BioJSON|BioYAML BioYAML|BioYAML (BioXSD data model)|BioXSD BioYAML format|BioXSD/GTrack BioYAML|BioXSD YAML format|BioYAML format|BioYAML format (BioXSD)|BioXSD in YAML|BioXSD in YAML format|BioXSD YAML,"BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.",FALSE,,,http://edamontology.org/format_1919|http://edamontology.org/format_2571|http://edamontology.org/format_1921|http://edamontology.org/format_1920|http://edamontology.org/format_3750,http://doi.org/10.7490/f1000research.1113048.1,1.16,,,http://bioxsd.org,http://bioxsd.org/sequenceRecord.yaml|http://bioxsd.org/sequenceRecord.xml+json+yaml.xml,,,,,,,,format_3773,,,,,,,,,,,,,,,,,,,,,,,,,,"Work in progress. 'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioYAML' is the YAML format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'.",,,,,http://bioxsd.org,"BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.",BioXSD BioYAML|BioXSD+YAML|BioYAML (BioXSD)|BioXSD|GTrack BioYAML|BioXSD|BioJSON|BioYAML BioYAML|BioYAML (BioXSD data model)|BioXSD BioYAML format|BioXSD/GTrack BioYAML|BioXSD YAML format|BioYAML format|BioYAML format (BioXSD)|BioXSD in YAML|BioXSD in YAML format|BioXSD YAML,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3774,BioJSON (Jalview),Jalview BioJSON format|JSON format (Jalview)|BioJSON format (Jalview)|JSON (Jalview)|Jalview JSON|Jalview JSON format|Jalview BioJSON,"BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.",FALSE,,,http://edamontology.org/format_3464|http://edamontology.org/format_1921|http://edamontology.org/format_1920,,1.16,,,http://jalview.github.io/biojson,,,,,,,,,format_3774,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://jalview.github.io/biojson,"BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.",Jalview BioJSON format|JSON format (Jalview)|BioJSON format (Jalview)|JSON (Jalview)|Jalview JSON|Jalview JSON format|Jalview BioJSON,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3775,GSuite,BioXSD/GTrack GSuite|GTrack|BTrack|GSuite GSuite|GSuite (GTrack ecosystem of formats)|BioXSD|GTrack GSuite|GTrack|GSuite|BTrack GSuite|GSuite format,"GSuite is a tabular format for collections of genome or sequence feature tracks, suitable for integrative multi-track analysis. GSuite contains links to genome/sequence tracks, with additional metadata.",FALSE,,,http://edamontology.org/format_1920|http://edamontology.org/format_2330,http://doi.org/10.7490/f1000research.1112716.1|http://dx.doi.org/10.1101/067561,1.16,,,https://hyperbrowser.uio.no/gsuite/static/hyperbrowser/gsuite/GSuite_specification.txt|https://hyperbrowser.uio.no/gsuite/static/hyperbrowser/gsuite/GSuite_specification.html,,,,,,,,,format_3775,,,,,,,,,,,,,,,,,,,,,,,,,,"'GSuite' belongs to the 'BioXSD|GTrack' ecosystem of generic formats, and particular to its subset, the 'GTrack ecosystem' (GTrack, GSuite, BTrack). 'GSuite' is the tabular format for an annotated collection of individual GTrack files.",,,,,https://hyperbrowser.uio.no/gsuite/static/hyperbrowser/gsuite/GSuite_specification.txt|https://hyperbrowser.uio.no/gsuite/static/hyperbrowser/gsuite/GSuite_specification.html,"GSuite is a tabular format for collections of genome or sequence feature tracks, suitable for integrative multi-track analysis. GSuite contains links to genome/sequence tracks, with additional metadata.",BioXSD/GTrack GSuite|GTrack|BTrack|GSuite GSuite|GSuite (GTrack ecosystem of formats)|BioXSD|GTrack GSuite|GTrack|GSuite|BTrack GSuite|GSuite format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3776,BTrack,GTrack|BTrack|GSuite BTrack|BTrack (GTrack ecosystem of formats)|BTrack format|GTrack|GSuite|BTrack BTrack|BioXSD/GTrack BTrack|BioXSD|GTrack BTrack,"BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.",FALSE,,,http://edamontology.org/format_1920|http://edamontology.org/format_2548|http://edamontology.org/format_2919|http://edamontology.org/format_2333,,1.16,,,,,,,,,,,,format_3776,,,,,,,,,,,,,,,,,,,,,,,,,,"'BTrack' belongs to the 'BioXSD|GTrack' ecosystem of generic formats, and particular to its subset, the 'GTrack ecosystem' (GTrack, GSuite, BTrack). 'BTrack' is the binary, optionally compressed HDF5-based version of the GTrack and GSuite formats.",,,,,,"BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.",GTrack|BTrack|GSuite BTrack|BTrack (GTrack ecosystem of formats)|BTrack format|GTrack|GSuite|BTrack BTrack|BioXSD/GTrack BTrack|BioXSD|GTrack BTrack,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3777,MCPD,Bioversity MCPD|Multi-Crop Passport Descriptors|MCPD format|Multi-Crop Passport Descriptors format|FAO MCPD|MCPD V.1|MCPD V.2|IPGRI MCPD,The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD) is an international standard format for exchange of germplasm information.,FALSE,,,http://edamontology.org/format_3706|http://edamontology.org/format_2330,,1.16,,,https://www.bioversityinternational.org/fileadmin/user_upload/online_library/publications/pdfs/FAO-Bioversity_multi_crop_passport_descriptors_V_2_Final_rev_1526.pdf|https://www.bioversityinternational.org/fileadmin/_migrated/uploads/tx_news/FAO_IPGRI_Multi-Crop_Passport_Descriptors__MCPD__124_01.pdf|https://www.bioversityinternational.org/e-library/publications/detail/faobioversity-multi-crop-passport-descriptors-v2-mcpd-v2/|https://www.bioversityinternational.org/e-library/publications/detail/faoipgri-multi-crop-passport-descriptors-mcpd/,,,,,,,,,format_3777,,,,,,,,,,,,,,,,,,,,,,,,,,"Multi-Crop Passport Descriptors is a format available in 2 successive versions, V.1 (FAO/IPGRI 2001) and V.2 (FAO/Bioversity 2012).",,,,,https://www.bioversityinternational.org/fileadmin/user_upload/online_library/publications/pdfs/FAO-Bioversity_multi_crop_passport_descriptors_V_2_Final_rev_1526.pdf|https://www.bioversityinternational.org/fileadmin/_migrated/uploads/tx_news/FAO_IPGRI_Multi-Crop_Passport_Descriptors__MCPD__124_01.pdf|https://www.bioversityinternational.org/e-library/publications/detail/faobioversity-multi-crop-passport-descriptors-v2-mcpd-v2/|https://www.bioversityinternational.org/e-library/publications/detail/faoipgri-multi-crop-passport-descriptors-mcpd/,The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD) is an international standard format for exchange of germplasm information.,Bioversity MCPD|Multi-Crop Passport Descriptors|MCPD format|Multi-Crop Passport Descriptors format|FAO MCPD,MCPD V.1|MCPD V.2|IPGRI MCPD,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,https://www.bioversityinternational.org/|http://www.fao.org,,,,,
http://edamontology.org/format_3780,Annotated text format,,"Data format of an annotated text, e.g. with recognised entities, concepts, and relations.",FALSE,,,http://edamontology.org/format_2350,,1.16,,,,,,,,,,,,format_3780,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data format of an annotated text, e.g. with recognised entities, concepts, and relations.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3781,PubAnnotation format,,JSON format of annotated scientific text used by PubAnnotations and other tools.,FALSE,,,http://edamontology.org/format_3780|http://edamontology.org/format_3464,http://dl.acm.org/citation.cfm?id=2391150,1.16,,,http://www.pubannotation.org/docs/annotation-format/,,,,,,,,,format_3781,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.pubannotation.org/docs/annotation-format/,JSON format of annotated scientific text used by PubAnnotations and other tools.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3782,BioC,,BioC is a standardised XML format for sharing and integrating text data and annotations.,FALSE,,,http://edamontology.org/format_2332|http://edamontology.org/format_3780,http://doi.org/10.1093/database/bat064,1.16,,,http://bioc.sourceforge.net/,,,,,,,,,format_3782,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://bioc.sourceforge.net/,BioC is a standardised XML format for sharing and integrating text data and annotations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3783,PubTator format,,Native textual export format of annotated scientific text from PubTator.,FALSE,,,http://edamontology.org/format_3780|http://edamontology.org/format_2330,http://doi.org/10.1093/database/bas041|http://doi.org/10.1093/nar/gkt441,1.16,,,https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/tutorial/,,,,,,,,,format_3783,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/tutorial/,Native textual export format of annotated scientific text from PubTator.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3784,Open Annotation format,,"A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.",FALSE,,,http://edamontology.org/format_3780|http://edamontology.org/format_2376|http://edamontology.org/format_3749,,1.16,,,http://www.openannotation.org/spec/core/core.html,,,,,,,,,format_3784,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.openannotation.org/spec/core/core.html,"A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3785,BioNLP Shared Task format,BRAT standoff format|BRAT format,"A family of similar formats of text annotation, used by BRAT and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013), BRAT format, BRAT standoff format, and similar.",FALSE,,,http://edamontology.org/format_3780|http://edamontology.org/format_2330,,1.16,,,http://2013.bionlp-st.org/file-formats|http://2011.bionlp-st.org/home/file-formats|http://www.nactem.ac.uk/tsujii/GENIA/SharedTask/detail.shtml#format|http://brat.nlplab.org/standoff.html|https://github.com/nlplab/brat/wiki/Annotation-Data-Format,http://brat.nlplab.org/examples.html|http://www.nactem.ac.uk/tsujii/GENIA/SharedTask/detail.shtml#format,,,,,,,,format_3785,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://2013.bionlp-st.org/file-formats|http://2011.bionlp-st.org/home/file-formats|http://www.nactem.ac.uk/tsujii/GENIA/SharedTask/detail.shtml#format|http://brat.nlplab.org/standoff.html|https://github.com/nlplab/brat/wiki/Annotation-Data-Format,"A family of similar formats of text annotation, used by BRAT and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013), BRAT format, BRAT standoff format, and similar.",BRAT standoff format|BRAT format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3787,Query language,Query format,A query language (format) for structured database queries.,FALSE,,,http://edamontology.org/format_2350,,1.16,,,,,,,,,,,,format_3787,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A query language (format) for structured database queries.,Query format,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/format_3788,SQL,Structured Query Language,SQL (Structured Query Language) is the de-facto standard query language (format of queries) for querying and manipulating data in relational databases.,FALSE,,,http://edamontology.org/format_2330,,1.16,,,,,sql,,,,,,,format_3788,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/sql|http://filext.com/file-extension/SQL,SQL (Structured Query Language) is the de-facto standard query language (format of queries) for querying and manipulating data in relational databases.,Structured Query Language,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,http://www.iana.org/assignments/media-types/application/sql,,,,,,,,
http://edamontology.org/format_3789,XQuery,XML Query,"XQuery (XML Query) is a query language (format of queries) for querying and manipulating structured and unstructured data, usually in the form of XML, text, and with vendor-specific extensions for other data formats (JSON, binary, etc.).",FALSE,,,http://edamontology.org/format_2330,,1.16,,,https://www.w3.org/XML/Query/,,xq|xqy|xquery,,,,,,,format_3789,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://www.w3.org/XML/Query/,"XQuery (XML Query) is a query language (format of queries) for querying and manipulating structured and unstructured data, usually in the form of XML, text, and with vendor-specific extensions for other data formats (JSON, binary, etc.).",XML Query,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3790,SPARQL,SPARQL Protocol and RDF Query Language,SPARQL (SPARQL Protocol and RDF Query Language) is a semantic query language for querying and manipulating data stored in Resource Description Framework (RDF) format.,FALSE,,,http://edamontology.org/format_2330,,1.16,,,https://www.w3.org/TR/sparql11-query/,,,,,,,,,format_3790,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://www.w3.org/TR/sparql11-query/,SPARQL (SPARQL Protocol and RDF Query Language) is a semantic query language for querying and manipulating data stored in Resource Description Framework (RDF) format.,SPARQL Protocol and RDF Query Language,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/format_3804,xsd,,XML format for XML Schema.,FALSE,,,http://edamontology.org/format_2332,,1.17,,,,,,,,,,,,format_3804,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,XML format for XML Schema.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#formats,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0004,Operation,Function|Computational procedure|Computational subroutine|Computational operation|Function (programming)|Lambda abstraction|Mathematical function|Mathematical operation|Computational method|Computational tool|sumo:Function|Process,"A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs).|Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.",FALSE,,,http://www.w3.org/2002/07/owl#Thing,,beta12orEarlier,,,,,,,,,,,,operation_0004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Function,,,"A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs).",,Computational procedure|Computational subroutine|Computational operation|Function (programming)|Lambda abstraction|Mathematical function|Mathematical operation|Computational method,Computational tool|sumo:Function|Process,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_0224,Query and retrieval,Database retrieval|Query,Search or query a data resource and retrieve entries and / or annotation.,FALSE,,,http://edamontology.org/operation_2409,,beta12orEarlier,,,,,,,,,,,,operation_0224,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search or query a data resource and retrieve entries and / or annotation.,Database retrieval,Query,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0225,Data retrieval (database cross-reference),,Search database to retrieve all relevant references to a particular entity or entry.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0225,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Search database to retrieve all relevant references to a particular entity or entry.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0226,Annotation,,"Annotate an entity (typically a biological or biomedical database entity) with terms from a controlled vocabulary.|This is a broad concept and is used a placeholder for other, more specific concepts.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_0226,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotate an entity (typically a biological or biomedical database entity) with terms from a controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_0227,Indexing,Database indexing|Data indexing,Generate an index of (typically a file of) biological data.,FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_0227,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate an index of (typically a file of) biological data.,Database indexing|Data indexing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_0228,Data index analysis,,Analyse an index of biological data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0228,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0227,,,,,Analyse an index of biological data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0229,Annotation retrieval (sequence),,Retrieve basic information about a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0229,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve basic information about a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0230,Sequence generation,,Generate a molecular sequence by some means.,FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0230,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a molecular sequence by some means.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0231,Sequence editing,,"Edit or change a molecular sequence, either randomly or specifically.",FALSE,,,http://edamontology.org/operation_3096|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0231,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit or change a molecular sequence, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0232,Sequence merging,Sequence splicing|Paired-end stitching|Read merging|Read stitching|Paired-end merging,Merge two or more (typically overlapping) molecular sequences.,FALSE,,,http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0232,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Merge two or more (typically overlapping) molecular sequences.,Sequence splicing,Paired-end stitching|Read merging|Read stitching|Paired-end merging,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0233,Sequence conversion,,Convert a molecular sequence from one type to another.,FALSE,,,http://edamontology.org/operation_3434|http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0233,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Convert a molecular sequence from one type to another.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0234,Sequence complexity calculation,,"Calculate sequence complexity, for example to find low-complexity regions in sequences.",FALSE,,,http://edamontology.org/operation_0236,,beta12orEarlier,,,,,,,,,,,,operation_0234,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate sequence complexity, for example to find low-complexity regions in sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0235,Sequence ambiguity calculation,,"Calculate sequence ambiguity, for example identity regions in protein or nucleotide sequences with many ambiguity codes.",FALSE,,,http://edamontology.org/operation_0236,,beta12orEarlier,,,,,,,,,,,,operation_0235,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate sequence ambiguity, for example identity regions in protein or nucleotide sequences with many ambiguity codes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0236,Sequence composition calculation,,Calculate character or word composition or frequency of a molecular sequence.,FALSE,,,http://edamontology.org/operation_3438|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate character or word composition or frequency of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0237,Repeat sequence analysis,,"Find and/or analyse repeat sequences in (typically nucleotide) sequences.|Repeat sequences include tandem repeats, inverted or palindromic repeats, DNA microsatellites (Simple Sequence Repeats or SSRs), interspersed repeats, maximal duplications and reverse, complemented and reverse complemented repeats etc. Repeat units can be exact or imperfect, in tandem or dispersed, of specified or unspecified length.",FALSE,,,http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0237,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find and/or analyse repeat sequences in (typically nucleotide) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0238,Sequence motif discovery,Motif discovery,Discover new motifs or conserved patterns in sequences or sequence alignments (de-novo discovery).|Motifs and patterns might be conserved or over-represented (occur with improbable frequency).,FALSE,,,http://edamontology.org/operation_0253|http://edamontology.org/operation_2404,,beta12orEarlier,,,,,,,,,,,,operation_0238,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Discover new motifs or conserved patterns in sequences or sequence alignments (de-novo discovery).,Motif discovery,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0239,Sequence motif recognition,Sequence signature detection|Sequence signature recognition|Motif scanning|Sequence motif search|Motif detection|Motif search|Sequence profile search|Motif recognition|Sequence motif detection,"Find (scan for) known motifs, patterns and regular expressions in molecular sequence(s).",FALSE,,,http://edamontology.org/operation_0253|http://edamontology.org/operation_2404,,beta12orEarlier,,,,,,,,,,,,operation_0239,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Find (scan for) known motifs, patterns and regular expressions in molecular sequence(s).",Sequence signature detection|Sequence signature recognition|Motif scanning,Sequence motif search|Motif detection|Motif search|Sequence profile search|Motif recognition|Sequence motif detection,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0240,Sequence motif comparison,,Find motifs shared by molecular sequences.,FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_2404,,beta12orEarlier,,,,,,,,,,,,operation_0240,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find motifs shared by molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0241,Transcription regulatory sequence analysis,,"Analyse the sequence, conformational or physicochemical properties of transcription regulatory elements in DNA sequences.|For example transcription factor binding sites (TFBS) analysis to predict accessibility of DNA to binding factors.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0241,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0438,,,,,"Analyse the sequence, conformational or physicochemical properties of transcription regulatory elements in DNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0242,Conserved transcription regulatory sequence identification,,"Identify common, conserved (homologous) or synonymous transcriptional regulatory motifs (transcription factor binding sites).|For example cross-species comparison of transcription factor binding sites (TFBS). Methods might analyse co-regulated or co-expressed genes, or sets of oppositely expressed genes.",FALSE,,,http://edamontology.org/operation_0438|http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0242,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify common, conserved (homologous) or synonymous transcriptional regulatory motifs (transcription factor binding sites).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0243,Protein property calculation (from structure),,"Extract, calculate or predict non-positional (physical or chemical) properties of a protein from processing a protein (3D) structure.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0243,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Extract, calculate or predict non-positional (physical or chemical) properties of a protein from processing a protein (3D) structure.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0250,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2406|http://edamontology.org/operation_0250,,,,,,
http://edamontology.org/operation_0244,Protein flexibility and motion analysis,,"Analyse flexibility and motion in protein structure.|Use this concept for analysis of flexible and rigid residues, local chain deformability, regions undergoing conformational change, molecular vibrations or fluctuational dynamics, domain motions or other large-scale structural transitions in a protein structure.",FALSE,,,http://edamontology.org/operation_2476|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0244,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse flexibility and motion in protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0245,Protein structural motif recognition,Protein structural feature identification,"Identify or screen for 3D structural motifs in protein structure(s).|This includes conserved substructures and conserved geometry, such as spatial arrangement of secondary structure or protein backbone. Methods might use structure alignment, structural templates, searches for similar electrostatic potential and molecular surface shape, surface-mapping of phylogenetic information etc.",FALSE,,,http://edamontology.org/operation_2406|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0245,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or screen for 3D structural motifs in protein structure(s).,Protein structural feature identification,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0246,Protein domain recognition,,Identify structural domains in a protein structure from first principles (for example calculations on structural compactness).,FALSE,,,http://edamontology.org/operation_2406|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0246,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify structural domains in a protein structure from first principles (for example calculations on structural compactness).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0247,Protein architecture analysis,,Analyse the architecture (spatial arrangement of secondary structure) of protein structure(s).,FALSE,,,http://edamontology.org/operation_2406,,beta12orEarlier,,,,,,,,,,,,operation_0247,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse the architecture (spatial arrangement of secondary structure) of protein structure(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0248,Residue interaction calculation,,"Calculate or extract inter-atomic, inter-residue or residue-atom contacts, distances and interactions in protein structure(s).",FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0248,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ListContactsRelaxed|WHATIF: SymShellTwoXML|WHATIF: SymShellOneXML|WHATIF:ListSideChainContactsRelaxed|WHATIF:ListSideChainContactsNormal|WHATIF:ListContactsNormal|WHATIF: SymShellTenXML|WHATIF: SymShellFiveXML,"Calculate or extract inter-atomic, inter-residue or residue-atom contacts, distances and interactions in protein structure(s).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0249,Protein geometry calculation,Cysteine torsion angle calculation|Torsion angle calculation|Backbone torsion angle calculation|Tau angle calculation,"Calculate, visualise or analyse phi/psi angles of a protein structure.",FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0249,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:CysteineTorsions|WHATIF:ResidueTorsions|WHATIF:ShowTauAngle|WHATIF:ResidueTorsionsBB,"Calculate, visualise or analyse phi/psi angles of a protein structure.",,Cysteine torsion angle calculation|Torsion angle calculation|Backbone torsion angle calculation|Tau angle calculation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0250,Protein property calculation,Protein property rendering|Protein property calculation (from structure)|Protein structural property calculation|Protein property calculation (from sequence),"Extract, calculate or predict non-positional (physical or chemical) properties of a protein, including any non-positional properties of the molecular sequence, from processing a protein sequence or 3D structure.
|This includes methods to render and visualise the properties of a protein sequence, and a residue-level search for properties such as solvent accessibility, hydropathy, secondary structure, ligand-binding etc.",FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_2502|http://edamontology.org/operation_3438,,beta12orEarlier,,,,,,,,,,,,operation_0250,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Extract, calculate or predict non-positional (physical or chemical) properties of a protein, including any non-positional properties of the molecular sequence, from processing a protein sequence or 3D structure.
",Protein property rendering,Protein property calculation (from structure)|Protein structural property calculation|Protein property calculation (from sequence),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0252,Peptide immunogenicity prediction,Immunogenicity prediction|Hopp and Woods plotting|MHC peptide immunogenicity prediction,"Predict antigenicity, allergenicity / immunogenicity, allergic cross-reactivity etc of peptides and proteins.|This includes methods that generate a graphical rendering of antigenicity of a protein, such as a Hopp and Woods plot.|This is usually done in the development of peptide-specific antibodies or multi-epitope vaccines. Methods might use sequence data (for example motifs) and / or structural data.",FALSE,,,http://edamontology.org/operation_2492|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0252,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict antigenicity, allergenicity / immunogenicity, allergic cross-reactivity etc of peptides and proteins.",Immunogenicity prediction,Hopp and Woods plotting|MHC peptide immunogenicity prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0253,Sequence feature detection,Sequence feature recognition|Sequence feature prediction|Motif database search|SO:0000110,"Predict, recognise and identify positional features in molecular sequences such as key functional sites or regions.|Look at ""Protein feature detection"" (http://edamontology.org/operation_3092) and ""Nucleic acid feature detection"" (http://edamontology.org/operation_0415) in case more specific terms are needed.",FALSE,,,http://edamontology.org/operation_2423|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0253,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise and identify positional features in molecular sequences such as key functional sites or regions.",Sequence feature recognition|Sequence feature prediction,Motif database search,SO:0000110,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0254,Data retrieval (feature table),,Extract a sequence feature table from a sequence database entry.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0254,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Extract a sequence feature table from a sequence database entry.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0255,Feature table query,,Query the features (in a feature table) of molecular sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0255,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query the features (in a feature table) of molecular sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0256,Sequence feature comparison,Feature comparison|Feature table comparison,Compare the feature tables of two or more molecular sequences.,FALSE,,,http://edamontology.org/operation_2424|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0256,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare the feature tables of two or more molecular sequences.,Feature comparison|Feature table comparison,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0257,Data retrieval (sequence alignment),,Display basic information about a sequence alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0257,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Display basic information about a sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0258,Sequence alignment analysis,,Analyse a molecular sequence alignment.,FALSE,,,http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0258,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a molecular sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0259,Sequence alignment comparison,,Compare (typically by aligning) two molecular sequence alignments.|See also 'Sequence profile alignment'.,FALSE,,,http://edamontology.org/operation_0258|http://edamontology.org/operation_2424,,beta12orEarlier,,,,,,,,,,,,operation_0259,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare (typically by aligning) two molecular sequence alignments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0260,Sequence alignment conversion,,Convert a molecular sequence alignment from one type to another (for example amino acid to coding nucleotide sequence).,FALSE,,,http://edamontology.org/operation_3434|http://edamontology.org/operation_3081,,beta12orEarlier,,,,,,,,,,,,operation_0260,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Convert a molecular sequence alignment from one type to another (for example amino acid to coding nucleotide sequence).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0261,Nucleic acid property processing,,Process (read and / or write) physicochemical property data of nucleic acids.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0261,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0262,,,,,Process (read and / or write) physicochemical property data of nucleic acids.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0262,Nucleic acid property calculation,,"Calculate or predict physical or chemical properties of nucleic acid molecules, including any non-positional properties of the molecular sequence.",FALSE,,,http://edamontology.org/operation_2478|http://edamontology.org/operation_3438,,beta12orEarlier,,,,,,,,,,,,operation_0262,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate or predict physical or chemical properties of nucleic acid molecules, including any non-positional properties of the molecular sequence.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0264,Splice transcript prediction,,Predict splicing alternatives or transcript isoforms from analysis of sequence data.,FALSE,,,http://edamontology.org/operation_2499,,beta12orEarlier,,,,,,,,,,,,operation_0264,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict splicing alternatives or transcript isoforms from analysis of sequence data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0265,Frameshift detection,Frameshift error detection,"Detect frameshifts in DNA sequences, including frameshift sites and signals, and frameshift errors from sequencing projects.|Methods include sequence alignment (if related sequences are available) and word-based sequence comparison.",FALSE,,,http://edamontology.org/operation_3195|http://edamontology.org/operation_3202,,beta12orEarlier,,,,,,,,,,,,operation_0265,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect frameshifts in DNA sequences, including frameshift sites and signals, and frameshift errors from sequencing projects.",,Frameshift error detection,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0266,Vector sequence detection,,"Detect vector sequences in nucleotide sequence, typically by comparison to a set of known vector sequences.",FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0266,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect vector sequences in nucleotide sequence, typically by comparison to a set of known vector sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0267,Protein secondary structure prediction,Secondary structure prediction (protein),"Predict secondary structure of protein sequences.|Methods might use amino acid composition, local sequence information, multiple sequence alignments, physicochemical features, estimated energy content, statistical algorithms, hidden Markov models, support vector machines, kernel machines, neural networks etc.",FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_3092|http://edamontology.org/operation_2479,,beta12orEarlier,,,,,,,,,,,,operation_0267,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict secondary structure of protein sequences.,Secondary structure prediction (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0268,Protein super-secondary structure prediction,,"Predict super-secondary structure of protein sequence(s).|Super-secondary structures include leucine zippers, coiled coils, Helix-Turn-Helix etc.",FALSE,,,http://edamontology.org/operation_0267,,beta12orEarlier,,,,,,,,,,,,operation_0268,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict super-secondary structure of protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0269,Transmembrane protein prediction,,Predict and/or classify transmembrane proteins or transmembrane (helical) domains or regions in protein sequences.,FALSE,,,http://edamontology.org/operation_0267|http://edamontology.org/operation_0270,,beta12orEarlier,,,,,,,,,,,,operation_0269,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict and/or classify transmembrane proteins or transmembrane (helical) domains or regions in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0270,Transmembrane protein analysis,,"Analyse transmembrane protein(s), typically by processing sequence and / or structural data, and write an informative report for example about the protein and its transmembrane domains / regions.|Use this (or child) concept for analysis of transmembrane domains (buried and exposed faces), transmembrane helices, helix topology, orientation, inter-helical contacts, membrane dipping (re-entrant) loops and other secondary structure etc. Methods might use pattern discovery, hidden Markov models, sequence alignment, structural profiles, amino acid property analysis, comparison to known domains or some combination (hybrid methods).",FALSE,,,http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_0270,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse transmembrane protein(s), typically by processing sequence and / or structural data, and write an informative report for example about the protein and its transmembrane domains / regions.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0271,Structure prediction,,Predict tertiary structure of a molecular (biopolymer) sequence.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2423,,beta12orEarlier,,,,,,,,,,,,operation_0271,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict tertiary structure of a molecular (biopolymer) sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0272,Residue interaction prediction,,"Predict contacts, non-covalent interactions and distance (constraints) between amino acids in protein sequences.|Methods usually involve multiple sequence alignment analysis.",FALSE,,,http://edamontology.org/operation_2479|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0272,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict contacts, non-covalent interactions and distance (constraints) between amino acids in protein sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0273,Protein interaction raw data analysis,,"Analyse experimental protein-protein interaction data from for example yeast two-hybrid analysis, protein microarrays, immunoaffinity chromatography followed by mass spectrometry, phage display etc.",FALSE,,,http://edamontology.org/operation_2949,,beta12orEarlier,,,,,,,,,,,,operation_0273,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse experimental protein-protein interaction data from for example yeast two-hybrid analysis, protein microarrays, immunoaffinity chromatography followed by mass spectrometry, phage display etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0274,Protein-protein interaction prediction (from protein sequence),,"Identify or predict protein-protein interactions, interfaces, binding sites etc in protein sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0274,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict protein-protein interactions, interfaces, binding sites etc in protein sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2464,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0275,Protein-protein interaction prediction (from protein structure),,"Identify or predict protein-protein interactions, interfaces, binding sites etc in protein structures.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0275,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict protein-protein interactions, interfaces, binding sites etc in protein structures.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2464,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0276,Protein interaction network analysis,,Analyse a network of protein interactions.,FALSE,,,http://edamontology.org/operation_2497|http://edamontology.org/operation_2949,,beta12orEarlier,,,,,,,,,,,,operation_0276,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a network of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0277,Protein interaction network comparison,,Compare two or more networks of protein interactions.,FALSE,,,http://edamontology.org/operation_0276|http://edamontology.org/operation_1778,,beta12orEarlier,,,,,,,,,,,,operation_0277,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more networks of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0278,RNA secondary structure prediction,RNA shape prediction,"Predict RNA secondary structure (for example knots, pseudoknots, alternative structures etc).|Methods might use RNA motifs, predicted intermolecular contacts, or RNA sequence-structure compatibility (inverse RNA folding).",FALSE,,,http://edamontology.org/operation_2439|http://edamontology.org/operation_0415|http://edamontology.org/operation_0279,,beta12orEarlier,,,,,,,,,,,,operation_0278,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict RNA secondary structure (for example knots, pseudoknots, alternative structures etc).",,RNA shape prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0279,Nucleic acid folding analysis,Nucleic acid folding|Nucleic acid folding prediction|Nucleic acid folding modelling,"Analyse some aspect of RNA/DNA folding, typically by processing sequence and/or structural data.",FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_2426|http://edamontology.org/operation_2481,,beta12orEarlier,,,,,,,,,,,,operation_0279,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse some aspect of RNA/DNA folding, typically by processing sequence and/or structural data.",Nucleic acid folding|Nucleic acid folding prediction|Nucleic acid folding modelling,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0280,Data retrieval (restriction enzyme annotation),,Retrieve information on restriction enzymes or restriction enzyme sites.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0280,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on restriction enzymes or restriction enzyme sites.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0281,Genetic marker identification,,"Identify genetic markers in DNA sequences.|A genetic marker is any DNA sequence of known chromosomal location that is associated with and specific to a particular gene or trait. This includes short sequences surrounding a SNP, Sequence-Tagged Sites (STS) which are well suited for PCR amplification, a longer minisatellites sequence etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0281,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0415,,,,,Identify genetic markers in DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0282,Genetic mapping,Genetic map construction|Functional mapping|Linkage mapping|Genetic map generation|QTL mapping,"Generate a genetic (linkage) map of a DNA sequence (typically a chromosome) showing the relative positions of genetic markers based on estimation of non-physical distances.|Mapping involves ordering genetic loci along a chromosome and estimating the physical distance between loci. A genetic map shows the relative (not physical) position of known genes and genetic markers.|This includes mapping of the genetic architecture of dynamic complex traits (functional mapping), e.g. by characterisation of the underlying quantitative trait loci (QTLs) or nucleotides (QTNs).",FALSE,,,http://edamontology.org/operation_2520|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_0282,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a genetic (linkage) map of a DNA sequence (typically a chromosome) showing the relative positions of genetic markers based on estimation of non-physical distances.,Genetic map construction|Functional mapping|Linkage mapping|Genetic map generation,QTL mapping,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0283,Linkage analysis,,"Analyse genetic linkage.|For example, estimate how close two genes are on a chromosome by calculating how often they are transmitted together to an offspring, ascertain whether two genes are linked and parental linkage, calculate linkage map distance etc.",FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0283,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse genetic linkage.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0284,Codon usage table generation,Codon usage table construction,Calculate codon usage statistics and create a codon usage table.,FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_0284,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate codon usage statistics and create a codon usage table.,Codon usage table construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0285,Codon usage table comparison,,Compare two or more codon usage tables.,FALSE,,,http://edamontology.org/operation_2998|http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_0285,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more codon usage tables.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0286,Codon usage analysis,synon: Codon usage table analysis|synon: Codon usage data analysis,"Process (read and / or write) codon usage data, e.g. analyse codon usage tables or codon usage in molecular sequences.",FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0286,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Process (read and / or write) codon usage data, e.g. analyse codon usage tables or codon usage in molecular sequences.",synon: Codon usage table analysis|synon: Codon usage data analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0287,Base position variability plotting,,Identify and plot third base position variability in a nucleotide sequence.,FALSE,,,http://edamontology.org/operation_3441|http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_0287,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify and plot third base position variability in a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0288,Sequence word comparison,,Find exact character or word matches between molecular sequences without full sequence alignment.,FALSE,,,http://edamontology.org/operation_2451,,beta12orEarlier,,,,,,,,,,,,operation_0288,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find exact character or word matches between molecular sequences without full sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0289,Sequence distance matrix generation,Phylogenetic distance matrix generation|Sequence distance matrix construction,Calculate a sequence distance matrix or otherwise estimate genetic distances between molecular sequences.,FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_0289,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a sequence distance matrix or otherwise estimate genetic distances between molecular sequences.,Phylogenetic distance matrix generation|Sequence distance matrix construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0290,Sequence redundancy removal,,"Compare two or more molecular sequences, identify and remove redundant sequences based on some criteria.",FALSE,,,http://edamontology.org/operation_2451,,beta12orEarlier,,,,,,,,,,,,operation_0290,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare two or more molecular sequences, identify and remove redundant sequences based on some criteria.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0291,Sequence clustering,Sequence cluster construction|Sequence cluster generation,"Build clusters of similar sequences, typically using scores from pair-wise alignment or other comparison of the sequences.|The clusters may be output or used internally for some other purpose.",FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_3429|http://edamontology.org/operation_3432,,beta12orEarlier,,,,,,,,,,,,operation_0291,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Build clusters of similar sequences, typically using scores from pair-wise alignment or other comparison of the sequences.",Sequence cluster construction|Sequence cluster generation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0292,Sequence alignment,Sequence alignment construction|Sequence alignment generation|Consensus-based sequence alignment,Align (identify equivalent sites within) molecular sequences.,FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_2928|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0292,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align (identify equivalent sites within) molecular sequences.,Sequence alignment construction|Sequence alignment generation,Consensus-based sequence alignment,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0293,Hybrid sequence alignment construction,,"Align two or more molecular sequences of different types (for example genomic DNA to EST, cDNA or mRNA).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0293,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0292,,,,,"Align two or more molecular sequences of different types (for example genomic DNA to EST, cDNA or mRNA).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0294,Structure-based sequence alignment,Sequence alignment generation (structure-based)|Structure-based sequence alignment construction|Structure-based sequence alignment generation|Sequence alignment (structure-based),Align molecular sequences using sequence and structural information.,FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0294,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align molecular sequences using sequence and structural information.,Sequence alignment generation (structure-based)|Structure-based sequence alignment construction|Structure-based sequence alignment generation|Sequence alignment (structure-based),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0295,Structure alignment,,Align (superimpose) molecular tertiary structures.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2483|http://edamontology.org/operation_2928,,beta12orEarlier,,,,,,,,,,,,operation_0295,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align (superimpose) molecular tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0296,Sequence profile generation,Sequence profile construction,Generate some type of sequence profile (for example a hidden Markov model) from a sequence alignment.,FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_0258,,beta12orEarlier,,,,,,,,,,,,operation_0296,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate some type of sequence profile (for example a hidden Markov model) from a sequence alignment.,Sequence profile construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0297,3D profile generation,Structural profile construction|Structural profile generation,Generate some type of structural (3D) profile or template from a structure or structure alignment.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_0297,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate some type of structural (3D) profile or template from a structure or structure alignment.,Structural profile construction|Structural profile generation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0298,Profile-profile alignment,Sequence profile alignment|Profile-to-profile alignment,"Align sequence profiles (representing sequence alignments).|Methods might perform one-to-one, one-to-many or many-to-many comparisons.  See also 'Sequence alignment comparison'.",FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0298,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align sequence profiles (representing sequence alignments).,Sequence profile alignment|Profile-to-profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0299,3D profile-to-3D profile alignment,3D profile alignment|Structural profile alignment,"Align structural (3D) profiles or templates (representing structures or structure alignments).|Methods might perform one-to-one, one-to-many or many-to-many comparisons.",FALSE,,,http://edamontology.org/operation_0295,,beta12orEarlier,,,,,,,,,,,,operation_0299,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align structural (3D) profiles or templates (representing structures or structure alignments).,3D profile alignment|Structural profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0300,Sequence-to-profile alignment,Sequence-profile alignment,"Align molecular sequence(s) to sequence profile(s).|A sequence profile typically represents a sequence alignment. Methods might perform one-to-one, one-to-many or many-to-many comparisons.",FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0300,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align molecular sequence(s) to sequence profile(s).,Sequence-profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0301,Sequence-to-3D-profile alignment,Sequence-3D profile alignment,"Align molecular sequence(s) to structural (3D) profile(s) or template(s) (representing a structure or structure alignment).|Methods might perform one-to-one, one-to-many or many-to-many comparisons.",FALSE,,,http://edamontology.org/operation_0303|http://edamontology.org/operation_2928,,beta12orEarlier,,,,,,,,,,,,operation_0301,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align molecular sequence(s) to structural (3D) profile(s) or template(s) (representing a structure or structure alignment).,Sequence-3D profile alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0302,Protein threading,Sequence-structure alignment,"Align molecular sequence to structure in 3D space (threading).|Use this concept for methods that evaluate sequence-structure compatibility by assessing residue interactions in 3D. Methods might perform one-to-one, one-to-many or many-to-many comparisons.",FALSE,,,http://edamontology.org/operation_0303|http://edamontology.org/operation_2928,,beta12orEarlier,,,,,,,,,,,,operation_0302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align molecular sequence to structure in 3D space (threading).,Sequence-structure alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0303,Protein fold recognition,Protein fold prediction|Protein domain prediction,"Recognize (predict and identify) known protein structural domains or folds in protein sequence(s).|Methods use some type of mapping between sequence and fold, for example secondary structure prediction and alignment, profile comparison, sequence properties, homologous sequence search, kernel machines etc. Domains and folds might be taken from SCOP or CATH.",FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_2406|http://edamontology.org/operation_3092|http://edamontology.org/operation_2479,,beta12orEarlier,,,,,,,,,,,,operation_0303,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Recognize (predict and identify) known protein structural domains or folds in protein sequence(s).,Protein fold prediction|Protein domain prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0304,Metadata retrieval,,"Search for and retrieve data concerning or describing some core data, as distinct from the primary data that is being described.|This includes documentation, general information and other metadata on entities such as databases, database entries and tools.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Too fine-grained, the operation (Data retrieval) hasn't changed, just what is retrieved.",,,,,,,,,,operation_0304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search for and retrieve data concerning or describing some core data, as distinct from the primary data that is being described.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2422,,,,,,,,,,,,,1.17,http://edamontology.org/operation_2422,,,,,,
http://edamontology.org/operation_0305,Literature search,,"Query scientific literature, in search for articles, article data, concepts, named entities, or for statistics.",FALSE,,,http://edamontology.org/operation_2421,,beta12orEarlier,,,,,,,,,,,,operation_0305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Query scientific literature, in search for articles, article data, concepts, named entities, or for statistics.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0306,Text mining,Text analysis|Literature mining|Text analytics|Text data mining|Article analysis|Literature analysis,Process and analyse text (typically scientific literature) to extract information from it.,FALSE,,,http://edamontology.org/operation_2945|http://edamontology.org/operation_2423,,beta12orEarlier,,,,,,,,,,,,operation_0306,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Text analysis,,,Process and analyse text (typically scientific literature) to extract information from it.,Literature mining|Text analytics|Text data mining,,Article analysis|Literature analysis,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0307,Virtual PCR,,Perform in-silico (virtual) PCR.,FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0307,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Perform in-silico (virtual) PCR.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0308,PCR primer design,PCR primer prediction|PCR primer design (for genotyping polymorphisms)|PCR primer design (for methylation PCRs)|PCR primer design (for large scale sequencing)|PCR primer design (for gene transcription profiling)|PCR primer design (based on gene structure)|PCR primer design (for conserved primers),"Design or predict oligonucleotide primers for PCR and DNA amplification etc.|Primer design involves predicting or selecting primers that are specific to a provided PCR template. Primers can be designed with certain properties such as size of product desired, primer size etc. The output might be a minimal or overlapping primer set.|This includes predicting primers based on gene structure, promoters, exon-exon junctions, predicting primers that are conserved across multiple genomes or species, primers for for gene transcription profiling,  for genotyping polymorphisms, for example single nucleotide polymorphisms (SNPs),  for large scale sequencing, or for methylation PCRs.",FALSE,,,http://edamontology.org/operation_2419,,beta12orEarlier,,,,,,,,,,,,operation_0308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Design or predict oligonucleotide primers for PCR and DNA amplification etc.,PCR primer prediction,PCR primer design (for genotyping polymorphisms)|PCR primer design (for methylation PCRs)|PCR primer design (for large scale sequencing)|PCR primer design (for gene transcription profiling)|PCR primer design (based on gene structure)|PCR primer design (for conserved primers),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0309,Microarray probe design,Microarray probe prediction,"Predict and/or optimize oligonucleotide probes for DNA microarrays, for example for transcription profiling of genes, or for genomes and gene families.",FALSE,,,http://edamontology.org/operation_2419|http://edamontology.org/operation_2430,,beta12orEarlier,,,,,,,,,,,,operation_0309,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict and/or optimize oligonucleotide probes for DNA microarrays, for example for transcription profiling of genes, or for genomes and gene families.",Microarray probe prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0310,Sequence assembly,Metagenomic assembly|Sequence assembly editing,"Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence.|For example, assemble overlapping reads from paired-end sequencers into contigs (a contiguous sequence corresponding to read overlaps). Or assemble contigs, for example ESTs and genomic DNA fragments, depending on the detected fragment overlaps.",FALSE,,,http://edamontology.org/operation_2478|http://edamontology.org/operation_3433,,beta12orEarlier,,,,,,,,,,,,operation_0310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence.,,Metagenomic assembly|Sequence assembly editing,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0311,Microarray data standardisation and normalisation,,Standardize or normalize microarray data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0311,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Standardize or normalize microarray data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3435,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_0312,Sequencing-based expression profile data processing,,"Process (read and / or write) SAGE, MPSS or SBS experimental data.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0312,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,"Process (read and / or write) SAGE, MPSS or SBS experimental data.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0313,Gene expression profile clustering,,"Perform cluster analysis of gene expression data to identify groups with similar gene-expression profiles, for example by clustering.",FALSE,,,http://edamontology.org/operation_0315|http://edamontology.org/operation_3432,,beta12orEarlier,,,,,,,,,,,,operation_0313,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Perform cluster analysis of gene expression data to identify groups with similar gene-expression profiles, for example by clustering.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0314,Gene expression profiling,Gene expression quantification|Gene expression profile construction|Gene expression profile generation|Metagenomic inference|RNA profiling|mRNA profiling|Gene transcription profiling|Non-coding RNA profiling|Functional profiling|Protein profiling,"The measurement of the gene expression of multiple genes in a cell, tissue, sample etc., in order to get an impression of biological function.|Metagenomic inference is the profiling of phylogenetic marker genes in order to predict metagenome function.|Gene expression profiling generates some sort of gene expression profile, for example from microarray data.",FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_2495,,beta12orEarlier,,,,,,,,,,,,operation_0314,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Gene expression quantification,,,"The measurement of the gene expression of multiple genes in a cell, tissue, sample etc., in order to get an impression of biological function.",Gene expression profile construction|Gene expression profile generation,Metagenomic inference|RNA profiling|mRNA profiling|Gene transcription profiling|Non-coding RNA profiling,Functional profiling|Protein profiling,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0315,Gene expression profile comparison,,Comparison of gene expression profiles.,FALSE,,,http://edamontology.org/operation_2998|http://edamontology.org/operation_2495,,beta12orEarlier,,,,,,,,,,,,operation_0315,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Comparison of gene expression profiles.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0316,Functional profiling,,Interpret (in functional terms) and annotate gene expression data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0316,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Interpret (in functional terms) and annotate gene expression data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2495,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0317,EST and cDNA sequence analysis,,"Analyse EST or cDNA sequences.|For example, identify full-length cDNAs from EST sequences or detect potential EST antisense transcripts.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0317,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2403,,,,,Analyse EST or cDNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0318,Structural genomics target selection,,Identify and select targets for protein structural determination.|Methods will typically navigate a graph of protein families of known structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0318,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2406,,,,,Identify and select targets for protein structural determination.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0319,Protein secondary structure assignment,,Assign secondary structure from protein coordinate or experimental data.,FALSE,,,http://edamontology.org/operation_3023,,beta12orEarlier,,,,,,,,,,,,operation_0319,,,,,,,,,,,,,,,,,,,,,,,,,,"Includes secondary structure assignment from circular dichroism (CD) spectroscopic data, and from protein coordinate data.",,,,,,Assign secondary structure from protein coordinate or experimental data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0320,Protein structure assignment,,Assign a protein tertiary structure (3D coordinates) from raw experimental data.,FALSE,,,http://edamontology.org/operation_2406|http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_0320,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign a protein tertiary structure (3D coordinates) from raw experimental data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0321,Protein model validation,Protein structure validation|Residue validation,"Evaluate the quality or correctness a protein three-dimensional model.|This includes methods that calculate poor quality residues. The scoring function to identify poor quality residues may consider residues with bad atoms or atoms with high B-factor, residues in the N- or C-terminal position, adjacent to an unstructured residue, non-canonical residues, glycine and proline (or adjacent to these such residues).|Model validation might involve checks for atomic packing, steric clashes (bumps), volume irregularities, agreement with electron density maps, number of amino acid residues, percentage of residues with missing or bad atoms, irregular Ramachandran Z-scores, irregular Chi-1 / Chi-2 normality scores, RMS-Z score on bonds and angles etc.|The PDB file format has had difficulties, inconsistencies and errors. Corrections can include identifying a meaningful sequence, removal of alternate atoms, correction of nomenclature problems, removal of incomplete residues and spurious waters, addition or removal of water, modelling of missing side chains, optimisation of cysteine bonds, regularisation of bond lengths, bond angles and planarities etc.",FALSE,,,http://edamontology.org/operation_2428|http://edamontology.org/operation_2406,,beta12orEarlier,,,,,,,,,,,,operation_0321,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: UseFileDB|WHATIF: CorrectedPDBasXML|WHATIF: UseResidueDB,Evaluate the quality or correctness a protein three-dimensional model.,Protein structure validation,Residue validation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0322,Molecular model refinement,Protein model refinement,"Refine (after evaluation) a model of a molecular structure (typically a protein structure) to reduce steric clashes, volume irregularities etc.",FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2425,,beta12orEarlier,,,,,,,,,,,,operation_0322,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: CorrectedPDBasXML,"Refine (after evaluation) a model of a molecular structure (typically a protein structure) to reduce steric clashes, volume irregularities etc.",,Protein model refinement,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0323,Phylogenetic tree generation,Phylogenetic tree construction,Construct a phylogenetic tree.|Phylogenetic trees are usually constructed from a set of sequences from which an alignment (or data matrix) is calculated.,FALSE,,,http://edamontology.org/operation_0324|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_0323,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree.,Phylogenetic tree construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0324,Phylogenetic tree analysis,,"Analyse an existing phylogenetic tree or trees, typically to detect features or make predictions.",FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_0324,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse an existing phylogenetic tree or trees, typically to detect features or make predictions.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0325,Phylogenetic tree comparison,,"Compare two or more phylogenetic trees.|For example, to produce a consensus tree, subtrees, supertrees, calculate distances between trees or test topological similarity between trees (e.g. a congruence index) etc.",FALSE,,,http://edamontology.org/operation_0324|http://edamontology.org/operation_2424,,beta12orEarlier,,,,,,,,,,,,operation_0325,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more phylogenetic trees.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0326,Phylogenetic tree editing,,Edit a phylogenetic tree.,FALSE,,,http://edamontology.org/operation_0324|http://edamontology.org/operation_3096,,beta12orEarlier,,,,,,,,,,,,operation_0326,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Edit a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0327,Phylogenetic footprinting / shadowing,,"Infer a phylogenetic tree by comparing orthologous sequences in different species, particularly many closely related species (phylogenetic shadowing).|A phylogenetic 'shadow' represents the additive differences between individual sequences. By masking or 'shadowing' variable positions a conserved sequence is produced with few or none of the variations, which is then compared to the sequences of interest to identify significant regions of conservation.",FALSE,,,http://edamontology.org/operation_0540,,beta12orEarlier,,,,,,,,,,,,operation_0327,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Infer a phylogenetic tree by comparing orthologous sequences in different species, particularly many closely related species (phylogenetic shadowing).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0328,Protein folding simulation,,Simulate the folding of a protein.,FALSE,,,http://edamontology.org/operation_2415,,beta12orEarlier,,,,,,,,,,,,operation_0328,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Simulate the folding of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0329,Protein folding pathway prediction,,Predict the folding pathway(s) or non-native structural intermediates of a protein.,FALSE,,,http://edamontology.org/operation_2415|http://edamontology.org/operation_3023,,beta12orEarlier,,,,,,,,,,,,operation_0329,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the folding pathway(s) or non-native structural intermediates of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0330,Protein SNP mapping,,Map and model the effects of single nucleotide polymorphisms (SNPs) on protein structure(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0330,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Map and model the effects of single nucleotide polymorphisms (SNPs) on protein structure(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0331,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0331,Protein modelling (mutation),Protein mutation modelling|Rotamer likelihood prediction|Protein SNP mapping,"Predict the effect of point mutation on a protein structure, in terms of strucural effects and protein folding, stability and function.|This includes 1) rotamer likelihood prediction: the prediction of rotamer likelihoods for all 20 amino acid types at each position in a protein structure, where output typically includes, for each residue position, the likelihoods for the 20 amino acid types with estimated reliability of the 20 likelihoods.  2) Protein SNP mapping, which maps and modesl the effects of single nucleotide polymorphisms (SNPs) on protein structure(s).  Methods might predict silent or pathological mutations.",FALSE,,,http://edamontology.org/operation_0477|http://edamontology.org/operation_3023,,beta12orEarlier,,,,,,,,,,,,operation_0331,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict the effect of point mutation on a protein structure, in terms of strucural effects and protein folding, stability and function.",Protein mutation modelling,Rotamer likelihood prediction|Protein SNP mapping,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0332,Immunogen design,,Design molecules that elicit an immune response (immunogens).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0332,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Design molecules that elicit an immune response (immunogens).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0252,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0333,Zinc finger prediction,,Predict and optimise zinc finger protein domains for DNA/RNA binding (for example for transcription factors and nucleases).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0333,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict and optimise zinc finger protein domains for DNA/RNA binding (for example for transcription factors and nucleases).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0420,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0420,,,,,,
http://edamontology.org/operation_0334,Enzyme kinetics calculation,,"Calculate Km, Vmax and derived data for an enzyme reaction.",FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0334,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate Km, Vmax and derived data for an enzyme reaction.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0335,Formatting,File reformatting|File format conversion|Format conversion|Reformatting|File formatting,Reformat a file of data (or equivalent entity in memory).,FALSE,,,http://edamontology.org/operation_2409,,beta12orEarlier,,,,,,,,,,,,operation_0335,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reformat a file of data (or equivalent entity in memory).,File reformatting|File format conversion|Format conversion|Reformatting|File formatting,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0336,Format validation,File format validation,Test and validate the format and content of a data file.,FALSE,,,http://edamontology.org/operation_2428,,beta12orEarlier,,,,,,,,,,,,operation_0336,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Test and validate the format and content of a data file.,File format validation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0337,Visualisation,Rendering,"Visualise, plot or render (graphically) biomolecular data such as molecular sequences or structures.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_0337,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, plot or render (graphically) biomolecular data such as molecular sequences or structures.",Rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_0338,Sequence database search,,"Search a sequence database by sequence comparison and retrieve similar sequences.

sequences matching a given sequence motif or pattern, such as a Prosite pattern or regular expression.|This excludes direct retrieval methods (e.g. the dbfetch program).",FALSE,,,http://edamontology.org/operation_2421|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0338,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search a sequence database by sequence comparison and retrieve similar sequences.

sequences matching a given sequence motif or pattern, such as a Prosite pattern or regular expression.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0339,Structure database search,,"Search a tertiary structure database, typically by sequence and/or structure comparison, or some other means, and retrieve structures and associated data.",FALSE,,,http://edamontology.org/operation_2421,,beta12orEarlier,,,,,,,,,,,,operation_0339,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search a tertiary structure database, typically by sequence and/or structure comparison, or some other means, and retrieve structures and associated data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0340,Protein secondary database search,,Search a secondary protein database (of classification information) to assign a protein sequence(s) to a known protein family or group.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0340,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search a secondary protein database (of classification information) to assign a protein sequence(s) to a known protein family or group.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3092,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0341,Motif database search,,Screen a sequence against a motif or pattern database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0341,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0253,,,,,Screen a sequence against a motif or pattern database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0342,Sequence profile database search,,Search a database of sequence profiles with a query sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0342,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0239,,,,,Search a database of sequence profiles with a query sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/operation_0343,Transmembrane protein database search,,"Search a database of transmembrane proteins, for example for sequence or structural similarities.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0343,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2421,,,,,"Search a database of transmembrane proteins, for example for sequence or structural similarities.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0344,Sequence retrieval (by code),,Query a database and retrieve sequences with a given entry code or accession number.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0344,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a database and retrieve sequences with a given entry code or accession number.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0345,Sequence retrieval (by keyword),,Query a database and retrieve sequences containing a given keyword.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0345,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a database and retrieve sequences containing a given keyword.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0346,Sequence similarity search,Sequence database search (by sequence)|Structure database search (by sequence),Search a sequence database and retrieve sequences that are similar to a query sequence.,FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_0338|http://edamontology.org/operation_0339,,beta12orEarlier,,,,,,,,,,,,operation_0346,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search a sequence database and retrieve sequences that are similar to a query sequence.,,Sequence database search (by sequence)|Structure database search (by sequence),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0347,Sequence database search (by motif or pattern),,"Search a sequence database and retrieve sequences matching a given sequence motif or pattern, such as a Prosite pattern or regular expression.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0347,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search a sequence database and retrieve sequences matching a given sequence motif or pattern, such as a Prosite pattern or regular expression.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0239,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0348,Sequence database search (by amino acid composition),,Search a sequence database and retrieve sequences of a given amino acid composition.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0348,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0338,,,,,Search a sequence database and retrieve sequences of a given amino acid composition.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0349,Sequence database search (by property),,"Search a sequence database and retrieve sequences with a specified property, typically a physicochemical or compositional property.",FALSE,,,http://edamontology.org/operation_0338,,beta12orEarlier,,,,,,,,,,,,operation_0349,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search a sequence database and retrieve sequences with a specified property, typically a physicochemical or compositional property.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0350,Sequence database search (by sequence using word-based methods),,"Search a sequence database and retrieve sequences that are similar to a query sequence using a word-based method.|Word-based methods (for example BLAST, gapped BLAST, MEGABLAST, WU-BLAST etc.) are usually quicker than alignment-based methods. They may or may not handle gaps.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0350,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0346,,,,,Search a sequence database and retrieve sequences that are similar to a query sequence using a word-based method.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0351,Sequence database search (by sequence using profile-based methods),,"Search a sequence database and retrieve sequences that are similar to a query sequence using a sequence profile-based method, or with a supplied profile as query.|This includes tools based on PSI-BLAST.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0351,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0346,,,,,"Search a sequence database and retrieve sequences that are similar to a query sequence using a sequence profile-based method, or with a supplied profile as query.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0352,Sequence database search (by sequence using local alignment-based methods),,Search a sequence database for sequences that are similar to a query sequence using a local alignment-based method.|This includes tools based on the Smith-Waterman algorithm or FASTA.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0352,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0346,,,,,Search a sequence database for sequences that are similar to a query sequence using a local alignment-based method.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0353,Sequence database search (by sequence using global alignment-based methods),,Search sequence(s) or a sequence database for sequences that are similar to a query sequence using a global alignment-based method.|This includes tools based on the Needleman and Wunsch algorithm.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0353,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0346,,,,,Search sequence(s) or a sequence database for sequences that are similar to a query sequence using a global alignment-based method.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0354,Sequence database search (by sequence for primer sequences),,Search a DNA database (for example a database of conserved sequence tags) for matches to Sequence-Tagged Site (STS) primer sequences.|STSs are genetic markers that are easily detected by the polymerase chain reaction (PCR) using specific primers.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0354,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0346,,,,,Search a DNA database (for example a database of conserved sequence tags) for matches to Sequence-Tagged Site (STS) primer sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0355,Sequence database search (by molecular weight),,"Search sequence(s) or a sequence database for sequences which match a set of peptide masses, for example a peptide mass fingerprint from mass spectrometry.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0355,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search sequence(s) or a sequence database for sequences which match a set of peptide masses, for example a peptide mass fingerprint from mass spectrometry.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2929,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0356,Sequence database search (by isoelectric point),,Search sequence(s) or a sequence database for sequences of a given isoelectric point.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0356,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0338,,,,,Search sequence(s) or a sequence database for sequences of a given isoelectric point.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0357,Structure retrieval (by code),,Query a tertiary structure database and retrieve entries with a given entry code or accession number.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0357,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a tertiary structure database and retrieve entries with a given entry code or accession number.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0358,Structure retrieval (by keyword),,Query a tertiary structure database and retrieve entries containing a given keyword.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0358,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a tertiary structure database and retrieve entries containing a given keyword.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0359,Structure database search (by sequence),,Search a tertiary structure database and retrieve structures with a sequence similar to a query sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0359,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search a tertiary structure database and retrieve structures with a sequence similar to a query sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0346,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0360,Structural similarity search,Structure database search (by structure)|Structure retrieval by structure,Search a database of molecular structure and retrieve structures that are similar to a query structure.,FALSE,,,http://edamontology.org/operation_2483|http://edamontology.org/operation_0339,,beta12orEarlier,,,,,,,,,,,,operation_0360,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search a database of molecular structure and retrieve structures that are similar to a query structure.,Structure database search (by structure)|Structure retrieval by structure,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0361,Sequence annotation,,Annotate a molecular sequence record with terms from a controlled vocabulary.,FALSE,,,http://edamontology.org/operation_0226,,beta12orEarlier,,,,,,,,,,,,operation_0361,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotate a molecular sequence record with terms from a controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0362,Genome annotation,Metagenome annotation,Annotate a genome sequence with terms from a controlled vocabulary.,FALSE,,,http://edamontology.org/operation_0361,,beta12orEarlier,,,,,,,,,,,,operation_0362,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotate a genome sequence with terms from a controlled vocabulary.,,Metagenome annotation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0363,Nucleic acid sequence reverse and complement,,Generate the reverse and / or complement of a nucleotide sequence.,FALSE,,,http://edamontology.org/operation_2513,,beta12orEarlier,,,,,,,,,,,,operation_0363,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate the reverse and / or complement of a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0364,Random sequence generation,,"Generate a random sequence, for example, with a specific character composition.",FALSE,,,http://edamontology.org/operation_0230,,beta12orEarlier,,,,,,,,,,,,operation_0364,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a random sequence, for example, with a specific character composition.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0365,Nucleic acid restriction digest,,Generate digest fragments for a nucleotide sequence containing restriction sites.,FALSE,,,http://edamontology.org/operation_0262|http://edamontology.org/operation_2513,,beta12orEarlier,,,,,,,,,,,,operation_0365,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate digest fragments for a nucleotide sequence containing restriction sites.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0366,Protein sequence cleavage,,Cleave a protein sequence into peptide fragments (by enzymatic or chemical cleavage) and calculate the fragment masses.,FALSE,,,http://edamontology.org/operation_2514|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cleave a protein sequence into peptide fragments (by enzymatic or chemical cleavage) and calculate the fragment masses.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0367,Sequence mutation and randomisation,,Mutate a molecular sequence a specified amount or shuffle it to produce a randomised sequence with the same overall composition.,FALSE,,,http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0367,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mutate a molecular sequence a specified amount or shuffle it to produce a randomised sequence with the same overall composition.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0368,Sequence masking,,"Mask characters in a molecular sequence (replacing those characters with a mask character).|For example, SNPs or repeats in a DNA sequence might be masked.",FALSE,,,http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0368,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mask characters in a molecular sequence (replacing those characters with a mask character).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0369,Sequence cutting,,Cut (remove) characters or a region from a molecular sequence.,FALSE,,,http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0369,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cut (remove) characters or a region from a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0370,Restriction site creation,,"Create (or remove) restriction sites in sequences, for example using silent mutations.",FALSE,,,http://edamontology.org/operation_0231,,beta12orEarlier,,,,,,,,,,,,operation_0370,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Create (or remove) restriction sites in sequences, for example using silent mutations.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0371,DNA translation,,Translate a DNA sequence into protein.,FALSE,,,http://edamontology.org/operation_0233,,beta12orEarlier,,,,,,,,,,,,operation_0371,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Translate a DNA sequence into protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0372,DNA transcription,,Transcribe a nucleotide sequence into mRNA sequence(s).,FALSE,,,http://edamontology.org/operation_0233,,beta12orEarlier,,,,,,,,,,,,operation_0372,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Transcribe a nucleotide sequence into mRNA sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0377,Sequence composition calculation (nucleic acid),,Calculate base frequency or word composition of a nucleotide sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0377,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate base frequency or word composition of a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0236,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0378,Sequence composition calculation (protein),,Calculate amino acid frequency or word composition of a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0378,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate amino acid frequency or word composition of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0236,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0379,Repeat sequence detection,,Find (and possibly render) short repetitive subsequences (repeat sequences) in (typically nucleotide) sequences.,FALSE,,,http://edamontology.org/operation_0415|http://edamontology.org/operation_0237,,beta12orEarlier,,,,,,,,,,,,operation_0379,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find (and possibly render) short repetitive subsequences (repeat sequences) in (typically nucleotide) sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0380,Repeat sequence organisation analysis,,Analyse repeat sequence organisation such as periodicity.,FALSE,,,http://edamontology.org/operation_0237|http://edamontology.org/operation_0236,,beta12orEarlier,,,,,,,,,,,,operation_0380,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse repeat sequence organisation such as periodicity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0383,Protein hydropathy calculation (from structure),,"Analyse the hydrophobic, hydrophilic or charge properties of a protein structure.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0383,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse the hydrophobic, hydrophilic or charge properties of a protein structure.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2574,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0384,Accessible surface calculation,Protein solvent accessibility calculation,"Calculate solvent accessible or buried surface areas in protein or other molecular structures.|Solvent accessibility might be calculated for the backbone, sidechain and total (backbone plus sidechain).",FALSE,,,http://edamontology.org/operation_3351,,beta12orEarlier,,,,,,,,,,,,operation_0384,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:AtomAccessibilitySolventPlus|WHATIF:AtomAccessibilitySolvent,Calculate solvent accessible or buried surface areas in protein or other molecular structures.,,Protein solvent accessibility calculation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0385,Protein hydropathy cluster calculation,,Identify clusters of hydrophobic or charged residues in a protein structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0385,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify clusters of hydrophobic or charged residues in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0393,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0386,Protein dipole moment calculation,,Calculate whether a protein structure has an unusually large net charge (dipole moment).,FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0386,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate whether a protein structure has an unusually large net charge (dipole moment).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0387,Molecular surface calculation,Protein atom surface calculation|Protein surface and interior calculation|Protein residue surface calculation|Protein surface calculation,Calculate the molecular surface area in proteins and other macromolecules.,FALSE,,,http://edamontology.org/operation_3351,,beta12orEarlier,,,,,,,,,,,,operation_0387,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:TotAccessibilityMolecular|WHATIF:TotAccessibilitySolvent|WHATIF:AtomAccessibilityMolecularPlus|WHATIF:ResidueAccessibilitySolvent|WHATIF:AtomAccessibilityMolecular|WHATIF:ResidueAccessibilityMolecular|WHATIF:ResidueAccessibilityVacuum|WHATIF:ResidueAccessibilityVacuumMolecular,Calculate the molecular surface area in proteins and other macromolecules.,,Protein atom surface calculation|Protein surface and interior calculation|Protein residue surface calculation|Protein surface calculation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0388,Protein binding site prediction (from structure),,"Identify or predict catalytic residues, active sites or other ligand-binding sites in protein structures.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0388,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict catalytic residues, active sites or other ligand-binding sites in protein structures.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2575,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0389,Protein-nucleic acid binding site analysis,,Analyse RNA or DNA-binding sites in protein structure.,FALSE,,,http://edamontology.org/operation_2949,,beta12orEarlier,,,,,,,,,,,,operation_0389,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse RNA or DNA-binding sites in protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0390,Protein peeling,,Decompose a structure into compact or globular fragments (protein peeling).,FALSE,,,http://edamontology.org/operation_0246,,beta12orEarlier,,,,,,,,,,,,operation_0390,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Decompose a structure into compact or globular fragments (protein peeling).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0391,Protein distance matrix calculation,,Calculate a matrix of distance between residues (for example the C-alpha atoms) in a protein structure.,FALSE,,,http://edamontology.org/operation_2950,,beta12orEarlier,,,,,,,,,,,,operation_0391,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a matrix of distance between residues (for example the C-alpha atoms) in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0392,Protein contact map calculation,,Calculate a residue contact map (typically all-versus-all inter-residue contacts) for a protein structure.,FALSE,,,http://edamontology.org/operation_0391,,beta12orEarlier,,,,,,,,,,,,operation_0392,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a residue contact map (typically all-versus-all inter-residue contacts) for a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0393,Residue cluster calculation,,"Calculate clusters of contacting residues in protein structures.|This includes for example clusters of hydrophobic or charged residues, or clusters of contacting residues which have a key structural or functional role.",FALSE,,,http://edamontology.org/operation_2950,,beta12orEarlier,,,,,,,,,,,,operation_0393,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate clusters of contacting residues in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0394,Hydrogen bond calculation,,"Identify potential hydrogen bonds between amino acids and other groups.|The output might include the atoms involved in the bond, bond geometric parameters and bond enthalpy.",FALSE,,,http://edamontology.org/operation_0248,,beta12orEarlier,,,,,,,,,,,,operation_0394,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowHydrogenBonds|WHATIF:ShowHydrogenBondsM|WHATIF:HasHydrogenBonds,Identify potential hydrogen bonds between amino acids and other groups.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0395,Residue non-canonical interaction detection,,Calculate non-canonical atomic interactions in protein structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0395,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0249,,,,,Calculate non-canonical atomic interactions in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0396,Ramachandran plot calculation,,Calculate a Ramachandran plot of a protein structure.,FALSE,,,http://edamontology.org/operation_0249,,beta12orEarlier,,,,,,,,,,,,operation_0396,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a Ramachandran plot of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0397,Ramachandran plot validation,,Validate a Ramachandran plot of a protein structure.,FALSE,,,http://edamontology.org/operation_1844,,beta12orEarlier,,,,,,,,,,,,operation_0397,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Validate a Ramachandran plot of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0398,Protein molecular weight calculation,,Calculate the molecular weight of a protein sequence or fragments.,FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0398,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the molecular weight of a protein sequence or fragments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0399,Protein extinction coefficient calculation,,Predict extinction coefficients or optical density of a protein sequence.,FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0399,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict extinction coefficients or optical density of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0400,Protein pH-dependent property calculation,,Calculate pH-dependent properties from pKa calculations of a protein sequence.,FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_0400,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate pH-dependent properties from pKa calculations of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0401,Protein hydropathy calculation (from sequence),,Hydropathy calculation on a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0401,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Hydropathy calculation on a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2574,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0402,Protein titration curve plotting,,Plot a protein titration curve.,FALSE,,,http://edamontology.org/operation_0400|http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_0402,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Plot a protein titration curve.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0403,Protein isoelectric point calculation,,Calculate isoelectric point of a protein sequence.,FALSE,,,http://edamontology.org/operation_0400,,beta12orEarlier,,,,,,,,,,,,operation_0403,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate isoelectric point of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0404,Protein hydrogen exchange rate calculation,,Estimate hydrogen exchange rate of a protein sequence.,FALSE,,,http://edamontology.org/operation_0400,,beta12orEarlier,,,,,,,,,,,,operation_0404,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Estimate hydrogen exchange rate of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0405,Protein hydrophobic region calculation,,Calculate hydrophobic or hydrophilic / charged regions of a protein sequence.,FALSE,,,http://edamontology.org/operation_2574,,beta12orEarlier,,,,,,,,,,,,operation_0405,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate hydrophobic or hydrophilic / charged regions of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0406,Protein aliphatic index calculation,,Calculate aliphatic index (relative volume occupied by aliphatic side chains) of a protein.,FALSE,,,http://edamontology.org/operation_2574,,beta12orEarlier,,,,,,,,,,,,operation_0406,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate aliphatic index (relative volume occupied by aliphatic side chains) of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0407,Protein hydrophobic moment plotting,,Calculate the hydrophobic moment of a peptide sequence and recognize amphiphilicity.|Hydrophobic moment is a peptides hydrophobicity measured for different angles of rotation.,FALSE,,,http://edamontology.org/operation_2574|http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_0407,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the hydrophobic moment of a peptide sequence and recognize amphiphilicity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0408,Protein globularity prediction,,"Predict the stability or globularity of a protein sequence, whether it is intrinsically unfolded etc.",FALSE,,,http://edamontology.org/operation_2574,,beta12orEarlier,,,,,,,,,,,,operation_0408,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict the stability or globularity of a protein sequence, whether it is intrinsically unfolded etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0409,Protein solubility prediction,,Predict the solubility or atomic solvation energy of a protein sequence.,FALSE,,,http://edamontology.org/operation_2574,,beta12orEarlier,,,,,,,,,,,,operation_0409,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the solubility or atomic solvation energy of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0410,Protein crystallizability prediction,,Predict crystallizability of a protein sequence.,FALSE,,,http://edamontology.org/operation_2574,,beta12orEarlier,,,,,,,,,,,,operation_0410,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict crystallizability of a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0411,Protein signal peptide detection (eukaryotes),,Detect or predict signal peptides (and typically predict subcellular localisation) of eukaryotic proteins.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,(jison)Too fine-grained.,,,,,,,,,,operation_0411,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect or predict signal peptides (and typically predict subcellular localisation) of eukaryotic proteins.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0418,,,,,,,,,,,,,1.17,http://edamontology.org/operation_0418,,,,,,
http://edamontology.org/operation_0412,Protein signal peptide detection (bacteria),,Detect or predict signal peptides (and typically predict subcellular localisation) of bacterial proteins.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,(jison)Too fine-grained.,,,,,,,,,,operation_0412,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect or predict signal peptides (and typically predict subcellular localisation) of bacterial proteins.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0418,,,,,,,,,,,,,1.17,http://edamontology.org/operation_0418,,,,,,
http://edamontology.org/operation_0413,MHC peptide immunogenicity prediction,,"Predict MHC class I or class II binding peptides, promiscuous binding peptides, immunogenicity etc.","true
",,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0413,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict MHC class I or class II binding peptides, promiscuous binding peptides, immunogenicity etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0252,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0414,Protein feature prediction (from sequence),,"Predict, recognise and identify positional features in protein sequences such as functional sites or regions and secondary structure.|Methods typically involve scanning for known motifs, patterns and regular expressions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0414,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_3092,,,,,"Predict, recognise and identify positional features in protein sequences such as functional sites or regions and secondary structure.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0415,Nucleic acid feature detection,Sequence feature detection (nucleic acid)|Nucleic acid site detection|Nucleic acid feature recognition|Nucleic acid feature prediction|Nucleic acid site recognition|Nucleic acid site prediction,"Predict, recognise and identify features in nucleotide sequences such as functional sites or regions, typically by scanning for known motifs, patterns and regular expressions.|Methods typically involve scanning for known motifs, patterns and regular expressions.",FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0415,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise and identify features in nucleotide sequences such as functional sites or regions, typically by scanning for known motifs, patterns and regular expressions.",Sequence feature detection (nucleic acid),Nucleic acid site detection|Nucleic acid feature recognition|Nucleic acid feature prediction|Nucleic acid site recognition|Nucleic acid site prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0416,Epitope mapping,,Predict antigenic determinant sites (epitopes) in protein sequences.|Epitope mapping is commonly done during vaccine design.,FALSE,,,http://edamontology.org/operation_2429|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0416,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict antigenic determinant sites (epitopes) in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0417,Protein post-translation modification site prediction,,"Predict post-translation modification sites in protein sequences.|Methods might predict sites of methylation, N-terminal myristoylation, N-terminal acetylation, sumoylation, palmitoylation, phosphorylation, sulfation, glycosylation, glycosylphosphatidylinositol (GPI) modification sites (GPI lipid anchor signals) etc.",FALSE,,,http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0417,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict post-translation modification sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0418,Protein signal peptide detection,,"Detect or predict signal peptides and signal peptide cleavage sites in protein sequences.|Methods might use sequence motifs and features, amino acid composition, profiles, machine-learned classifiers, etc.",FALSE,,,http://edamontology.org/operation_2489|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0418,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect or predict signal peptides and signal peptide cleavage sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0419,Protein binding site prediction (from sequence),,"Predict catalytic residues, active sites or other ligand-binding sites in protein sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0419,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict catalytic residues, active sites or other ligand-binding sites in protein sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2575,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0420,Protein-nucleic acid binding prediction,Zinc finger prediction,Predict RNA and DNA-binding binding sites in protein sequences.|This includes methods that predict and optimise zinc finger protein domains for DNA/RNA binding (for example for transcription factors and nucleases).,FALSE,,,http://edamontology.org/operation_2575,,beta12orEarlier,,,,,,,,,,,,operation_0420,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict RNA and DNA-binding binding sites in protein sequences.,,Zinc finger prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0421,Protein folding site prediction,,"Predict protein sites that are key to protein folding, such as possible sites of nucleation or stabilisation.",FALSE,,,http://edamontology.org/operation_2415|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0421,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict protein sites that are key to protein folding, such as possible sites of nucleation or stabilisation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0422,Protein cleavage site prediction,,Detect or predict cleavage sites (enzymatic or chemical) in protein sequences.,FALSE,,,http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0422,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect or predict cleavage sites (enzymatic or chemical) in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0423,Epitope mapping (MHC Class I),,Predict epitopes that bind to MHC class I molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0423,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict epitopes that bind to MHC class I molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0416,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0424,Epitope mapping (MHC Class II),,Predict epitopes that bind to MHC class II molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0424,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict epitopes that bind to MHC class II molecules.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,http://edamontology.org/operation_0416,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_0425,Whole gene prediction,,"Detect, predict and identify whole gene structure in DNA sequences. This includes protein coding regions, exon-intron structure, regulatory regions etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0425,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect, predict and identify whole gene structure in DNA sequences. This includes protein coding regions, exon-intron structure, regulatory regions etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2454,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0426,Gene component prediction,,"Detect, predict and identify genetic elements such as promoters, coding regions, splice sites, etc in DNA sequences.|Methods for gene prediction might be ab initio, based on phylogenetic comparisons, use motifs, sequence features, support vector machine, alignment etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0426,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect, predict and identify genetic elements such as promoters, coding regions, splice sites, etc in DNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2454,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0427,Transposon prediction,,"Detect or predict transposons, retrotransposons / retrotransposition signatures etc.",FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0427,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect or predict transposons, retrotransposons / retrotransposition signatures etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0428,PolyA signal detection,,Detect polyA signals in nucleotide sequences.,FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0428,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect polyA signals in nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0429,Quadruplex formation site detection,Quadruplex structure prediction,Detect quadruplex-forming motifs in nucleotide sequences.|Quadruplex (4-stranded) structures are formed by guanine-rich regions and are implicated in various important biological processes and as therapeutic targets.,FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0429,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect quadruplex-forming motifs in nucleotide sequences.,Quadruplex structure prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0430,CpG island and isochore detection,CpG island and isochores detection|CpG island and isochores rendering,"Find CpG rich regions in a nucleotide sequence or isochores in genome sequences.|An isochore is long region (> 3 KB) of DNA with very uniform GC content, in contrast to the rest of the genome. Isochores tend tends to have more genes, higher local melting or denaturation temperatures, and different flexibility. Methods might calculate fractional GC content or variation of GC content, predict methylation status of CpG islands etc. This includes methods that visualise CpG rich regions in a nucleotide sequence, for example plot isochores in a genome sequence.",FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0430,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find CpG rich regions in a nucleotide sequence or isochores in genome sequences.,CpG island and isochores detection|CpG island and isochores rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0431,Restriction site recognition,,"Find and identify restriction enzyme cleavage sites (restriction sites) in (typically) DNA sequences, for example to generate a restriction map.",FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0431,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Find and identify restriction enzyme cleavage sites (restriction sites) in (typically) DNA sequences, for example to generate a restriction map.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0432,Nucleosome formation or exclusion sequence prediction,,Identify or predict nucleosome exclusion sequences (nucleosome free regions) in DNA.,FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0432,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict nucleosome exclusion sequences (nucleosome free regions) in DNA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0433,Splice site prediction,,"Identify, predict or analyse splice sites in nucleotide sequences.|Methods might require a pre-mRNA or genomic DNA sequence.",FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_0433,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify, predict or analyse splice sites in nucleotide sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0434,Integrated gene prediction,,Predict whole gene structure using a combination of multiple methods to achieve better predictions.,FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0434,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict whole gene structure using a combination of multiple methods to achieve better predictions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0435,Operon prediction,,"Find operons (operators, promoters and genes) in bacteria genes.",FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0435,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Find operons (operators, promoters and genes) in bacteria genes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0436,Coding region prediction,ORF finding|ORF prediction,Predict protein-coding regions (CDS or exon) or open reading frames in nucleotide sequences.,FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0436,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict protein-coding regions (CDS or exon) or open reading frames in nucleotide sequences.,ORF finding|ORF prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0437,Selenocysteine insertion sequence (SECIS) prediction,,Predict selenocysteine insertion sequence (SECIS) in a DNA sequence.|SECIS elements are around 60 nucleotides in length with a stem-loop structure directs the cell to translate UGA codons as selenocysteines.,FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0437,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict selenocysteine insertion sequence (SECIS) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0438,Regulatory element prediction,Transcription regulatory element prediction|Translational regulatory element prediction,"Identify or predict transcription regulatory motifs, patterns, elements or regions in DNA sequences.|This includes promoters, enhancers, silencers and boundary elements / insulators, regulatory protein or transcription factor binding sites etc. Methods might be specific to a particular genome and use motifs, word-based / grammatical methods, position-specific frequency matrices, discriminative pattern analysis etc.",FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0438,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict transcription regulatory motifs, patterns, elements or regions in DNA sequences.",,Transcription regulatory element prediction|Translational regulatory element prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0439,Translation initiation site prediction,,"Predict translation initiation sites, possibly by searching a database of sites.",FALSE,,,http://edamontology.org/operation_0436,,beta12orEarlier,,,,,,,,,,,,operation_0439,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict translation initiation sites, possibly by searching a database of sites.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0440,Promoter prediction,,"Identify or predict whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in DNA sequences.|Methods might recognize CG content, CpG islands, splice sites, polyA signals etc.",FALSE,,,http://edamontology.org/operation_0438,,beta12orEarlier,,,,,,,,,,,,operation_0440,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in DNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0441,Transcription regulatory element prediction (DNA-cis),,"Identify, predict or analyse cis-regulatory elements (TATA box, Pribnow box, SOS box, CAAT box, CCAAT box, operator etc.) in DNA sequences.|Cis-regulatory elements (cis-elements) regulate the expression of genes located on the same strand. Cis-elements are found in the 5' promoter region of the gene, in an intron, or in the 3' untranslated region. Cis-elements are often binding sites of one or more trans-acting factors.",FALSE,,,http://edamontology.org/operation_0438,,beta12orEarlier,,,,,,,,,,,,operation_0441,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify, predict or analyse cis-regulatory elements (TATA box, Pribnow box, SOS box, CAAT box, CCAAT box, operator etc.) in DNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0442,Transcription regulatory element prediction (RNA-cis),,"Identify, predict or analyse cis-regulatory elements (for example riboswitches) in RNA sequences.|Cis-regulatory elements (cis-elements) regulate genes located on the same strand from which the element was transcribed. A riboswitch is a region of an mRNA molecule that bind a small target molecule that regulates the gene's activity.",FALSE,,,http://edamontology.org/operation_0438,,beta12orEarlier,,,,,,,,,,,,operation_0442,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify, predict or analyse cis-regulatory elements (for example riboswitches) in RNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0443,Transcription regulatory element prediction (trans),Functional RNA identification,Identify or predict functional RNA sequences with a gene regulatory role (trans-regulatory elements) or targets.|Trans-regulatory elements regulate genes distant from the gene from which they were transcribed.,FALSE,,,http://edamontology.org/operation_0438,,beta12orEarlier,,,,,,,,,,,,operation_0443,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict functional RNA sequences with a gene regulatory role (trans-regulatory elements) or targets.,Functional RNA identification,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0444,Matrix/scaffold attachment site prediction,,Identify matrix/scaffold attachment regions (MARs/SARs) in DNA sequences.|MAR/SAR sites often flank a gene or gene cluster and are found nearby cis-regulatory sequences. They might contribute to transcription regulation.,FALSE,,,http://edamontology.org/operation_0438,,beta12orEarlier,,,,,,,,,,,,operation_0444,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify matrix/scaffold attachment regions (MARs/SARs) in DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0445,Transcription factor binding site prediction,,Identify or predict transcription factor binding sites in DNA sequences.,FALSE,,,http://edamontology.org/operation_0440,,beta12orEarlier,,,,,,,,,,,,operation_0445,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict transcription factor binding sites in DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0446,Exonic splicing enhancer prediction,,Identify or predict exonic splicing enhancers (ESE) in exons.|An exonic splicing enhancer (ESE) is 6-base DNA sequence motif in an exon that enhances or directs splicing of pre-mRNA or hetero-nuclear RNA (hnRNA) into mRNA.,FALSE,,,http://edamontology.org/operation_0440,,beta12orEarlier,,,,,,,,,,,,operation_0446,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict exonic splicing enhancers (ESE) in exons.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0447,Sequence alignment validation,Sequence alignment quality evaluation,Evaluate molecular sequence alignment accuracy.|Evaluation might be purely sequence-based or use structural information.,FALSE,,,http://edamontology.org/operation_2428|http://edamontology.org/operation_0258,,beta12orEarlier,,,,,,,,,,,,operation_0447,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Evaluate molecular sequence alignment accuracy.,Sequence alignment quality evaluation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0448,Sequence alignment analysis (conservation),Residue conservation analysis,"Analyse character conservation in a molecular sequence alignment, for example to derive a consensus sequence.|Use this concept for methods that calculate substitution rates, estimate relative site variability, identify sites with biased properties, derive a consensus sequence, or identify highly conserved or very poorly conserved sites, regions, blocks etc.",FALSE,,,http://edamontology.org/operation_0258,,beta12orEarlier,,,,,,,,,,,,operation_0448,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse character conservation in a molecular sequence alignment, for example to derive a consensus sequence.",Residue conservation analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0449,Sequence alignment analysis (site correlation),,Analyse correlations between sites in a molecular sequence alignment.|This is typically done to identify possible covarying positions and predict contacts or structural constraints in protein structures.,FALSE,,,http://edamontology.org/operation_3465|http://edamontology.org/operation_0258,,beta12orEarlier,,,,,,,,,,,,operation_0449,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse correlations between sites in a molecular sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0450,Chimeric sequence detection,Sequence alignment analysis (chimeric sequence detection),Detects chimeric sequences (chimeras) from a sequence alignment.|A chimera includes regions from two or more phylogenetically distinct sequences. They are usually artifacts of PCR and are thought to occur when a prematurely terminated amplicon reanneals to another DNA strand and is subsequently copied to completion in later PCR cycles.,FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0450,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detects chimeric sequences (chimeras) from a sequence alignment.,Sequence alignment analysis (chimeric sequence detection),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0451,Recombination detection,Sequence alignment analysis (recombination detection),"Detect recombination (hotspots and coldspots) and identify recombination breakpoints in a sequence alignment.|Tools might use a genetic algorithm, quartet-mapping, bootscanning, graphical methods, random forest model and so on.",FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_0451,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect recombination (hotspots and coldspots) and identify recombination breakpoints in a sequence alignment.,Sequence alignment analysis (recombination detection),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0452,Indel detection,Sequence alignment analysis (indel detection)|Indel discovery,"Identify insertion, deletion and duplication events from a sequence alignment.|Tools might use a genetic algorithm, quartet-mapping, bootscanning, graphical methods, random forest model and so on.",FALSE,,,http://edamontology.org/operation_2478|http://edamontology.org/operation_3202,,beta12orEarlier,,,,,,,,,,,,operation_0452,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify insertion, deletion and duplication events from a sequence alignment.",Sequence alignment analysis (indel detection)|Indel discovery,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0453,Nucleosome formation potential prediction,,Predict nucleosome formation potential of DNA sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0453,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0432,,,,,Predict nucleosome formation potential of DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0455,Nucleic acid thermodynamic property calculation,,"Calculate a thermodynamic property of DNA or DNA/RNA, such as melting temperature, enthalpy and entropy.",FALSE,,,http://edamontology.org/operation_0262,,beta12orEarlier,,,,,,,,,,,,operation_0455,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate a thermodynamic property of DNA or DNA/RNA, such as melting temperature, enthalpy and entropy.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0456,Nucleic acid melting profile plotting,,Calculate and plot a DNA or DNA/RNA melting profile.|A melting profile is used to visualise and analyse partly melted DNA conformations.,FALSE,,,http://edamontology.org/operation_0262|http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_0456,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate and plot a DNA or DNA/RNA melting profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0457,Nucleic acid stitch profile plotting,,Calculate and plot a DNA or DNA/RNA stitch profile.|A stitch profile represents the alternative conformations that partly melted DNA can adopt in a temperature range.,FALSE,,,http://edamontology.org/operation_0456,,beta12orEarlier,,,,,,,,,,,,operation_0457,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate and plot a DNA or DNA/RNA stitch profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0458,Nucleic acid melting curve plotting,,Calculate and plot a DNA or DNA/RNA melting curve.,FALSE,,,http://edamontology.org/operation_0456,,beta12orEarlier,,,,,,,,,,,,operation_0458,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate and plot a DNA or DNA/RNA melting curve.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0459,Nucleic acid probability profile plotting,,Calculate and plot a DNA or DNA/RNA probability profile.,FALSE,,,http://edamontology.org/operation_0456,,beta12orEarlier,,,,,,,,,,,,operation_0459,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate and plot a DNA or DNA/RNA probability profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0460,Nucleic acid temperature profile plotting,,Calculate and plot a DNA or DNA/RNA temperature profile.,FALSE,,,http://edamontology.org/operation_0456,,beta12orEarlier,,,,,,,,,,,,operation_0460,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate and plot a DNA or DNA/RNA temperature profile.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0461,Nucleic acid curvature calculation,,Calculate curvature and flexibility / stiffness of a nucleotide sequence.|This includes properties such as.,FALSE,,,http://edamontology.org/operation_0262,,beta12orEarlier,,,,,,,,,,,,operation_0461,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate curvature and flexibility / stiffness of a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0463,microRNA detection,,Identify or predict microRNA sequences (miRNA) and precursors or microRNA targets / binding sites in a DNA sequence.,FALSE,,,http://edamontology.org/operation_0443,,beta12orEarlier,,,,,,,,,,,,operation_0463,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict microRNA sequences (miRNA) and precursors or microRNA targets / binding sites in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0464,tRNA gene prediction,,Identify or predict tRNA genes in genomic sequences (tRNA).,FALSE,,,http://edamontology.org/operation_2454,,beta12orEarlier,,,,,,,,,,,,operation_0464,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict tRNA genes in genomic sequences (tRNA).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0465,siRNA binding specificity prediction,,"Assess binding specificity of putative siRNA sequence(s), for example for a functional assay, typically with respect to designing specific siRNA sequences.",FALSE,,,http://edamontology.org/operation_0443,,beta12orEarlier,,,,,,,,,,,,operation_0465,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Assess binding specificity of putative siRNA sequence(s), for example for a functional assay, typically with respect to designing specific siRNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0467,Protein secondary structure prediction (integrated),,Predict secondary structure of protein sequence(s) using multiple methods to achieve better predictions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0467,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict secondary structure of protein sequence(s) using multiple methods to achieve better predictions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0267,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0267,,,,,,
http://edamontology.org/operation_0468,Protein secondary structure prediction (helices),,Predict helical secondary structure of protein sequences.,FALSE,,,http://edamontology.org/operation_0267,,beta12orEarlier,,,,,,,,,,,,operation_0468,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict helical secondary structure of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0469,Protein secondary structure prediction (turns),,Predict turn structure (for example beta hairpin turns) of protein sequences.,FALSE,,,http://edamontology.org/operation_0267,,beta12orEarlier,,,,,,,,,,,,operation_0469,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict turn structure (for example beta hairpin turns) of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0470,Protein secondary structure prediction (coils),,"Predict open coils, non-regular secondary structure and intrinsically disordered / unstructured regions of protein sequences.",FALSE,,,http://edamontology.org/operation_0267,,beta12orEarlier,,,,,,,,,,,,operation_0470,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict open coils, non-regular secondary structure and intrinsically disordered / unstructured regions of protein sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0471,Disulfide bond prediction,,Predict cysteine bonding state and disulfide bond partners in protein sequences.,FALSE,,,http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_0471,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict cysteine bonding state and disulfide bond partners in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0472,GPCR prediction,G protein-coupled receptor (GPCR) prediction,Predict G protein-coupled receptors (GPCR).,FALSE,,,http://edamontology.org/operation_0269|http://edamontology.org/operation_0473,,beta12orEarlier,,,,,,,,,,,,operation_0472,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict G protein-coupled receptors (GPCR).,G protein-coupled receptor (GPCR) prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0473,GPCR analysis,G protein-coupled receptor (GPCR) analysis,Analyse G-protein coupled receptor proteins (GPCRs).,FALSE,,,http://edamontology.org/operation_0270,,beta12orEarlier,,,,,,,,,,,,operation_0473,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse G-protein coupled receptor proteins (GPCRs).,G protein-coupled receptor (GPCR) analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0474,Protein structure prediction,,Predict tertiary structure (backbone and side-chain conformation) of protein sequences.,FALSE,,,http://edamontology.org/operation_0271|http://edamontology.org/operation_3023|http://edamontology.org/operation_2502|http://edamontology.org/operation_2479,,beta12orEarlier,,,,,,,,,,,,operation_0474,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict tertiary structure (backbone and side-chain conformation) of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0475,Nucleic acid structure prediction,,Predict tertiary structure of DNA or RNA.|Methods might identify thermodynamically stable or evolutionarily conserved structures.,FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_2478|http://edamontology.org/operation_0271,,beta12orEarlier,,,,,,,,,,,,operation_0475,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict tertiary structure of DNA or RNA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0476,Ab initio structure prediction,de novo structure prediction,Predict tertiary structure of protein sequence(s) without homologs of known structure.,FALSE,,,http://edamontology.org/operation_0474,,beta12orEarlier,,,,,,,,,,,,operation_0476,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict tertiary structure of protein sequence(s) without homologs of known structure.,de novo structure prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0477,Protein modelling,Homology structure modelling|Comparative modelling|Protein structure comparative modelling|Homology modelling,"Build a three-dimensional protein model based on known (for example homologs) structures.|The model might be of a whole, part or aspect of protein structure. Molecular modelling methods might use sequence-structure alignment, structural templates, molecular dynamics, energy minimisation etc.",FALSE,,,http://edamontology.org/operation_2406|http://edamontology.org/operation_2426|http://edamontology.org/operation_0474,,beta12orEarlier,,,,,,,,,,,,operation_0477,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Build a three-dimensional protein model based on known (for example homologs) structures.,Homology structure modelling|Comparative modelling|Protein structure comparative modelling|Homology modelling,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0478,Molecular docking,Protein docking|Docking simulation,"Model the structure of a protein in complex with a small molecule or another macromolecule.|This includes protein-protein interactions, protein-nucleic acid, protein-ligand binding etc. Methods might predict whether the molecules are likely to bind in vivo, their conformation when bound, the strength of the interaction, possible mutations to achieve bonding and so on.",FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2492,,beta12orEarlier,,,,,,,,,,,,operation_0478,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Model the structure of a protein in complex with a small molecule or another macromolecule.,Protein docking|Docking simulation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0479,Protein modelling (backbone),,Model protein backbone conformation.|Methods might require a preliminary C(alpha) trace.,FALSE,,,http://edamontology.org/operation_0477,,beta12orEarlier,,,,,,,,,,,,operation_0479,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Model protein backbone conformation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0480,Protein modelling (side chains),,"Model, analyse or edit amino acid side chain conformation in protein structure, optimize side-chain packing, hydrogen bonding etc.|Methods might use a residue rotamer library.",FALSE,,,http://edamontology.org/operation_0477,,beta12orEarlier,,,,,,,,,,,,operation_0480,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Model, analyse or edit amino acid side chain conformation in protein structure, optimize side-chain packing, hydrogen bonding etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0481,Protein modelling (loops),,Model loop conformation in protein structures.,FALSE,,,http://edamontology.org/operation_0477,,beta12orEarlier,,,,,,,,,,,,operation_0481,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Model loop conformation in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0482,Protein-ligand docking,Ligand-binding simulation|Virtual ligand screening,Model protein-ligand (for example protein-peptide) binding using comparative modelling or other techniques.|Methods aim to predict the position and orientation of a ligand bound to a protein receptor or enzyme.,FALSE,,,http://edamontology.org/operation_0478,,beta12orEarlier,,,,,,,,,,,,operation_0482,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Model protein-ligand (for example protein-peptide) binding using comparative modelling or other techniques.,Ligand-binding simulation,Virtual ligand screening,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0483,Structured RNA prediction and optimisation,Nucleic acid folding family identification|RNA inverse folding,Predict or optimise RNA sequences (sequence pools) with likely secondary and tertiary structure for in vitro selection.,FALSE,,,http://edamontology.org/operation_3095,,beta12orEarlier,,,,,,,,,,,,operation_0483,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict or optimise RNA sequences (sequence pools) with likely secondary and tertiary structure for in vitro selection.,Nucleic acid folding family identification|RNA inverse folding,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0484,SNP detection,SNP discovery|Single nucleotide polymorphism detection,"Find single nucleotide polymorphisms (SNPs) between sequences.|This includes functional SNPs for large-scale genotyping purposes, disease-associated non-synonymous SNPs etc.",FALSE,,,http://edamontology.org/operation_0415|http://edamontology.org/operation_2478|http://edamontology.org/operation_3202,,beta12orEarlier,,,,,,,,,,,,operation_0484,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Find single nucleotide polymorphisms (SNPs) between sequences.,SNP discovery|Single nucleotide polymorphism detection,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0485,Radiation Hybrid Mapping,,Generate a physical (radiation hybrid) map of genetic markers in a DNA sequence using provided radiation hybrid (RH) scores for one or more markers.,FALSE,,,http://edamontology.org/operation_2944,,beta12orEarlier,,,,,,,,,,,,operation_0485,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a physical (radiation hybrid) map of genetic markers in a DNA sequence using provided radiation hybrid (RH) scores for one or more markers.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0486,Functional mapping,,Map the genetic architecture of dynamic complex traits.|This can involve characterisation of the underlying quantitative trait loci (QTLs) or nucleotides (QTNs).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0486,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0282,,,,,Map the genetic architecture of dynamic complex traits.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0487,Haplotype mapping,Haplotype inference|Haplotype map generation|Haplotype reconstruction,"Infer haplotypes, either alleles at multiple loci that are transmitted together on the same chromosome, or a set of single nucleotide polymorphisms (SNPs) on a single chromatid that are statistically associated.|Haplotype inference can help in population genetic studies and the identification of complex disease genes, , and is typically based on aligned single nucleotide polymorphism (SNP) fragments. Haplotype comparison is a useful way to characterize the genetic variation between individuals. An individual's haplotype describes which nucleotide base occurs at each position for a set of common SNPs. Tools might use combinatorial functions (for example parsimony) or a likelihood function or model with optimisation such as minimum error correction (MEC) model, expectation-maximisation algorithm (EM), genetic algorithm or Markov chain Monte Carlo (MCMC).",FALSE,,,http://edamontology.org/operation_0282|http://edamontology.org/operation_0283,,beta12orEarlier,,,,,,,,,,,,operation_0487,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Infer haplotypes, either alleles at multiple loci that are transmitted together on the same chromosome, or a set of single nucleotide polymorphisms (SNPs) on a single chromatid that are statistically associated.",Haplotype inference|Haplotype map generation|Haplotype reconstruction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0488,Linkage disequilibrium calculation,,Calculate linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome).|Linkage disequilibrium is identified where a combination of alleles (or genetic markers) occurs more or less frequently in a population than expected by chance formation of haplotypes.,FALSE,,,http://edamontology.org/operation_0283,,beta12orEarlier,,,,,,,,,,,,operation_0488,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0489,Genetic code prediction,,Predict genetic code from analysis of codon usage data.,FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_0489,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict genetic code from analysis of codon usage data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0490,Dotplot plotting,,Draw a dotplot of sequence similarities identified from word-matching or character comparison.,FALSE,,,http://edamontology.org/operation_0564|http://edamontology.org/operation_3441|http://edamontology.org/operation_0288,,beta12orEarlier,,,,,,,,,,,,operation_0490,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Draw a dotplot of sequence similarities identified from word-matching or character comparison.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0491,Pairwise sequence alignment,Pairwise alignment,"Align exactly two molecular sequences.|Methods might perform one-to-one, one-to-many or many-to-many comparisons.",FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0491,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align exactly two molecular sequences.,Pairwise alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0492,Multiple sequence alignment,Multiple alignment,"Align more than two molecular sequences.|This includes methods that use an existing alignment, for example to incorporate sequences into an alignment, or combine several multiple alignments into a single, improved alignment.",FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0492,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align more than two molecular sequences.,Multiple alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0493,Pairwise sequence alignment generation (local),,Locally align exactly two molecular sequences.|Local alignment methods identify regions of local similarity.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0493,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0495|http://edamontology.org/operation_0491,,,,,Locally align exactly two molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0494,Pairwise sequence alignment generation (global),,Globally align exactly two molecular sequences.|Global alignment methods identify similarity across the entire length of the sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0494,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0496|http://edamontology.org/operation_0491,,,,,Globally align exactly two molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0495,Local alignment,Local sequence alignment|Sequence alignment (local)|Smith-Waterman,Locally align two or more molecular sequences.|Local alignment methods identify regions of local similarity.,FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0495,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Locally align two or more molecular sequences.,Local sequence alignment|Sequence alignment (local),Smith-Waterman,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0496,Global alignment,Global sequence alignment|Sequence alignment (global),Globally align two or more molecular sequences.|Global alignment methods identify similarity across the entire length of the sequences.,FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0496,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Globally align two or more molecular sequences.,Global sequence alignment|Sequence alignment (global),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0497,Constrained sequence alignment,Multiple sequence alignment (constrained)|Sequence alignment (constrained),Align two or more molecular sequences with user-defined constraints.,FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0497,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align two or more molecular sequences with user-defined constraints.,Multiple sequence alignment (constrained)|Sequence alignment (constrained),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0498,Consensus-based sequence alignment,,Align two or more molecular sequences using multiple methods to achieve higher quality.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0498,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align two or more molecular sequences using multiple methods to achieve higher quality.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0292,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_0499,Tree-based sequence alignment,Sequence alignment (phylogenetic tree-based)|Multiple sequence alignment (phylogenetic tree-based)|Sequence alignment generation (phylogenetic tree-based)|Phylogenetic tree-based multiple sequence alignment construction|Multiple sequence alignment construction (phylogenetic tree-based),Align multiple sequences using relative gap costs calculated from neighbors in a supplied phylogenetic tree.|This is supposed to give a more biologically meaningful alignment than standard alignments.,FALSE,,,http://edamontology.org/operation_0292,,beta12orEarlier,,,,,,,,,,,,operation_0499,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align multiple sequences using relative gap costs calculated from neighbors in a supplied phylogenetic tree.,Sequence alignment (phylogenetic tree-based)|Multiple sequence alignment (phylogenetic tree-based)|Sequence alignment generation (phylogenetic tree-based)|Phylogenetic tree-based multiple sequence alignment construction|Multiple sequence alignment construction (phylogenetic tree-based),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0500,Secondary structure alignment generation,,Align molecular secondary structure (represented as a 1D string).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0500,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2928,,,,,Align molecular secondary structure (represented as a 1D string).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0501,Protein secondary structure alignment generation,,Align protein secondary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0501,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align protein secondary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2488,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2488,,,,,,
http://edamontology.org/operation_0502,RNA secondary structure alignment,RNA secondary structure alignment construction|RNA secondary structure alignment generation|Secondary structure alignment (RNA),Align RNA secondary structures.,FALSE,,,http://edamontology.org/operation_2439|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_0502,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align RNA secondary structures.,RNA secondary structure alignment construction|RNA secondary structure alignment generation|Secondary structure alignment (RNA),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0503,Pairwise structure alignment,Structure alignment (pairwise),Align (superimpose) exactly two molecular tertiary structures.,FALSE,,,http://edamontology.org/operation_0295,,beta12orEarlier,,,,,,,,,,,,operation_0503,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align (superimpose) exactly two molecular tertiary structures.,Structure alignment (pairwise),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0504,Multiple structure alignment,Structure alignment (multiple),Align (superimpose) more than two molecular tertiary structures.|This includes methods that use an existing alignment.,FALSE,,,http://edamontology.org/operation_0295,,beta12orEarlier,,,,,,,,,,,,operation_0504,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align (superimpose) more than two molecular tertiary structures.,Structure alignment (multiple),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0505,Structure alignment (protein),,Align protein tertiary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0505,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295,,,,,Align protein tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0506,Structure alignment (RNA),,Align RNA tertiary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0506,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295,,,,,Align RNA tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_0507,Pairwise structure alignment generation (local),,"Locally align (superimpose) exactly two molecular tertiary structures.|Local alignment methods identify regions of local similarity, common substructures etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0507,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295|http://edamontology.org/operation_0509,,,,,Locally align (superimpose) exactly two molecular tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0508,Pairwise structure alignment generation (global),,Globally align (superimpose) exactly two molecular tertiary structures.|Global alignment methods identify similarity across the entire structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0508,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295|http://edamontology.org/operation_0510,,,,,Globally align (superimpose) exactly two molecular tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0509,Local structure alignment,Structure alignment (local),"Locally align (superimpose) two or more molecular tertiary structures.|Local alignment methods identify regions of local similarity, common substructures etc.",FALSE,,,http://edamontology.org/operation_0295,,beta12orEarlier,,,,,,,,,,,,operation_0509,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Locally align (superimpose) two or more molecular tertiary structures.,Structure alignment (local),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0510,Global structure alignment,Structure alignment (global),Globally align (superimpose) two or more molecular tertiary structures.|Global alignment methods identify similarity across the entire structures.,FALSE,,,http://edamontology.org/operation_0295,,beta12orEarlier,,,,,,,,,,,,operation_0510,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Globally align (superimpose) two or more molecular tertiary structures.,Structure alignment (global),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0511,Profile-profile alignment (pairwise),,"Align exactly two molecular profiles.|Methods might perform one-to-one, one-to-many or many-to-many comparisons.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0511,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align exactly two molecular profiles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0298,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_0512,Sequence alignment generation (multiple profile),,Align two or more molecular profiles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0512,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0298,,,,,Align two or more molecular profiles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0513,3D profile-to-3D profile alignment (pairwise),,Align exactly two molecular Structural (3D) profiles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0513,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align exactly two molecular Structural (3D) profiles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0299,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_0514,Structural profile alignment generation (multiple),,Align two or more molecular 3D profiles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0514,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0299,,,,,Align two or more molecular 3D profiles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0515,Data retrieval (tool metadata),,"Search and retrieve names of or documentation on bioinformatics tools, for example by keyword or which perform a particular function.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0515,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,"Search and retrieve names of or documentation on bioinformatics tools, for example by keyword or which perform a particular function.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0516,Data retrieval (database metadata),,"Search and retrieve names of or documentation on bioinformatics databases or query terms, for example by keyword.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0516,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,"Search and retrieve names of or documentation on bioinformatics databases or query terms, for example by keyword.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0517,PCR primer design (for large scale sequencing),,Predict primers for large scale sequencing.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0517,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict primers for large scale sequencing.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0518,PCR primer design (for genotyping polymorphisms),,"Predict primers for genotyping polymorphisms, for example single nucleotide polymorphisms (SNPs).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0518,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict primers for genotyping polymorphisms, for example single nucleotide polymorphisms (SNPs).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0519,PCR primer design (for gene transcription profiling),,Predict primers for gene transcription profiling.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0519,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict primers for gene transcription profiling.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0520,PCR primer design (for conserved primers),,Predict primers that are conserved across multiple genomes or species.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0520,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict primers that are conserved across multiple genomes or species.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0521,PCR primer design (based on gene structure),,,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0521,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0522,PCR primer design (for methylation PCRs),,Predict primers for methylation PCRs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0522,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict primers for methylation PCRs.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0308,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/operation_0523,Mapping assembly,Sequence assembly (mapping assembly),"Sequence assembly by combining fragments using an existing backbone sequence, typically a reference genome.|The final sequence will resemble the backbone sequence. Mapping assemblers are usually much faster and less memory intensive than de-novo assemblers.",FALSE,,,http://edamontology.org/operation_0310,,beta12orEarlier,,,,,,,,,,,,operation_0523,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sequence assembly by combining fragments using an existing backbone sequence, typically a reference genome.",Sequence assembly (mapping assembly),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0524,De-novo assembly,De Bruijn graph|Sequence assembly (de-novo assembly),Sequence assembly by combining fragments without the aid of a reference sequence or genome.|De-novo assemblers are much slower and more memory intensive than mapping assemblers.,FALSE,,,http://edamontology.org/operation_0310,,beta12orEarlier,,,,,,,,,,,,operation_0524,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence assembly by combining fragments without the aid of a reference sequence or genome.,De Bruijn graph|Sequence assembly (de-novo assembly),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0525,Genome assembly,Sequence assembly (genome assembly)|Genomic assembly|Breakend assembly,The process of assembling many short DNA sequences together such thay they represent the original chromosomes from which the DNA originated.,FALSE,,,http://edamontology.org/operation_0310,,beta12orEarlier,,,,,,,,,,,,operation_0525,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The process of assembling many short DNA sequences together such thay they represent the original chromosomes from which the DNA originated.,Sequence assembly (genome assembly)|Genomic assembly,Breakend assembly,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0526,EST assembly,Sequence assembly (EST assembly),"Sequence assembly for EST sequences (transcribed mRNA).|Assemblers must handle (or be complicated by) alternative splicing, trans-splicing, single-nucleotide polymorphism (SNP), recoding, and post-transcriptional modification.",FALSE,,,http://edamontology.org/operation_0310,,beta12orEarlier,,,,,,,,,,,,operation_0526,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence assembly for EST sequences (transcribed mRNA).,Sequence assembly (EST assembly),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0527,Sequence tag mapping,Tag to gene assignment,"Make sequence tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data.|Sequence tag mapping assigns experimentally obtained sequence tags to known transcripts or annotate potential virtual sequence tags in a genome.",FALSE,,,http://edamontology.org/operation_2520|http://edamontology.org/operation_0226,,beta12orEarlier,,,,,,,,,,,,operation_0527,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Make sequence tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data.",Tag to gene assignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0528,SAGE data processing,,Process (read and / or write) serial analysis of gene expression (SAGE) data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0528,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Process (read and / or write) serial analysis of gene expression (SAGE) data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0529,MPSS data processing,,Process (read and / or write) massively parallel signature sequencing (MPSS) data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0529,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Process (read and / or write) massively parallel signature sequencing (MPSS) data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0530,SBS data processing,,Process (read and / or write) sequencing by synthesis (SBS) data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0530,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Process (read and / or write) sequencing by synthesis (SBS) data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0531,Heat map generation,Heat map construction,Generate a heat map of gene expression from e.g. microarray data.|The heat map usually uses a coloring scheme to represent clusters. They can show how expression of mRNA by a set of genes was influenced by experimental conditions.,FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_0571,,beta12orEarlier,,,,,,,,,,,,operation_0531,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a heat map of gene expression from e.g. microarray data.,Heat map construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0532,Gene expression profile analysis,,"Analyse one or more gene expression profiles, typically to interpret them in functional terms.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0532,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,"Analyse one or more gene expression profiles, typically to interpret them in functional terms.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_0533,Gene expression profile pathway mapping,,"Map a gene expression profile to known biological pathways, for example, to identify or reconstruct a pathway.",FALSE,,,http://edamontology.org/operation_2429|http://edamontology.org/operation_2497|http://edamontology.org/operation_2495,,beta12orEarlier,,,,,,,,,,,,operation_0533,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Map a gene expression profile to known biological pathways, for example, to identify or reconstruct a pathway.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0534,Protein secondary structure assignment (from coordinate data),,Assign secondary structure from protein coordinate data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0534,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign secondary structure from protein coordinate data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0319,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0319,,,,,,
http://edamontology.org/operation_0535,Protein secondary structure assignment (from CD data),,Assign secondary structure from circular dichroism (CD) spectroscopic data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0535,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign secondary structure from circular dichroism (CD) spectroscopic data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0319,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0319,,,,,,
http://edamontology.org/operation_0536,Protein structure assignment (from X-ray crystallographic data),,Assign a protein tertiary structure (3D coordinates) from raw X-ray crystallography data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0536,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign a protein tertiary structure (3D coordinates) from raw X-ray crystallography data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0320,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/operation_0537,Protein structure assignment (from NMR data),,Assign a protein tertiary structure (3D coordinates) from raw NMR spectroscopy data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0537,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign a protein tertiary structure (3D coordinates) from raw NMR spectroscopy data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0320,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/operation_0538,Phylogenetic tree generation (data centric),Phylogenetic tree construction (data centric),Construct a phylogenetic tree from a specific type of data.,FALSE,,,http://edamontology.org/operation_0323,,beta12orEarlier,,,,,,,,,,,,operation_0538,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree from a specific type of data.,Phylogenetic tree construction (data centric),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0539,Phylogenetic tree generation (method centric),Phylogenetic tree construction (method centric),Construct a phylogenetic tree using a specific method.,FALSE,,,http://edamontology.org/operation_0323,,beta12orEarlier,,,,,,,,,,,,operation_0539,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree using a specific method.,Phylogenetic tree construction (method centric),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0540,Phylogenetic tree generation (from molecular sequences),Phylogenetic tree construction (from molecular sequences),Phylogenetic tree construction from molecular sequences.|Methods typically compare multiple molecular sequence and estimate evolutionary distances and relationships to infer gene families or make functional predictions.,FALSE,,,http://edamontology.org/operation_0538|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0540,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree construction from molecular sequences.,Phylogenetic tree construction (from molecular sequences),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0541,Phylogenetic tree generation (from continuous quantitative characters),Phylogenetic tree construction (from continuous quantitative characters),Phylogenetic tree construction from continuous quantitative character data.,FALSE,,,http://edamontology.org/operation_0538,,beta12orEarlier,,,,,,,,,,,,operation_0541,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree construction from continuous quantitative character data.,Phylogenetic tree construction (from continuous quantitative characters),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0542,Phylogenetic tree generation (from gene frequencies),Phylogenetic tree construction (from gene frequencies),Phylogenetic tree construction from gene frequency data.,FALSE,,,http://edamontology.org/operation_0538,,beta12orEarlier,,,,,,,,,,,,operation_0542,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Phylogenetic tree construction from gene frequency data.,Phylogenetic tree construction (from gene frequencies),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0543,Phylogenetic tree construction (from polymorphism data),Phylogenetic tree generation (from polymorphism data),"Phylogenetic tree construction from polymorphism data including microsatellites, RFLP (restriction fragment length polymorphisms), RAPD (random-amplified polymorphic DNA) and AFLP (amplified fragment length polymorphisms) data.",FALSE,,,http://edamontology.org/operation_0538,,beta12orEarlier,,,,,,,,,,,,operation_0543,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Phylogenetic tree construction from polymorphism data including microsatellites, RFLP (restriction fragment length polymorphisms), RAPD (random-amplified polymorphic DNA) and AFLP (amplified fragment length polymorphisms) data.",Phylogenetic tree generation (from polymorphism data),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0544,Phylogenetic species tree construction,Phylogenetic species tree generation,"Construct a phylogenetic species tree, for example, from a genome-wide sequence comparison.",FALSE,,,http://edamontology.org/operation_0540,,beta12orEarlier,,,,,,,,,,,,operation_0544,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Construct a phylogenetic species tree, for example, from a genome-wide sequence comparison.",Phylogenetic species tree generation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0545,Phylogenetic tree generation (parsimony methods),Phylogenetic tree construction (parsimony methods),Construct a phylogenetic tree by computing a sequence alignment and searching for the tree with the fewest number of character-state changes from the alignment.|This includes evolutionary parsimony (invariants) methods.,FALSE,,,http://edamontology.org/operation_0539,,beta12orEarlier,,,,,,,,,,,,operation_0545,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree by computing a sequence alignment and searching for the tree with the fewest number of character-state changes from the alignment.,Phylogenetic tree construction (parsimony methods),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0546,Phylogenetic tree generation (minimum distance methods),Phylogenetic tree construction (minimum distance methods),Construct a phylogenetic tree by computing (or using precomputed) distances between sequences and searching for the tree with minimal discrepancies between pairwise distances.|This includes neighbor joining (NJ) clustering method.,FALSE,,,http://edamontology.org/operation_0539,,beta12orEarlier,,,,,,,,,,,,operation_0546,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree by computing (or using precomputed) distances between sequences and searching for the tree with minimal discrepancies between pairwise distances.,Phylogenetic tree construction (minimum distance methods),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0547,Phylogenetic tree generation (maximum likelihood and Bayesian methods),Phylogenetic tree construction (maximum likelihood and Bayesian methods),"Construct a phylogenetic tree by relating sequence data to a hypothetical tree topology using a model of sequence evolution.|Maximum likelihood methods search for a tree that maximizes a likelihood function, i.e. that is most likely given the data and model. Bayesian analysis estimate the probability of tree for branch lengths and topology, typically using a Monte Carlo algorithm.",FALSE,,,http://edamontology.org/operation_0539,,beta12orEarlier,,,,,,,,,,,,operation_0547,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree by relating sequence data to a hypothetical tree topology using a model of sequence evolution.,Phylogenetic tree construction (maximum likelihood and Bayesian methods),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0548,Phylogenetic tree generation (quartet methods),Phylogenetic tree construction (quartet methods),Construct a phylogenetic tree by computing four-taxon trees (4-trees) and searching for the phylogeny that matches most closely.,FALSE,,,http://edamontology.org/operation_0539,,beta12orEarlier,,,,,,,,,,,,operation_0548,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a phylogenetic tree by computing four-taxon trees (4-trees) and searching for the phylogeny that matches most closely.,Phylogenetic tree construction (quartet methods),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0549,Phylogenetic tree generation (AI methods),Phylogenetic tree construction (AI methods),"Construct a phylogenetic tree by using artificial-intelligence methods, for example genetic algorithms.",FALSE,,,http://edamontology.org/operation_0539,,beta12orEarlier,,,,,,,,,,,,operation_0549,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Construct a phylogenetic tree by using artificial-intelligence methods, for example genetic algorithms.",Phylogenetic tree construction (AI methods),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0550,DNA substitution modelling,Sequence alignment analysis (phylogenetic modelling),Identify a plausible model of DNA substitution that explains a molecular (DNA or protein) sequence alignment.,FALSE,,,http://edamontology.org/operation_2478|http://edamontology.org/operation_2426,,beta12orEarlier,,,,,,,,,,,,operation_0550,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify a plausible model of DNA substitution that explains a molecular (DNA or protein) sequence alignment.,Sequence alignment analysis (phylogenetic modelling),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0551,Phylogenetic tree analysis (shape),Phylogenetic tree topology analysis,Analyse the shape (topology) of a phylogenetic tree.,FALSE,,,http://edamontology.org/operation_0324,,beta12orEarlier,,,,,,,,,,,,operation_0551,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse the shape (topology) of a phylogenetic tree.,Phylogenetic tree topology analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0552,Phylogenetic tree bootstrapping,,Apply bootstrapping or other measures to estimate confidence of a phylogenetic tree.,FALSE,,,http://edamontology.org/operation_0324|http://edamontology.org/operation_2428,,beta12orEarlier,,,,,,,,,,,,operation_0552,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Apply bootstrapping or other measures to estimate confidence of a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0553,Phylogenetic tree analysis (gene family prediction),,Predict families of genes and gene function based on their position in a phylogenetic tree.,FALSE,,,http://edamontology.org/operation_0324,,beta12orEarlier,,,,,,,,,,,,operation_0553,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict families of genes and gene function based on their position in a phylogenetic tree.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0554,Phylogenetic tree analysis (natural selection),,"Analyse a phylogenetic tree to identify allele frequency distribution and change that is subject to evolutionary pressures (natural selection, genetic drift, mutation and gene flow). Identify type of natural selection (such as stabilizing, balancing or disruptive).|Stabilizing/purifying (directional) selection favors a single phenotype and tends to decrease genetic diversity as a population stabilizes on a particular trait, selecting out trait extremes or deleterious mutations. In contrast, balancing selection maintain genetic polymorphisms (or multiple alleles), whereas disruptive (or diversifying) selection favors individuals at both extremes of a trait.",FALSE,,,http://edamontology.org/operation_0324,,beta12orEarlier,,,,,,,,,,,,operation_0554,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse a phylogenetic tree to identify allele frequency distribution and change that is subject to evolutionary pressures (natural selection, genetic drift, mutation and gene flow). Identify type of natural selection (such as stabilizing, balancing or disruptive).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0555,Phylogenetic tree generation (consensus),Phylogenetic tree construction (consensus),Compare two or more phylogenetic trees to produce a consensus tree.|Methods typically test for topological similarity between trees using for example a congruence index.,FALSE,,,http://edamontology.org/operation_0325|http://edamontology.org/operation_0323,,beta12orEarlier,,,,,,,,,,,,operation_0555,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more phylogenetic trees to produce a consensus tree.,Phylogenetic tree construction (consensus),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0556,Phylogenetic sub/super tree detection,,Compare two or more phylogenetic trees to detect subtrees or supertrees.,FALSE,,,http://edamontology.org/operation_0325,,beta12orEarlier,,,,,,,,,,,,operation_0556,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more phylogenetic trees to detect subtrees or supertrees.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0557,Phylogenetic tree distances calculation,,Compare two or more phylogenetic trees to calculate distances between trees.,FALSE,,,http://edamontology.org/operation_0325,,beta12orEarlier,,,,,,,,,,,,operation_0557,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more phylogenetic trees to calculate distances between trees.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0558,Phylogenetic tree annotation,,Annotate a phylogenetic tree with terms from a controlled vocabulary.,FALSE,,,http://edamontology.org/operation_0226,,beta12orEarlier,,,,,,,,,,,,operation_0558,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Annotate a phylogenetic tree with terms from a controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0559,Immunogenicity prediction,,Predict and optimise peptide ligands that elicit an immunological response.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0559,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict and optimise peptide ligands that elicit an immunological response.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0252,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0560,DNA vaccine design,,Predict or optimise DNA to elicit (via DNA vaccination) an immunological response.,FALSE,,,http://edamontology.org/operation_3095,,beta12orEarlier,,,,,,,,,,,,operation_0560,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict or optimise DNA to elicit (via DNA vaccination) an immunological response.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0561,Sequence formatting,,Reformat (a file or other report of) molecular sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0561,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reformat (a file or other report of) molecular sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0335,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0562,Sequence alignment formatting,,Reformat (a file or other report of) molecular sequence alignment(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0562,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reformat (a file or other report of) molecular sequence alignment(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0335,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0563,Codon usage table formatting,,Reformat a codon usage table.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0563,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reformat a codon usage table.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0335,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_0564,Sequence visualisation,Sequence rendering|Sequence alignment visualisation,"Visualise, format or render a molecular sequence or sequences such as a sequence alignment, possibly with sequence features or properties shown.",FALSE,,,http://edamontology.org/operation_0337|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_0564,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render a molecular sequence or sequences such as a sequence alignment, possibly with sequence features or properties shown.",Sequence rendering,Sequence alignment visualisation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0565,Sequence alignment visualisation,,"Visualise, format or print a molecular sequence alignment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0565,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or print a molecular sequence alignment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0564,,,,,,,,,,,,,1.15,,,,,,,
http://edamontology.org/operation_0566,Sequence cluster visualisation,Sequence cluster rendering,"Visualise, format or render sequence clusters.",FALSE,,,http://edamontology.org/operation_0337,,beta12orEarlier,,,,,,,,,,,,operation_0566,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render sequence clusters.",Sequence cluster rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0567,Phylogenetic tree visualisation,Phylogenetic tree rendering,Render or visualise a phylogenetic tree.,FALSE,,,http://edamontology.org/operation_0324|http://edamontology.org/operation_0337,,beta12orEarlier,,,,,,,,,,,,operation_0567,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render or visualise a phylogenetic tree.,Phylogenetic tree rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0568,RNA secondary structure visualisation,,"Visualise RNA secondary structure, knots, pseudoknots etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0568,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise RNA secondary structure, knots, pseudoknots etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0570,,,,,,,,,,,,,1.15,,,,,,,
http://edamontology.org/operation_0569,Protein secondary structure visualisation,,Render and visualise protein secondary structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0569,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render and visualise protein secondary structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0570,,,,,,,,,,,,,1.15,,,,,,,
http://edamontology.org/operation_0570,Structure visualisation,Structure rendering|RNA secondary structure visualisation|Protein secondary structure visualisation,"Visualise or render molecular structure, for example a high-quality static picture or animation.  This includes secondary structure such as knots, pseudoknots etc. as well as tertiary and quaternary structure.",FALSE,,,http://edamontology.org/operation_0337|http://edamontology.org/operation_2480,,beta12orEarlier,,,,,,,,,,,,operation_0570,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise or render molecular structure, for example a high-quality static picture or animation.  This includes secondary structure such as knots, pseudoknots etc. as well as tertiary and quaternary structure.",Structure rendering,RNA secondary structure visualisation|Protein secondary structure visualisation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0571,Expression data rendering,Microarray data rendering,Visualise microarray or other expression data.,FALSE,,,http://edamontology.org/operation_0337|http://edamontology.org/operation_3441|http://edamontology.org/operation_2495,,beta12orEarlier,,,,,,,,,,,,operation_0571,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Visualise microarray or other expression data.,,Microarray data rendering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0572,Protein interaction network rendering,,Identify and analyse networks of protein interactions.,FALSE,,,http://edamontology.org/operation_3083,,beta12orEarlier,,,,,,,,,,,,operation_0572,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify and analyse networks of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0573,Map drawing,DNA map drawing|Map rendering,Draw or visualise a DNA map.,FALSE,,,http://edamontology.org/operation_0337,,beta12orEarlier,,,,,,,,,,,,operation_0573,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Draw or visualise a DNA map.,DNA map drawing|Map rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0574,Sequence motif rendering,,Render a sequence with motifs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0574,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0564,,,,,Render a sequence with motifs.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0575,Restriction map drawing,,Draw or visualise restriction maps in DNA sequences.,FALSE,,,http://edamontology.org/operation_0431|http://edamontology.org/operation_0573,,beta12orEarlier,,,,,,,,,,,,operation_0575,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Draw or visualise restriction maps in DNA sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0577,DNA linear map rendering,,Draw a linear maps of DNA.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_0577,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0573,,,,,Draw a linear maps of DNA.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_0578,Plasmid map drawing,DNA circular map rendering,"Draw a circular maps of DNA, for example a plasmid map.",FALSE,,,http://edamontology.org/operation_0573,,beta12orEarlier,,,,,,,,,,,,operation_0578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA circular map rendering,,,"Draw a circular maps of DNA, for example a plasmid map.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_0579,Operon drawing,Operon rendering,Visualise operon structure etc.,FALSE,,,http://edamontology.org/operation_0573,,beta12orEarlier,,,,,,,,,,,,operation_0579,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Visualise operon structure etc.,Operon rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1768,Nucleic acid folding family identification,,Identify folding families of related RNAs.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1768,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0483,,,,,Identify folding families of related RNAs.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_1769,Nucleic acid folding energy calculation,,"Compute energies of nucleic acid folding, e.g. minimum folding energies for DNA or RNA sequences or energy landscape of RNA mutants.",FALSE,,,http://edamontology.org/operation_0279,,beta12orEarlier,,,,,,,,,,,,operation_1769,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compute energies of nucleic acid folding, e.g. minimum folding energies for DNA or RNA sequences or energy landscape of RNA mutants.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1774,Annotation retrieval,,"Retrieve existing annotation (or documentation), typically annotation on a database entity.|Use this concepts for tools which retrieve pre-existing annotations, not for example prediction methods that might make annotations.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1774,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,"Retrieve existing annotation (or documentation), typically annotation on a database entity.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_1777,Protein function prediction,,"Predict general functional properties of a protein.|For functional properties that can be mapped to a sequence, use 'Sequence feature detection (protein)' instead.",FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_2414,,beta12orEarlier,,,,,,,,,,,,operation_1777,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict general functional properties of a protein.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1778,Protein function comparison,,Compare the functional properties of two or more proteins.,FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_2414,,beta12orEarlier,,,,,,,,,,,,operation_1778,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare the functional properties of two or more proteins.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1780,Sequence submission,,Submit a molecular sequence to a database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1780,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_3431,,,,,Submit a molecular sequence to a database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_1781,Gene regulatory network analysis,,Analyse a known network of gene regulation.,FALSE,,,http://edamontology.org/operation_2497,,beta12orEarlier,,,,,,,,,,,,operation_1781,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a known network of gene regulation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1812,Loading,Data loading,Prepare or load a user-specified data file so that it is available for use.,FALSE,,,http://edamontology.org/operation_2409,,beta12orEarlier,,,,,,,,,,,,operation_1812,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:UploadPDB,Prepare or load a user-specified data file so that it is available for use.,Data loading,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1813,Sequence retrieval,,Query a sequence data resource (typically a database) and retrieve sequences and / or annotation.|This includes direct retrieval methods (e.g. the dbfetch program) but not those that perform calculations on the sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1813,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a sequence data resource (typically a database) and retrieve sequences and / or annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_1814,Structure retrieval,,"Query a tertiary structure data resource (typically a database) and retrieve structures, structure-related data and annotation.|This includes direct retrieval methods but not those that perform calculations on the sequence or structure.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1814,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,WHATIF:EchoPDB|WHATIF:DownloadPDB,"Query a tertiary structure data resource (typically a database) and retrieve structures, structure-related data and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_1816,Surface rendering,,"Calculate the positions of dots that are homogeneously distributed over the surface of a molecule.|A dot has three coordinates (x,y,z) and (typically) a color.",FALSE,,,http://edamontology.org/operation_0570|http://edamontology.org/operation_3351,,beta12orEarlier,,,,,,,,,,,,operation_1816,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:GetSurfaceDots,Calculate the positions of dots that are homogeneously distributed over the surface of a molecule.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1817,Protein atom surface calculation (accessible),,Calculate the solvent accessibility ('accessible surface') for each atom in a structure.|Waters are not considered.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1817,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible surface') for each atom in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1818,Protein atom surface calculation (accessible molecular),,Calculate the solvent accessibility ('accessible molecular surface') for each atom in a structure.|Waters are not considered.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1818,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible molecular surface') for each atom in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1819,Protein residue surface calculation (accessible),,"Calculate the solvent accessibility ('accessible surface') for each residue in a structure.|Solvent accessibility might be calculated for the backbone, sidechain and total (backbone plus sidechain).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1819,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible surface') for each residue in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1820,Protein residue surface calculation (vacuum accessible),,"Calculate the solvent accessibility ('vacuum accessible surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.|Solvent accessibility might be calculated for the backbone, sidechain and total (backbone plus sidechain).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1820,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('vacuum accessible surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1821,Protein residue surface calculation (accessible molecular),,"Calculate the solvent accessibility ('accessible molecular surface') for each residue in a structure.|Solvent accessibility might be calculated for the backbone, sidechain and total (backbone plus sidechain).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1821,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible molecular surface') for each residue in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1822,Protein residue surface calculation (vacuum molecular),,"Calculate the solvent accessibility ('vacuum molecular surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.|Solvent accessibility might be calculated for the backbone, sidechain and total (backbone plus sidechain).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1822,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('vacuum molecular surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1823,Protein surface calculation (accessible molecular),,Calculate the solvent accessibility ('accessible molecular surface') for a structure as a whole.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1823,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible molecular surface') for a structure as a whole.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1824,Protein surface calculation (accessible),,Calculate the solvent accessibility ('accessible surface') for a structure as a whole.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1824,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility ('accessible surface') for a structure as a whole.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1825,Backbone torsion angle calculation,,Calculate for each residue in a protein structure all its backbone torsion angles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1825,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate for each residue in a protein structure all its backbone torsion angles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0249,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1826,Full torsion angle calculation,,Calculate for each residue in a protein structure all its torsion angles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1826,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate for each residue in a protein structure all its torsion angles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0249,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1827,Cysteine torsion angle calculation,,Calculate for each cysteine (bridge) all its torsion angles.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1827,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate for each cysteine (bridge) all its torsion angles.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0249,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1828,Tau angle calculation,,For each amino acid in a protein structure calculate the backbone angle tau.|Tau is the backbone angle N-Calpha-C (angle over the C-alpha).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1828,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,For each amino acid in a protein structure calculate the backbone angle tau.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0249,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1829,Cysteine bridge detection,,Detect cysteine bridges (from coordinate data) in a protein structure.,FALSE,,,http://edamontology.org/operation_1850,,beta12orEarlier,,,,,,,,,,,,operation_1829,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowCysteineBridge,Detect cysteine bridges (from coordinate data) in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1830,Free cysteine detection,,"Detect free cysteines in a protein structure.|A free cysteine is neither involved in a cysteine bridge, nor functions as a ligand to a metal.",FALSE,,,http://edamontology.org/operation_1850,,beta12orEarlier,,,,,,,,,,,,operation_1830,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowCysteineFree,Detect free cysteines in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1831,Metal-bound cysteine detection,,Detect cysteines that are bound to metal in a protein structure.,FALSE,,,http://edamontology.org/operation_1850|http://edamontology.org/operation_0248,,beta12orEarlier,,,,,,,,,,,,operation_1831,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowCysteineMetal,Detect cysteines that are bound to metal in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1832,Residue contact calculation (residue-nucleic acid),,Calculate protein residue contacts with nucleic acids in a structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1832,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate protein residue contacts with nucleic acids in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1834,Protein-metal contact calculation,Residue-metal contact calculation,Calculate protein residue contacts with metal in a structure.,FALSE,,,http://edamontology.org/operation_0248,,beta12orEarlier,,,,,,,,,,,,operation_1834,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate protein residue contacts with metal in a structure.,Residue-metal contact calculation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1835,Residue contact calculation (residue-negative ion),,Calculate ion contacts in a structure (all ions for all side chain atoms).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1835,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate ion contacts in a structure (all ions for all side chain atoms).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1836,Residue bump detection,,"Detect 'bumps' between residues in a structure, i.e. those with pairs of atoms whose Van der Waals' radii interpenetrate more than a defined distance.",FALSE,,,http://edamontology.org/operation_0321,,beta12orEarlier,,,,,,,,,,,,operation_1836,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowBumps,"Detect 'bumps' between residues in a structure, i.e. those with pairs of atoms whose Van der Waals' radii interpenetrate more than a defined distance.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1837,Residue symmetry contact calculation,,Calculate the number of symmetry contacts made by residues in a protein structure.|A symmetry contact is a contact between two atoms in different asymmetric unit.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1837,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:SymmetryContact,Calculate the number of symmetry contacts made by residues in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1838,Residue contact calculation (residue-ligand),,Calculate contacts between residues and ligands in a protein structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1838,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate contacts between residues and ligands in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1839,Salt bridge calculation,,Calculate (and possibly score) salt bridges in a protein structure.|Salt bridges are interactions between oppositely charged atoms in different residues. The output might include the inter-atomic distance.,FALSE,,,http://edamontology.org/operation_0248,,beta12orEarlier,,,,,,,,,,,,operation_1839,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowSaltBridges|WHATIF:HasSaltBridgePlus|WHATIF:ShowSaltBridgesH|WHATIF:HasSaltBridge,Calculate (and possibly score) salt bridges in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1841,Rotamer likelihood prediction,,"Predict rotamer likelihoods for all 20 amino acid types at each position in a protein structure.|Output typically includes, for each residue position, the likelihoods for the 20 amino acid types with estimated reliability of the 20 likelihoods.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1841,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ShowLikelyRotamers500|WHATIF:ShowLikelyRotamers200|WHATIF:ShowLikelyRotamers900|WHATIF:ShowLikelyRotamers400|WHATIF:ShowLikelyRotamers800|WHATIF:ShowLikelyRotamers100|WHATIF:ShowLikelyRotamers700|WHATIF:ShowLikelyRotamers|WHATIF:ShowLikelyRotamers600|WHATIF:ShowLikelyRotamers300,Predict rotamer likelihoods for all 20 amino acid types at each position in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0480,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1842,Proline mutation value calculation,,"Calculate for each position in a protein structure the chance that a proline, when introduced at this position, would increase the stability of the whole protein.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1842,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:ProlineMutationValue,"Calculate for each position in a protein structure the chance that a proline, when introduced at this position, would increase the stability of the whole protein.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0331,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1843,Residue packing validation,,Identify poorly packed residues in protein structures.,FALSE,,,http://edamontology.org/operation_0321,,beta12orEarlier,,,,,,,,,,,,operation_1843,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PackingQuality,Identify poorly packed residues in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1844,Protein geometry validation,,"Validate protein geometry, for example bond lengths, bond angles, torsion angles, chiralities, planaraties etc.",FALSE,,,http://edamontology.org/operation_0321,,beta12orEarlier,,,,,,,,,,,,operation_1844,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: ImproperQualityMax|WHATIF: ImproperQualitySum,"Validate protein geometry, for example bond lengths, bond angles, torsion angles, chiralities, planaraties etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1845,PDB file sequence retrieval,,Extract a molecular sequence from a PDB file.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1845,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDB_sequence,Extract a molecular sequence from a PDB file.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2422,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_1846,HET group detection,,"Identify HET groups in PDB files.|A HET group usually corresponds to ligands, lipids, but might also (not consistently) include groups that are attached to amino acids. Each HET group is supposed to have a unique three letter code and a unique name which might be given in the output.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1846,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify HET groups in PDB files.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1847,DSSP secondary structure assignment,,Determine for residue the DSSP determined secondary structure in three-state (HSC).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1847,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0319,,,,,Determine for residue the DSSP determined secondary structure in three-state (HSC).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_1848,Structure formatting,,Reformat (a file or other report of) tertiary structure data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1848,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF: PDBasXML,Reformat (a file or other report of) tertiary structure data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0335,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1850,Protein cysteine and disulfide bond assignment,,Assign cysteine bonding state and disulfide bond partners in protein structures.,FALSE,,,http://edamontology.org/operation_3023,,beta12orEarlier,,,,,,,,,,,,operation_1850,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign cysteine bonding state and disulfide bond partners in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_1913,Residue validation,,Identify poor quality amino acid positions in protein structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1913,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify poor quality amino acid positions in protein structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0321,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_1914,Structure retrieval (water),,Query a tertiary structure database and retrieve water molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_1914,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,WHATIF:MovedWaterPDB,Query a tertiary structure database and retrieve water molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2008,siRNA duplex prediction,,Identify or predict siRNA duplexes in RNA.,FALSE,,,http://edamontology.org/operation_0443,,beta12orEarlier,,,,,,,,,,,,operation_2008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict siRNA duplexes in RNA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2089,Sequence alignment refinement,,Refine an existing sequence alignment.,FALSE,,,http://edamontology.org/operation_0258|http://edamontology.org/operation_2425,,beta12orEarlier,,,,,,,,,,,,operation_2089,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Refine an existing sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2120,Listfile processing,,Process an EMBOSS listfile (list of EMBOSS Uniform Sequence Addresses).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2120,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2409,,,,,Process an EMBOSS listfile (list of EMBOSS Uniform Sequence Addresses).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2121,Sequence file editing,,"Perform basic (non-analytical) operations on a report or file of sequences (which might include features), such as file concatenation, removal or ordering of sequences, creation of subset or a new file of sequences.",FALSE,,,http://edamontology.org/operation_0231|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2121,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Perform basic (non-analytical) operations on a report or file of sequences (which might include features), such as file concatenation, removal or ordering of sequences, creation of subset or a new file of sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2122,Sequence alignment file processing,,"Perform basic (non-analytical) operations on a sequence alignment file, such as copying or removal and ordering of sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2122,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2409,,,,,"Perform basic (non-analytical) operations on a sequence alignment file, such as copying or removal and ordering of sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2123,Small molecule data processing,,Process (read and / or write) physicochemical property data for small molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2123,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2480,,,,,Process (read and / or write) physicochemical property data for small molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2222,Data retrieval (ontology annotation),,Search and retrieve documentation on a bioinformatics ontology.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2222,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Search and retrieve documentation on a bioinformatics ontology.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2224,Data retrieval (ontology concept),,Query an ontology and retrieve concepts or relations.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2224,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query an ontology and retrieve concepts or relations.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2233,Representative sequence identification,,"Identify a representative sequence from a set of sequences, typically using scores from pair-wise alignment or other comparison of the sequences.",FALSE,,,http://edamontology.org/operation_2451,,beta12orEarlier,,,,,,,,,,,,operation_2233,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify a representative sequence from a set of sequences, typically using scores from pair-wise alignment or other comparison of the sequences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2234,Structure file processing,,Perform basic (non-analytical) operations on a file of molecular tertiary structural data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2234,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2409,,,,,Perform basic (non-analytical) operations on a file of molecular tertiary structural data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2237,Data retrieval (sequence profile),,"Query a profile data resource and retrieve one or more profile(s) and / or associated annotation.|This includes direct retrieval methods that retrieve a profile by, e.g. the profile name.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2237,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a profile data resource and retrieve one or more profile(s) and / or associated annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2238,Statistical calculation,Hypothesis testing|Significance testing|Statistical testing|Statistical analysis|Gibbs sampling|Expectation maximisation|Omnibus test,"Perform a statistical data operation of some type, e.g. calibration or validation.",FALSE,,,http://edamontology.org/operation_3438,,beta12orEarlier,,,,,,,,,,,,operation_2238,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Perform a statistical data operation of some type, e.g. calibration or validation.",Hypothesis testing|Significance testing|Statistical testing|Statistical analysis,Gibbs sampling|Expectation maximisation|Omnibus test,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2239,3D-1D scoring matrix generation,3D-1D scoring matrix construction,Calculate a 3D-1D scoring matrix from analysis of protein sequence and structural data.|A 3D-1D scoring matrix scores the probability of amino acids occurring in different structural environments.,FALSE,,,http://edamontology.org/operation_3429|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_2239,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a 3D-1D scoring matrix from analysis of protein sequence and structural data.,3D-1D scoring matrix construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2241,Transmembrane protein visualisation,Transmembrane protein rendering,"Visualise transmembrane proteins, typically the transmembrane regions within a sequence.",FALSE,,,http://edamontology.org/operation_0570|http://edamontology.org/operation_0270,,beta12orEarlier,,,,,,,,,,,,operation_2241,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise transmembrane proteins, typically the transmembrane regions within a sequence.",Transmembrane protein rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2246,Demonstration,,An operation performing purely illustrative (pedagogical) purposes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2246,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An operation performing purely illustrative (pedagogical) purposes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2264,Data retrieval (pathway or network),,Query a biological pathways database and retrieve annotation on one or more pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2264,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a biological pathways database and retrieve annotation on one or more pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2265,Data retrieval (identifier),,Query a database and retrieve one or more data identifiers.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2265,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Query a database and retrieve one or more data identifiers.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2284,Nucleic acid density plotting,,Calculate a density plot (of base composition) for a nucleotide sequence.,FALSE,,,http://edamontology.org/operation_0236|http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2284,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate a density plot (of base composition) for a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2403,Sequence analysis,Sequence analysis (general),Analyse one or more known molecular sequences.,FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2403,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse one or more known molecular sequences.,Sequence analysis (general),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2404,Sequence motif analysis,Sequence motif processing,Analyse molecular sequence motifs.,FALSE,,,http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2404,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse molecular sequence motifs.,Sequence motif processing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2405,Protein interaction data processing,,Process (read and / or write) protein interaction data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2405,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2949,,,,,Process (read and / or write) protein interaction data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2406,Protein structure analysis,Structure analysis (protein),Analyse protein tertiary structural data.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2406,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse protein tertiary structural data.,Structure analysis (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2407,Annotation processing,,"Process (read and / or write) annotation of some type, typically annotation on an entry from a biological or biomedical database entity.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2407,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,"Process (read and / or write) annotation of some type, typically annotation on an entry from a biological or biomedical database entity.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2408,Sequence feature analysis,,Analyse features in molecular sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2408,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0253,,,,,Analyse features in molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2409,Data handling,File processing|Report handling|File handling|Utility operation|Processing,"Basic (non-analytical) operations of some data, either a file or equivalent entity in memory, such that the same basic type of data is consumed as input and generated as output.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2409,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Basic (non-analytical) operations of some data, either a file or equivalent entity in memory, such that the same basic type of data is consumed as input and generated as output.",File processing|Report handling|File handling|Utility operation,Processing,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2410,Gene expression analysis,,Analyse gene expression and regulation data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2410,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Analyse gene expression and regulation data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2411,Structural profile processing,,Process (read and / or write) one or more structural (3D) profile(s) or template(s) of some type.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2411,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0297,,,,,Process (read and / or write) one or more structural (3D) profile(s) or template(s) of some type.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2412,Data index processing,,Process (read and / or write) an index of (typically a file of) biological data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2412,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0227,,,,,Process (read and / or write) an index of (typically a file of) biological data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2413,Sequence profile processing,,Process (read and / or write) some type of sequence profile.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2413,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0296,,,,,Process (read and / or write) some type of sequence profile.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2414,Protein function analysis,,"Analyse protein function, typically by processing protein sequence and/or structural data, and generate an informative report.",FALSE,,,http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2414,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse protein function, typically by processing protein sequence and/or structural data, and generate an informative report.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2415,Protein folding analysis,Protein folding modelling,"Analyse protein folding, typically by processing sequence and / or structural data, and write an informative report.",FALSE,,,http://edamontology.org/operation_2426|http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2415,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse protein folding, typically by processing sequence and / or structural data, and write an informative report.",Protein folding modelling,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2416,Protein secondary structure analysis,Secondary structure analysis (protein),Analyse known protein secondary structure data.,FALSE,,,http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2416,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse known protein secondary structure data.,Secondary structure analysis (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2417,Physicochemical property data processing,,Process (read and / or write) data on the physicochemical property of a molecule.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2417,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2945,,,,,Process (read and / or write) data on the physicochemical property of a molecule.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2419,Primer and probe design,Primer and probe prediction,Predict oligonucleotide primers or probes.,FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_3095,,beta12orEarlier,,,,,,,,,,,,operation_2419,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict oligonucleotide primers or probes.,Primer and probe prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2420,Operation (typed),,"Process (read and / or write) data of a specific type, for example applying analytical methods.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2420,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Process (read and / or write) data of a specific type, for example applying analytical methods.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2945,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2421,Database search,Search,"Search a database (or other data resource) with a supplied query and retrieve entries (or parts of entries) that are similar to the query.|Typically the query is compared to each entry and high scoring matches (hits) are returned. For example, a BLAST search of a sequence database.",FALSE,,,http://edamontology.org/operation_0224,,beta12orEarlier,,,,,,,,,,,,operation_2421,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Search a database (or other data resource) with a supplied query and retrieve entries (or parts of entries) that are similar to the query.,Search,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2422,Data retrieval,Information retrieval|Retrieval|Data retrieval (metadata)|Metadata retrieval,"Retrieve an entry (or part of an entry) from a data resource that matches a supplied query. This might include some primary data and annotation. The query is a data identifier or other indexed term. For example, retrieve a sequence record with the specified accession number, or matching supplied keywords.",FALSE,,,http://edamontology.org/operation_0224,,beta12orEarlier,,,,,,,,,,,,operation_2422,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Information retrieval,,,"Retrieve an entry (or part of an entry) from a data resource that matches a supplied query. This might include some primary data and annotation. The query is a data identifier or other indexed term. For example, retrieve a sequence record with the specified accession number, or matching supplied keywords.",Retrieval,Data retrieval (metadata)|Metadata retrieval,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2423,Prediction and recognition,Prediction|Recognition|Detection,"Predict, recognise, detect or identify some properties of a biomolecule.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2423,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise, detect or identify some properties of a biomolecule.",,Prediction|Recognition|Detection,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2424,Comparison,,Compare two or more things to identify similarities.,FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2424,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more things to identify similarities.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2425,Optimisation and refinement,,Refine or optimise some data model.,FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2425,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Refine or optimise some data model.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2426,Modelling and simulation,Mathematical modelling,"Model or simulate some biological entity or system, typically using mathematical techniques including  dynamical systems, statistical models, differential equations, and game theoretic models.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2426,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Model or simulate some biological entity or system, typically using mathematical techniques including  dynamical systems, statistical models, differential equations, and game theoretic models.",,Mathematical modelling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2427,Data handling,,Perform basic operations on some data or a database.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2427,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Perform basic operations on some data or a database.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2409,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2428,Validation,Quality control,Validate some data.,FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2428,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Validate some data.,,Quality control,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2429,Mapping,,"Map properties to positions on an biological entity (typically a molecular sequence or structure), or assemble such an entity from constituent parts.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2429,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Map properties to positions on an biological entity (typically a molecular sequence or structure), or assemble such an entity from constituent parts.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2430,Design,,Design a biological entity (typically a molecular sequence or structure) with specific properties.,FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2430,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Design a biological entity (typically a molecular sequence or structure) with specific properties.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2432,Microarray data processing,,Process (read and / or write) microarray data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2432,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Process (read and / or write) microarray data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2433,Codon usage table processing,,Process (read and / or write) a codon usage table.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2433,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0284|http://edamontology.org/operation_0285,,,,,Process (read and / or write) a codon usage table.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0286,,,,,,
http://edamontology.org/operation_2434,Data retrieval (codon usage table),,Retrieve a codon usage table and / or associated annotation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2434,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve a codon usage table and / or associated annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2435,Gene expression profile processing,,Process (read and / or write) a gene expression profile.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2435,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Process (read and / or write) a gene expression profile.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2436,Gene-set enrichment analysis,Gene-set over-represenation analysis|GO-term enrichment|Gene Ontology concept enrichment|Gene Ontology term enrichment,"Analysis of a set of genes, corresponding e.g. to a gene expression profile, annotated with Gene Ontology (GO) concepts, where eventual over-/under-representation of certain GO concept within the studied set of genes is revealed.|The Gene Ontology (GO) is typically used, the input is a set of Gene IDs, and the output of the analysis is typically a ranked list of GO concepts, each associated with a p-value.",FALSE,,,http://edamontology.org/operation_3501|http://edamontology.org/operation_3224|http://edamontology.org/operation_2495,,beta12orEarlier|1.8,,,,,,,,,,,,operation_2436,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analysis of a set of genes, corresponding e.g. to a gene expression profile, annotated with Gene Ontology (GO) concepts, where eventual over-/under-representation of certain GO concept within the studied set of genes is revealed.",Gene-set over-represenation analysis,,GO-term enrichment|Gene Ontology concept enrichment|Gene Ontology term enrichment,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2437,Gene regulatory network prediction,,Predict a network of gene regulation.,FALSE,,,http://edamontology.org/operation_3024|http://edamontology.org/operation_3439,,beta12orEarlier,,,,,,,,,,,,operation_2437,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict a network of gene regulation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2438,Pathway or network processing,,"Generate, analyse or handle a biological pathway or network.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2438,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate, analyse or handle a biological pathway or network.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2497,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2439,RNA secondary structure analysis,,Process (read and / or write) RNA secondary structure data.,FALSE,,,http://edamontology.org/operation_2481,,beta12orEarlier,,,,,,,,,,,,operation_2439,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) RNA secondary structure data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2440,Structure processing (RNA),,Process (read and / or write) RNA tertiary structure data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2440,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) RNA tertiary structure data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2480,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2441,RNA structure prediction,,Predict RNA tertiary structure.,FALSE,,,http://edamontology.org/operation_0475,,beta12orEarlier,,,,,,,,,,,,operation_2441,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict RNA tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2442,DNA structure prediction,,Predict DNA tertiary structure.,FALSE,,,http://edamontology.org/operation_0475,,beta12orEarlier,,,,,,,,,,,,operation_2442,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict DNA tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2443,Phylogenetic tree processing,,"Generate, process or analyse phylogenetic tree or trees.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2443,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate, process or analyse phylogenetic tree or trees.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0324,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2444,Protein secondary structure processing,,Process (read and / or write) protein secondary structure data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2444,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2416,,,,,Process (read and / or write) protein secondary structure data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2445,Protein interaction network processing,,Process (read and / or write) a network of protein interactions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2445,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0276,,,,,Process (read and / or write) a network of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2446,Sequence processing,,Process (read and / or write) one or more molecular sequences and associated annotation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2446,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2403,,,,,Process (read and / or write) one or more molecular sequences and associated annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2447,Sequence processing (protein),,Process (read and / or write) a protein sequence and associated annotation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2447,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) a protein sequence and associated annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2479,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2448,Sequence processing (nucleic acid),,Process (read and / or write) a nucleotide sequence and associated annotation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2448,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2478,,,,,Process (read and / or write) a nucleotide sequence and associated annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2451,Sequence comparison,,Compare two or more molecular sequences.,FALSE,,,http://edamontology.org/operation_2424|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2451,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2452,Sequence cluster processing,,Process (read and / or write) a sequence cluster.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2452,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0291,,,,,Process (read and / or write) a sequence cluster.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2453,Feature table processing,,Process (read and / or write) a sequence feature table.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2453,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2403,,,,,Process (read and / or write) a sequence feature table.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2454,Gene prediction,Gene finding|Gene calling|Gene and gene component prediction|Gene component prediction|Whole gene prediction,"Detect, predict and identify genes or components of genes in DNA sequences, including promoters, coding regions, splice sites, etc. |Methods for gene prediction might be ab initio, based on phylogenetic comparisons, use motifs, sequence features, support vector machine, alignment etc.",FALSE,,,http://edamontology.org/operation_0415,,beta12orEarlier,,,,,,,,,,,,operation_2454,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect, predict and identify genes or components of genes in DNA sequences, including promoters, coding regions, splice sites, etc. ",Gene finding|Gene calling|Gene and gene component prediction,Gene component prediction|Whole gene prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2456,GPCR classification,,Classify G-protein coupled receptors (GPCRs) into families and subfamilies.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2456,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Classify G-protein coupled receptors (GPCRs) into families and subfamilies.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2995,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_2457,GPCR coupling selectivity prediction,,Predict G-protein coupled receptor (GPCR) coupling selectivity.,FALSE,,,http://edamontology.org/operation_2492|http://edamontology.org/operation_0473|http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_2457,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict G-protein coupled receptor (GPCR) coupling selectivity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2459,Structure processing (protein),,Process (read and / or write) a protein tertiary structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2459,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) a protein tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2406,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2460,Protein atom surface calculation,,Calculate the solvent accessibility for each atom in a structure.|Waters are not considered.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2460,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility for each atom in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2461,Protein residue surface calculation,,Calculate the solvent accessibility for each residue in a structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2461,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility for each residue in a structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2462,Protein surface calculation,,Calculate the solvent accessibility of a structure as a whole.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2462,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the solvent accessibility of a structure as a whole.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0387,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2463,Sequence alignment processing,,Process (read and / or write) a molecular sequence alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2463,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0292,,,,,Process (read and / or write) a molecular sequence alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2464,Protein-protein interaction prediction,,"Identify or predict protein-protein interactions, interfaces, binding sites etc.",FALSE,,,http://edamontology.org/operation_1777|http://edamontology.org/operation_2492,,beta12orEarlier,,,,,,,,,,,,operation_2464,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict protein-protein interactions, interfaces, binding sites etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2465,Structure processing,,Process (read and / or write) a molecular tertiary structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2465,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2480,,,,,Process (read and / or write) a molecular tertiary structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2466,Map annotation,,Annotate a DNA map of some type with terms from a controlled vocabulary.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2466,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0362,,,,,Annotate a DNA map of some type with terms from a controlled vocabulary.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2467,Data retrieval (protein annotation),,Retrieve information on a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2467,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2468,Data retrieval (phylogenetic tree),,Retrieve a phylogenetic tree from a data resource.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2468,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve a phylogenetic tree from a data resource.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2469,Data retrieval (protein interaction annotation),,Retrieve information on a protein interaction.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2469,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on a protein interaction.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2470,Data retrieval (protein family annotation),,Retrieve information on a protein family.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2470,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on a protein family.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2471,Data retrieval (RNA family annotation),,Retrieve information on an RNA family.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2471,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on an RNA family.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2472,Data retrieval (gene annotation),,Retrieve information on a specific gene.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2472,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on a specific gene.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2473,Data retrieval (genotype and phenotype annotation),,Retrieve information on a specific genotype or phenotype.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2473,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2422,,,,,Retrieve information on a specific genotype or phenotype.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2474,Protein architecture comparison,,Compare the architecture of two or more protein structures.,FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_0247,,beta12orEarlier,,,,,,,,,,,,operation_2474,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare the architecture of two or more protein structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2475,Protein architecture recognition,,Identify the architecture of a protein structure.|Includes methods that try to suggest the most likely biological unit for a given protein X-ray crystal structure based on crystal symmetry and scoring of putative protein-protein interfaces.,FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_2996|http://edamontology.org/operation_0247,,beta12orEarlier,,,,,,,,,,,,operation_2475,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify the architecture of a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2476,Molecular dynamics simulation,,Simulate molecular (typically protein) conformation using a computational model of physical forces and computer simulation.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2426|http://edamontology.org/operation_2423,,beta12orEarlier,,,,,,,,,,,,operation_2476,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Simulate molecular (typically protein) conformation using a computational model of physical forces and computer simulation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2478,Nucleic acid sequence analysis,Sequence analysis (nucleic acid)|Sequence alignment analysis (nucleic acid)|Nucleic acid sequence alignment analysis,Analyse a nucleic acid sequence (using methods that are only applicable to nucleic acid sequences).,FALSE,,,http://edamontology.org/operation_2501|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2478,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a nucleic acid sequence (using methods that are only applicable to nucleic acid sequences).,Sequence analysis (nucleic acid),Sequence alignment analysis (nucleic acid)|Nucleic acid sequence alignment analysis,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2479,Protein sequence analysis,Sequence analysis (protein)|Protein sequence alignment analysis|Sequence alignment analysis (protein),Analyse a protein sequence (using methods that are only applicable to protein sequences).,FALSE,,,http://edamontology.org/operation_2502|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2479,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a protein sequence (using methods that are only applicable to protein sequences).,Sequence analysis (protein),Protein sequence alignment analysis|Sequence alignment analysis (protein),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2480,Structure analysis,,Analyse known molecular tertiary structures.,FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2480,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse known molecular tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2481,Nucleic acid structure analysis,,Analyse nucleic acid tertiary structural data.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2501,,beta12orEarlier,,,,,,,,,,,,operation_2481,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse nucleic acid tertiary structural data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2482,Secondary structure processing,,Process (read and / or write) a molecular secondary structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2482,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2480,,,,,Process (read and / or write) a molecular secondary structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2483,Structure comparison,,Compare two or more molecular tertiary structures.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2424,,beta12orEarlier,,,,,,,,,,,,operation_2483,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more molecular tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2485,Helical wheel drawing,Helical wheel rendering,Render a helical wheel representation of protein secondary structure.,FALSE,,,http://edamontology.org/operation_0570,,beta12orEarlier,,,,,,,,,,,,operation_2485,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render a helical wheel representation of protein secondary structure.,Helical wheel rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2486,Topology diagram drawing,Topology diagram rendering,Render a topology diagram of protein secondary structure.,FALSE,,,http://edamontology.org/operation_0570,,beta12orEarlier,,,,,,,,,,,,operation_2486,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render a topology diagram of protein secondary structure.,Topology diagram rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2487,Protein structure comparison,Structure comparison (protein),"Compare protein tertiary structures.|Methods might identify structural neighbors, find structural similarities or define a structural core.",FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_2502|http://edamontology.org/operation_2483,,beta12orEarlier,,,,,,,,,,,,operation_2487,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare protein tertiary structures.,Structure comparison (protein),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2488,Protein secondary structure comparison,Protein secondary structure|Secondary structure comparison (protein)|Protein secondary structure alignment,Compare protein secondary structures.,FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_2416,,beta12orEarlier,,,,,,,,,,,,operation_2488,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare protein secondary structures.,Protein secondary structure|Secondary structure comparison (protein),Protein secondary structure alignment,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2489,Protein subcellular localisation prediction,Protein targeting prediction,"Predict the subcellular localisation of a protein sequence.|The prediction might include subcellular localisation (nuclear, cytoplasmic, mitochondrial, chloroplast, plastid, membrane etc) or export (extracellular proteins) of a protein.",FALSE,,,http://edamontology.org/operation_1777|http://edamontology.org/operation_3023,,beta12orEarlier,,,,,,,,,,,,operation_2489,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the subcellular localisation of a protein sequence.,Protein targeting prediction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2490,Residue contact calculation (residue-residue),,Calculate contacts between residues in a protein structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2490,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate contacts between residues in a protein structure.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2950,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2491,Hydrogen bond calculation (inter-residue),,Identify potential hydrogen bonds between amino acid residues.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2491,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify potential hydrogen bonds between amino acid residues.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0394,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2492,Protein interaction prediction,,Predict the interactions of proteins with other molecules.,FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2492,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the interactions of proteins with other molecules.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2493,Codon usage data processing,,Process (read and / or write) codon usage data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2493,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0286,,,,,Process (read and / or write) codon usage data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2495,Gene expression analysis,Gene expression data analysis|RNA-seq analysis|Microarray data analysis,"Process (read and / or write) gene expression (typically microarray) data, including analysis of one or more gene expression profiles, typically to interpret them in functional terms.",FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2495,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Process (read and / or write) gene expression (typically microarray) data, including analysis of one or more gene expression profiles, typically to interpret them in functional terms.",Gene expression data analysis,RNA-seq analysis|Microarray data analysis,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2496,Gene regulatory network processing,,Process (read and / or write) a network of gene regulation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2496,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) a network of gene regulation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_1781,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2497,Pathway or network analysis,Network analysis|Pathway analysis,"Generate, process or analyse a biological pathway or network.",FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2497,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate, process or analyse a biological pathway or network.",Network analysis|Pathway analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2498,Sequencing-based expression profile data analysis,,"Analyse SAGE, MPSS or SBS experimental data, typically to identify or quantify mRNA transcripts.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2498,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,"Analyse SAGE, MPSS or SBS experimental data, typically to identify or quantify mRNA transcripts.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2499,Splicing model analysis,Splicing analysis,"Analyse, characterize and model alternative splicing events from comparing multiple nucleic acid sequences.",FALSE,,,http://edamontology.org/operation_2451|http://edamontology.org/operation_3024|http://edamontology.org/operation_2426,,beta12orEarlier,,,,,,,,,,,,operation_2499,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse, characterize and model alternative splicing events from comparing multiple nucleic acid sequences.",Splicing analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2500,Microarray raw data analysis,,Analyse raw microarray data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2500,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2495,,,,,Analyse raw microarray data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/operation_2501,Nucleic acid analysis,Nucleic acid data processing,Process (read and / or write) nucleic acid sequence or structural data.,FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2501,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) nucleic acid sequence or structural data.,Nucleic acid data processing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2502,Protein analysis,Protein data processing,Process (read and / or write) protein sequence or structural data.,FALSE,,,http://edamontology.org/operation_2945,,beta12orEarlier,,,,,,,,,,,,operation_2502,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) protein sequence or structural data.,Protein data processing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2503,Sequence data processing,,Process (read and / or write) molecular sequence data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2503,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) molecular sequence data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2403,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2504,Structural data processing,,Process (read and / or write) molecular structural data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2504,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2480,,,,,Process (read and / or write) molecular structural data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2505,Text processing,,Process (read and / or write) text.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2505,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_3778|http://edamontology.org/operation_0306,,,,,Process (read and / or write) text.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2506,Protein sequence alignment analysis,,"Analyse a protein sequence alignment, typically to detect features or make predictions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2506,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse a protein sequence alignment, typically to detect features or make predictions.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2479,,,,,,,,,,,,,1.18,http://edamontology.org/operation_3023|http://edamontology.org/operation_0258|http://edamontology.org/operation_2502,,,,,,
http://edamontology.org/operation_2507,Nucleic acid sequence alignment analysis,,"Analyse a protein sequence alignment, typically to detect features or make predictions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2507,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse a protein sequence alignment, typically to detect features or make predictions.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2478,,,,,,,,,,,,,1.18,http://edamontology.org/operation_3024|http://edamontology.org/operation_0258|http://edamontology.org/operation_2501,,,,,,
http://edamontology.org/operation_2508,Nucleic acid sequence comparison,,Compare two or more nucleic acid sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2508,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2451,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2998|http://edamontology.org/operation_2451|http://edamontology.org/operation_2478,,,,,,
http://edamontology.org/operation_2509,Protein sequence comparison,,Compare two or more protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2509,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2451,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2451,,,,,,
http://edamontology.org/operation_2510,DNA back-translation,,Back-translate a protein sequence into DNA.,FALSE,,,http://edamontology.org/operation_0233,,beta12orEarlier,,,,,,,,,,,,operation_2510,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Back-translate a protein sequence into DNA.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2511,Sequence editing (nucleic acid),,"Edit or change a nucleic acid sequence, either randomly or specifically.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2511,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit or change a nucleic acid sequence, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0231,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_2512,Sequence editing (protein),,"Edit or change a protein sequence, either randomly or specifically.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2512,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit or change a protein sequence, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0231,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_2513,Sequence generation (nucleic acid),,Generate a nucleic acid sequence by some means.,FALSE,,,http://edamontology.org/operation_0230,,beta12orEarlier,,,,,,,,,,,,operation_2513,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a nucleic acid sequence by some means.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2514,Sequence generation (protein),,Generate a protein sequence by some means.,FALSE,,,http://edamontology.org/operation_0230|http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2514,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a protein sequence by some means.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2515,Nucleic acid sequence visualisation,,"Visualise, format or render a nucleic acid sequence.|Various nucleic acid sequence analysis methods might generate a sequence rendering but are not (for brevity) listed under here.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2515,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render a nucleic acid sequence.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0564,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_2516,Protein sequence visualisation,,"Visualise, format or render a protein sequence.|Various protein sequence analysis methods might generate a sequence rendering but are not (for brevity) listed under here.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2516,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render a protein sequence.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0564,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/operation_2518,Nucleic acid structure comparison,Structure comparison (nucleic acid),Compare nucleic acid tertiary structures.,FALSE,,,http://edamontology.org/operation_2998|http://edamontology.org/operation_2481|http://edamontology.org/operation_2483,,beta12orEarlier,,,,,,,,,,,,operation_2518,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare nucleic acid tertiary structures.,Structure comparison (nucleic acid),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2519,Structure processing (nucleic acid),,Process (read and / or write) nucleic acid tertiary structure data.|http://edamontology.org/operation_2481,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2519,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process (read and / or write) nucleic acid tertiary structure data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2480,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2520,DNA mapping,,Generate a map of a DNA sequence annotated with positional or non-positional features of some type.,FALSE,,,http://edamontology.org/operation_2429,,beta12orEarlier,,,,,,,,,,,,operation_2520,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a map of a DNA sequence annotated with positional or non-positional features of some type.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2521,Map data processing,,Process (read and / or write) a DNA map of some type.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2521,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2520,,,,,Process (read and / or write) a DNA map of some type.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2574,Protein hydropathy calculation,,"Analyse the hydrophobic, hydrophilic or charge properties of a protein (from analysis of sequence or structural information).",FALSE,,,http://edamontology.org/operation_0250,,beta12orEarlier,,,,,,,,,,,,operation_2574,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse the hydrophobic, hydrophilic or charge properties of a protein (from analysis of sequence or structural information).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2575,Protein binding site prediction,Binding site prediction|Protein binding site detection|Ligand-binding site prediction| Active site prediction,"Identify or predict catalytic residues, active sites or other ligand-binding sites in protein sequences or structures.",FALSE,,,http://edamontology.org/operation_2492|http://edamontology.org/operation_3092,,beta12orEarlier,,,,,,,,,,,,operation_2575,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify or predict catalytic residues, active sites or other ligand-binding sites in protein sequences or structures.",Binding site prediction|Protein binding site detection,Ligand-binding site prediction| Active site prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2871,Sequence tagged site (STS) mapping,Sequence mapping,"Generate a physical DNA map (sequence map) from analysis of sequence tagged sites (STS).|An STS is a short subsequence of known sequence and location that occurs only once in the chromosome or genome that is being mapped. Sources of STSs include 1. expressed sequence tags (ESTs), simple sequence length polymorphisms (SSLPs), and random genomic sequences from cloned genomic DNA or database sequences.",FALSE,,,http://edamontology.org/operation_2944,,beta12orEarlier,,,,,,,,,,,,operation_2871,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a physical DNA map (sequence map) from analysis of sequence tagged sites (STS).,Sequence mapping,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2928,Alignment,Alignment construction|Alignment generation,"Compare two or more entities, typically the sequence or structure (or derivatives) of macromolecules, to identify equivalent subunits.",FALSE,,,http://edamontology.org/operation_0004|http://edamontology.org/operation_3429,,beta12orEarlier,,,,,,,,,,,,operation_2928,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare two or more entities, typically the sequence or structure (or derivatives) of macromolecules, to identify equivalent subunits.",Alignment construction|Alignment generation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2929,Protein fragment weight comparison,Protein fingerprinting|PMF|Peptide mass fingerprinting,Calculate the molecular weight of a protein (or fragments) and compare it to another protein or reference data. Generally used for protein identification.,FALSE,,,http://edamontology.org/operation_2930|http://edamontology.org/operation_0398,,beta12orEarlier,,,,,,,,,,,,operation_2929,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the molecular weight of a protein (or fragments) and compare it to another protein or reference data. Generally used for protein identification.,Protein fingerprinting|PMF|Peptide mass fingerprinting,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2930,Protein property comparison,,Compare the physicochemical properties of two or more proteins (or reference data).,FALSE,,,http://edamontology.org/operation_2997,,beta12orEarlier,,,,,,,,,,,,operation_2930,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare the physicochemical properties of two or more proteins (or reference data).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2931,Secondary structure comparison,,Compare two or more molecular secondary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2931,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2518|http://edamontology.org/operation_2487,,,,,Compare two or more molecular secondary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2424,,,,,,
http://edamontology.org/operation_2932,Hopp and Woods plotting,,Generate a Hopp and Woods plot of antigenicity of a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2932,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a Hopp and Woods plot of antigenicity of a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0252,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_2934,Cluster textual view generation,Microarray cluster textual view generation,"Generate a view of clustered quantitative data, annotated with textual information.",FALSE,,,http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2934,,,,,,,,,,,,,,,,,,,,,,,,,,"In the case of microarray data, visualise gene clusters with gene names.",,,,,,"Generate a view of clustered quantitative data, annotated with textual information.",,Microarray cluster textual view generation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2935,Wave graph plotting,Microarray wave graph rendering|Microarray wave graph plotting|Microarray cluster temporal graph rendering,"Visualise clustered quantitative data as a set of waves, where each wave corresponds to a certain entity or sample on the X-axis.|In the case of microarray data, visualise clustered gene expression data as a set of waves, where each wave corresponds to a gene across samples on the X-axis.|This view can be rendered as a pie graph.  The distance matrix is sorted by cluster number and typically represented as a diagonal matrix with distance values displayed in different color shades.",FALSE,,,http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2935,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise clustered quantitative data as a set of waves, where each wave corresponds to a certain entity or sample on the X-axis.",,Microarray wave graph rendering|Microarray wave graph plotting|Microarray cluster temporal graph rendering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2936,Dendrograph plotting,Microarray view rendering|Microarray checks view rendering|Microarray dendrograph rendering|Microarray dendrograph plotting,"Generate a dendrograph of raw, preprocessed or clustered expression (e.g. microarray) data.",FALSE,,,http://edamontology.org/operation_0571,,beta12orEarlier,,,,,,,,,,,,operation_2936,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a dendrograph of raw, preprocessed or clustered expression (e.g. microarray) data.",,Microarray view rendering|Microarray checks view rendering|Microarray dendrograph rendering|Microarray dendrograph plotting,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2937,Proximity map plotting,Microarray distance map rendering|Microarray proximity map plotting|Microarray proximity map rendering,Generate a plot of distances (distance matrix) between genes.,FALSE,,,http://edamontology.org/operation_0571,,beta12orEarlier,,,,,,,,,,,,operation_2937,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a plot of distances (distance matrix) between genes.,,Microarray distance map rendering|Microarray proximity map plotting|Microarray proximity map rendering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2938,Expression data tree or dendrogram rendering,Microarray tree or dendrogram rendering|Microarray matrix tree plot rendering|Microarray 2-way dendrogram rendering,"Visualise clustered gene expression data using a gene tree, array tree and color coded band of gene expression.",FALSE,,,http://edamontology.org/operation_0571,,beta12orEarlier,,,,,,,,,,,,operation_2938,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise clustered gene expression data using a gene tree, array tree and color coded band of gene expression.",,Microarray tree or dendrogram rendering|Microarray matrix tree plot rendering|Microarray 2-way dendrogram rendering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2939,Principal component plotting,Microarray principal component rendering|Microarray principal component plotting,"Generate a line graph drawn as sum of principal components (Eigen value) and, for example in the case of microarray data, individual expression values.",FALSE,,,http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2939,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a line graph drawn as sum of principal components (Eigen value) and, for example in the case of microarray data, individual expression values.",,Microarray principal component rendering|Microarray principal component plotting,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2940,Scatter plot plotting,Microarray scatter plot rendering|Microarray scatter plot plotting,"Generate a scatter plot of quantitative data, typically after principal component analysis.",FALSE,,,http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2940,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a scatter plot of quantitative data, typically after principal component analysis.",Microarray scatter plot rendering,Microarray scatter plot plotting,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2941,Whole microarray graph plotting,,Visualise gene expression data where each band (or line graph) corresponds to a sample.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2941,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Visualise gene expression data where each band (or line graph) corresponds to a sample.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0571,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0571,,,,,,
http://edamontology.org/operation_2942,Expression data tree-map rendering,Microarray tree-map rendering,Visualise gene expression data after hierarchical clustering for representing hierarchical relationships.,FALSE,,,http://edamontology.org/operation_0571,,beta12orEarlier,,,,,,,,,,,,operation_2942,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Visualise gene expression data after hierarchical clustering for representing hierarchical relationships.,,Microarray tree-map rendering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2943,Box-Whisker plot plotting,Box plot plotting|Microarray Box-Whisker plot plotting,"Generate a box plot, i.e. a depiction of groups of numerical data through their quartiles.",FALSE,,,http://edamontology.org/operation_3441,,beta12orEarlier,,,,,,,,,,,,operation_2943,,,,,,,,,,,,,,,,,,,,,,,,,,"In the case of micorarray data, visualise raw and pre-processed gene expression data, via a plot showing over- and under-expression along with mean, upper and lower quartiles.",,,,,,"Generate a box plot, i.e. a depiction of groups of numerical data through their quartiles.",Box plot plotting,Microarray Box-Whisker plot plotting,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2944,Physical mapping,,"Generate a physical (sequence) map of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers.",FALSE,,,http://edamontology.org/operation_2520,,beta12orEarlier,,,,,,,,,,,,operation_2944,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a physical (sequence) map of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2945,Analysis,,"Apply analytical methods to existing data of a specific type.|This excludes non-analytical methods that read and write the same basic type of data (for that, see 'Data handling').",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2945,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Apply analytical methods to existing data of a specific type.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2946,Alignment analysis,,Process or analyse an alignment of molecular sequences or structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2946,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2928,,,,,Process or analyse an alignment of molecular sequences or structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2947,Article analysis,,Analyse a body of scientific text (typically a full text article from a scientific journal.),TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2947,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_3778|http://edamontology.org/operation_0306,,,,,Analyse a body of scientific text (typically a full text article from a scientific journal.),,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.16,,,,,,,
http://edamontology.org/operation_2948,Molecular interaction analysis,,Analyse the interactions of two or more molecules (or parts of molecules) that are known to interact.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2948,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2949,,,,,Analyse the interactions of two or more molecules (or parts of molecules) that are known to interact.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2949,Protein interaction analysis,,"Analyse known protein-protein, protein-DNA/RNA or protein-ligand interactions.",FALSE,,,http://edamontology.org/operation_2502,,beta12orEarlier,,,,,,,,,,,,operation_2949,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse known protein-protein, protein-DNA/RNA or protein-ligand interactions.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2950,Residue distance calculation,Residue contact calculation (residue-metal)|WHATIF:SymmetryContact|Residue contact calculation (residue-nucleic acid)|HET group detection|Residue contact calculation (residue-negative ion)|Residue contact calculation (residue-ligand),"Calculate contacts between residues, or between residues and other groups, in a protein structure, on the basis of distance calculations.|This includes identifying HET groups, which usually correspond to ligands, lipids, but might also (not consistently) include groups that are attached to amino acids. Each HET group is supposed to have a unique three letter code and a unique name which might be given in the output.  It can also include calculation of symmetry contacts, i.e. a contact between two atoms in different asymmetric unit.",FALSE,,,http://edamontology.org/operation_0248,,beta12orEarlier,,,,,,,,,,,,operation_2950,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,WHATIF:HasNegativeIonContacts|WHATIF:ShowProteiNucleicContacts|WHATIF:ShowDrugContacts|WHATIF:HasNucleicContacts|WHATIF:HasMetalContactsPlus|WHATIF:ShowDrugContactsShort|WHATIF: HETGroupNames|WHATIF:HasNegativeIonContactsPlus|WHATIF:ShowLigandContacts|WHATIF:HasMetalContacts,"Calculate contacts between residues, or between residues and other groups, in a protein structure, on the basis of distance calculations.",,Residue contact calculation (residue-metal)|WHATIF:SymmetryContact|Residue contact calculation (residue-nucleic acid)|HET group detection|Residue contact calculation (residue-negative ion)|Residue contact calculation (residue-ligand),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2951,Alignment processing,,"Process (read and / or write) an alignment of two or more molecular sequences, structures or derived data.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2951,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295|http://edamontology.org/operation_0292,,,,,"Process (read and / or write) an alignment of two or more molecular sequences, structures or derived data.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2952,Structure alignment processing,,Process (read and / or write) a molecular tertiary (3D) structure alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2952,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0295,,,,,Process (read and / or write) a molecular tertiary (3D) structure alignment.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_2962,Codon usage bias calculation,,Calculate codon usage bias.,FALSE,,,http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_2962,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate codon usage bias.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2963,Codon usage bias plotting,,Generate a codon usage bias plot.,FALSE,,,http://edamontology.org/operation_3441|http://edamontology.org/operation_2962,,beta12orEarlier,,,,,,,,,,,,operation_2963,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a codon usage bias plot.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2964,Codon usage fraction calculation,,"Calculate the differences in codon usage fractions between two sequences, sets of sequences, codon usage tables etc.",FALSE,,,http://edamontology.org/operation_0286,,beta12orEarlier,,,,,,,,,,,,operation_2964,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate the differences in codon usage fractions between two sequences, sets of sequences, codon usage tables etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2990,Classification,,"Assign molecular sequences, structures or other biological data to a specific group or category according to qualities it shares with that group or category.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_2990,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Assign molecular sequences, structures or other biological data to a specific group or category according to qualities it shares with that group or category.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_2993,Molecular interaction data processing,,Process (read and / or write) molecular interaction data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_2993,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2949,,,,,Process (read and / or write) molecular interaction data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/operation_2995,Sequence classification,,Assign molecular sequence(s) to a group or category.,FALSE,,,http://edamontology.org/operation_2990|http://edamontology.org/operation_2403,,beta12orEarlier,,,,,,,,,,,,operation_2995,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign molecular sequence(s) to a group or category.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2996,Structure classification,,Assign molecular structure(s) to a group or category.,FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_2990,,beta12orEarlier,,,,,,,,,,,,operation_2996,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Assign molecular structure(s) to a group or category.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2997,Protein comparison,,Compare two or more proteins (or some aspect) to identify similarities.,FALSE,,,http://edamontology.org/operation_2424,,beta12orEarlier,,,,,,,,,,,,operation_2997,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more proteins (or some aspect) to identify similarities.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_2998,Nucleic acid comparison,,Compare two or more nucleic acids to identify similarities.,FALSE,,,http://edamontology.org/operation_2424,,beta12orEarlier,,,,,,,,,,,,operation_2998,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more nucleic acids to identify similarities.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3023,Prediction and recognition (protein),,"Predict, recognise, detect or identify some properties of proteins.",FALSE,,,http://edamontology.org/operation_2423,,beta12orEarlier,,,,,,,,,,,,operation_3023,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise, detect or identify some properties of proteins.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3024,Prediction and recognition (nucleic acid),,"Predict, recognise, detect or identify some properties of nucleic acids.",FALSE,,,http://edamontology.org/operation_2423,,beta12orEarlier,,,,,,,,,,,,operation_3024,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise, detect or identify some properties of nucleic acids.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3080,Structure editing,,"Edit, convert or otherwise change a  molecular tertiary structure, either randomly or specifically.",FALSE,,,http://edamontology.org/operation_3096,,beta13,,,,,,,,,,,,operation_3080,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit, convert or otherwise change a  molecular tertiary structure, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3081,Sequence alignment editing,,"Edit, convert or otherwise change a molecular sequence alignment, either randomly or specifically.",FALSE,,,http://edamontology.org/operation_3096,,beta13,,,,,,,,,,,,operation_3081,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit, convert or otherwise change a molecular sequence alignment, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3083,Pathway or network visualisation,Pathway or network rendering,Render (visualise) a biological pathway or network.,FALSE,,,http://edamontology.org/operation_0337|http://edamontology.org/operation_2497,,beta13,,,,,,,,,,,,operation_3083,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render (visualise) a biological pathway or network.,Pathway or network rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3084,Protein function prediction (from sequence),,"Predict general (non-positional) functional properties of a protein from analysing its sequence.|For functional properties that are positional, use 'Protein site detection' instead.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,operation_3084,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_1777,,,,,Predict general (non-positional) functional properties of a protein from analysing its sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_3087,Protein sequence feature detection,,"Predict, recognise and identify functional or other key sites within protein sequences, typically by scanning for known motifs, patterns and regular expressions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,"(jison)This is a distinction made on basis of input; all features exist can be mapped to a sequence so this isn't needed (consolidate with ""Protein feature detection"").",,,,,,,,,,operation_3087,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise and identify functional or other key sites within protein sequences, typically by scanning for known motifs, patterns and regular expressions.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3092,,,,,,,,,,,,,1.17,http://edamontology.org/operation_0253|http://edamontology.org/operation_3092|http://edamontology.org/operation_2479,,,,,,
http://edamontology.org/operation_3088,Protein property calculation (from sequence),,"Calculate (or predict) physical or chemical properties of a protein, including any non-positional properties of the molecular sequence, from processing a protein sequence.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,operation_3088,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Calculate (or predict) physical or chemical properties of a protein, including any non-positional properties of the molecular sequence, from processing a protein sequence.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0250,,,,,,,,,,,,,1.18,http://edamontology.org/operation_2479|http://edamontology.org/operation_0250,,,,,,
http://edamontology.org/operation_3090,Protein feature prediction (from structure),,"Predict, recognise and identify positional features in proteins from analysing protein structure.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,operation_3090,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_3092,,,,,"Predict, recognise and identify positional features in proteins from analysing protein structure.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_3092,Protein feature detection,Protein feature recognition|Protein feature prediction|Protein site recognition|Sequence profile database search|Protein site detection|Protein site prediction|Sequence feature detection (protein)|Protein secondary database search,"Predict, recognise and identify positional features in proteins from analysing protein sequences or structures.|Features includes functional sites or regions, secondary structure, structural domains and so on. Methods might use fingerprints, motifs, profiles, hidden Markov models, sequence alignment etc to provide a mapping of a query protein sequence to a discriminatory element. This includes methods that search a secondary protein database (Prosite, Blocks, ProDom, Prints, Pfam etc.) to assign a protein sequence(s) to a known protein family or group.
",FALSE,,,http://edamontology.org/operation_3023|http://edamontology.org/operation_2502,,beta13,,,,,,,,,,,,operation_3092,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise and identify positional features in proteins from analysing protein sequences or structures.",Protein feature recognition|Protein feature prediction,Protein site recognition|Sequence profile database search|Protein site detection|Protein site prediction|Sequence feature detection (protein)|Protein secondary database search,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3093,Database search (by sequence),,Screen a molecular sequence(s) against a database (of some type) to identify similarities between the sequence and database entries.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,operation_3093,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_2421,,,,,Screen a molecular sequence(s) against a database (of some type) to identify similarities between the sequence and database entries.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_3094,Protein interaction network prediction,,Predict a network of protein interactions.,FALSE,,,http://edamontology.org/operation_3439,,beta13,,,,,,,,,,,,operation_3094,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict a network of protein interactions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3095,Nucleic acid design,,Design (or predict) nucleic acid sequences with specific chemical or physical properties.,FALSE,,,http://edamontology.org/operation_2430|http://edamontology.org/operation_2478,,beta13,,,,,,,,,,,,operation_3095,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Design (or predict) nucleic acid sequences with specific chemical or physical properties.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3096,Editing,,"Edit a data entity, either randomly or specifically.",FALSE,,,http://edamontology.org/operation_2409,,beta13,,,,,,,,,,,,operation_3096,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Edit a data entity, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3180,Sequence assembly validation,Assembly QC|Sequence assembly QC|Assembly quality evaluation|Sequence assembly quality evaluation,"Evaluate a DNA sequence assembly, typically for purposes of quality control.",FALSE,,,http://edamontology.org/operation_2428|http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3180,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Evaluate a DNA sequence assembly, typically for purposes of quality control.",Assembly QC|Sequence assembly QC|Assembly quality evaluation|Sequence assembly quality evaluation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3182,Genome alignment,Genome alignment construction,Align two or more (tpyically huge) molecular sequences that represent genomes.,FALSE,,,http://edamontology.org/operation_0292,,1.1,,,,,,,,,,,,operation_3182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align two or more (tpyically huge) molecular sequences that represent genomes.,Genome alignment construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3183,Localised reassembly,,Reconstruction of a sequence assembly in a localised area.,FALSE,,,http://edamontology.org/operation_0310,,1.1,,,,,,,,,,,,operation_3183,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reconstruction of a sequence assembly in a localised area.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3184,Sequence assembly visualisation,Assembly visualisation|Assembly rendering|Sequence assembly rendering,Render and visualise a DNA sequence assembly.,FALSE,,,http://edamontology.org/operation_0564,,1.1,,,,,,,,,,,,operation_3184,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Render and visualise a DNA sequence assembly.,Assembly visualisation|Assembly rendering|Sequence assembly rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3185,Base-calling,Base calling|Phred base calling|Phred base-calling,Identify base (nucleobase) sequence from a fluorescence 'trace' data generated by an automated DNA sequencer.,FALSE,,,http://edamontology.org/operation_2513,,1.1,,,,,,,,,,,,operation_3185,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify base (nucleobase) sequence from a fluorescence 'trace' data generated by an automated DNA sequencer.,Base calling|Phred base calling|Phred base-calling,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3186,Bisulfite mapping,Bisulfite sequence alignment|Bisulfite sequence mapping,"The mapping of methylation sites in a DNA (genome) sequence.|Bisulfite mapping follows high-throughput sequencing of DNA which has undergone bisulfite treatment followed by PCR amplification; unmethylated cytosines are specifically converted to thymine, allowing the methylation status of cytosine in the DNA to be detected.",FALSE,,,http://edamontology.org/operation_2944,,1.1,,,,,,,,,,,,operation_3186,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The mapping of methylation sites in a DNA (genome) sequence.,Bisulfite sequence alignment|Bisulfite sequence mapping,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3187,Sequence contamination filtering,,Identify and filter a (typically large) sequence data set to remove sequences from contaminants in the sample that was sequenced.,FALSE,,,http://edamontology.org/operation_2478,,beta12orEarlier,,,,,,,,,,,,operation_3187,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify and filter a (typically large) sequence data set to remove sequences from contaminants in the sample that was sequenced.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3189,Trim ends,,"Trim sequences (typically from an automated DNA sequencer) to remove misleading ends.|For example trim polyA tails, introns and primer sequence flanking the sequence of amplified exons, or other unwanted sequence.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,operation_3189,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Trim sequences (typically from an automated DNA sequencer) to remove misleading ends.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3192,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3190,Trim vector,,"Trim sequences (typically from an automated DNA sequencer) to remove sequence-specific end regions, typically contamination from vector sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,operation_3190,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Trim sequences (typically from an automated DNA sequencer) to remove sequence-specific end regions, typically contamination from vector sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3192,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3191,Trim to reference,,Trim sequences (typically from an automated DNA sequencer) to remove the sequence ends that extend beyond an assembled reference sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,operation_3191,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Trim sequences (typically from an automated DNA sequencer) to remove the sequence ends that extend beyond an assembled reference sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3192,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3192,Sequence trimming,Trimming|Trim vector|Trim ends|Barcode sequence removal|Trim to reference,"Cut (remove) the end from a molecular sequence.|This includes

ennd trimming
Trim sequences (typically from an automated DNA sequencer) to remove misleading ends.
For example trim polyA tails, introns and primer sequence flanking the sequence of amplified exons, or other unwanted sequence.

trimming to a reference sequence, 
Trim sequences (typically from an automated DNA sequencer) to remove the sequence ends that extend beyond an assembled reference sequence.

vector trimming
Trim sequences (typically from an automated DNA sequencer) to remove sequence-specific end regions, typically contamination from vector sequences.
",FALSE,,,http://edamontology.org/operation_0369,,1.1,,,,,,,,,,,,operation_3192,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cut (remove) the end from a molecular sequence.,Trimming,Trim vector|Trim ends|Barcode sequence removal|Trim to reference,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3194,Genome feature comparison,,"Compare the features of two genome sequences.|Genomic elements that might be compared include genes, indels, single nucleotide polymorphisms (SNPs), retrotransposons, tandem repeats and so on.",FALSE,,,http://edamontology.org/operation_0256,,1.1,,,,,,,,,,,,operation_3194,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare the features of two genome sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3195,Sequencing error detection,Short read error correction|Short-read error correction,Detect errors in DNA sequences generated from sequencing projects).,FALSE,,,http://edamontology.org/operation_2451,,beta12orEarlier,,,,,,,,,,,,operation_3195,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Detect errors in DNA sequences generated from sequencing projects).,Short read error correction|Short-read error correction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3196,Genotyping,,"Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.|Methods might consider cytogenetic analyses, copy number polymorphism (and calculate copy number calls for copy-number variation(CNV) regions), single nucleotide polymorphism (SNP), , rare copy number variation (CNV) identification, loss of heterozygosity data and so on.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3196,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3197,Genetic variation analysis,Genetic variation annotation|Variant analysis|Sequence variation analysis,"Analyse a genetic variation, for example to annotate its location, alleles, classification, and effects on individual transcripts predicted for a gene model.|Genetic variation annotation provides contextual interpretation of coding SNP consequences in transcripts. It allows comparisons to be made between variation data in different populations or strains for the same transcript.",FALSE,,,http://edamontology.org/operation_0415,,1.1,,,,,,,,,,,,operation_3197,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse a genetic variation, for example to annotate its location, alleles, classification, and effects on individual transcripts predicted for a gene model.",Genetic variation annotation|Variant analysis|Sequence variation analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3198,Read mapping,Short oligonucleotide alignment|Oligonucleotide alignment|Short read mapping|Short sequence read mapping|Oligonucleotide alignment generation|Read alignment|Oligonucleotide mapping|Oligonucleotide alignment construction|Short read alignment,"Align short oligonucleotide sequences (reads) to a larger (genomic) sequence.|The purpose of read mapping is to identify the location of sequenced fragments within a reference genome and assumes that there is, in fact, at least local similarity between the fragment and reference sequences.",FALSE,,,http://edamontology.org/operation_0292|http://edamontology.org/operation_2944,,1.1,,,,,,,,,,,,operation_3198,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Align short oligonucleotide sequences (reads) to a larger (genomic) sequence.,Short oligonucleotide alignment|Oligonucleotide alignment|Short read mapping|Short sequence read mapping|Oligonucleotide alignment generation|Read alignment|Oligonucleotide mapping|Oligonucleotide alignment construction|Short read alignment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3199,Split read mapping,Split-read mapping,A varient of oligonucleotide mapping where a read is mapped to two separate locations because of possible structural variation.,FALSE,,,http://edamontology.org/operation_3198,,1.1,,,,,,,,,,,,operation_3199,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A varient of oligonucleotide mapping where a read is mapped to two separate locations because of possible structural variation.,Split-read mapping,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3200,Community profiling,Sample barcoding|DNA barcoding,Analyse DNA sequences in order to identify a DNA 'barcode'; marker genes or any short fragment(s) of DNA that are useful to diagnose the taxa of biological organisms.,FALSE,,,http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3200,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse DNA sequences in order to identify a DNA 'barcode'; marker genes or any short fragment(s) of DNA that are useful to diagnose the taxa of biological organisms.,Sample barcoding,DNA barcoding,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3201,SNP calling,,"Identify single nucleotide change in base positions in sequencing data that differ from a reference genome and which might, especially by reference to population frequency or functional data, indicate a polymorphism.|Operations usually score confidence in the prediction or some other statistical measure of evidence.",FALSE,,,http://edamontology.org/operation_0484,,1.1,,,,,,,,,,,,operation_3201,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify single nucleotide change in base positions in sequencing data that differ from a reference genome and which might, especially by reference to population frequency or functional data, indicate a polymorphism.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3202,Polymorphism detection,Polymorphism detection|Mutation detection|de novo mutation detection,"Detect mutations in multiple DNA sequences, for example, from the alignment and comparison of the fluorescent traces produced by DNA sequencing hardware.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3202,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect mutations in multiple DNA sequences, for example, from the alignment and comparison of the fluorescent traces produced by DNA sequencing hardware.",Polymorphism detection,Mutation detection|de novo mutation detection,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3203,Chromatogram visualisation,Chromatogram viewing,"Visualise, format or render an image of a Chromatogram.",FALSE,,,http://edamontology.org/operation_0337,,1.1,,,,,,,,,,,,operation_3203,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render an image of a Chromatogram.",Chromatogram viewing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3204,Methylation analysis,,Determine cytosine methylation states in nucleic acid sequences.,FALSE,,,http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3204,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Determine cytosine methylation states in nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3205,Methylation calling,,Determine cytosine methylation status of specific positions in a nucleic acid sequences.,FALSE,,,http://edamontology.org/operation_3204|http://edamontology.org/operation_2944,,1.1,,,,,,,,,,,,operation_3205,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Determine cytosine methylation status of specific positions in a nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3206,Methylation level analysis (global),Global methylation analysis,"Measure the overall level of methyl cytosines in a genome from analysis of experimental data, typically from chromatographic methods and methyl accepting capacity assay.",FALSE,,,http://edamontology.org/operation_3205,,1.1,,,,,,,,,,,,operation_3206,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Measure the overall level of methyl cytosines in a genome from analysis of experimental data, typically from chromatographic methods and methyl accepting capacity assay.",Global methylation analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3207,Methylation level analysis (gene-specific),Gene-specific methylation analysis,Measure the level of methyl cytosines in specific genes.|Many different techniques are available for this.,FALSE,,,http://edamontology.org/operation_3205,,1.1,,,,,,,,,,,,operation_3207,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Measure the level of methyl cytosines in specific genes.,Gene-specific methylation analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3208,Genome visualisation,Genome rendering|Genome viewing|Genome browser|Genome browsing,"Visualise, format or render a nucleic acid sequence that is part of (and in context of) a complete genome sequence.",FALSE,,,http://edamontology.org/operation_0564,,1.1,,,,,,,,,,,,operation_3208,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render a nucleic acid sequence that is part of (and in context of) a complete genome sequence.",Genome rendering|Genome viewing|Genome browser|Genome browsing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3209,Genome comparison,Genomic region matching,"Compare the sequence or features of two or more genomes, for example, to find matching regions.",FALSE,,,http://edamontology.org/operation_2451,,1.1,,,,,,,,,,,,operation_3209,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare the sequence or features of two or more genomes, for example, to find matching regions.",Genomic region matching,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3211,Genome indexing,Burrows-Wheeler|Genome indexing (Burrows-Wheeler)|Suffix arrays|Genome indexing (suffix arrays),Generate an index of a genome sequence.|Many sequence alignment tasks involving many or very large sequences rely on a precomputed index of the sequence to accelerate the alignment.  The Burrows-Wheeler Transform (BWT) is a permutation of the genome based on a suffix array algorithm.  A suffix array consists of the lexicographically sorted list of suffixes of a genome.,FALSE,,,http://edamontology.org/operation_0227,,1.1,,,,,,,,,,,,operation_3211,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate an index of a genome sequence.,,Burrows-Wheeler|Genome indexing (Burrows-Wheeler)|Suffix arrays|Genome indexing (suffix arrays),,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3212,Genome indexing (Burrows-Wheeler),,Generate an index of a genome sequence using the Burrows-Wheeler algorithm.|The Burrows-Wheeler Transform (BWT) is a permutation of the genome based on a suffix array algorithm.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,operation_3212,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate an index of a genome sequence using the Burrows-Wheeler algorithm.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3211,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3213,Genome indexing (suffix arrays),,Generate an index of a genome sequence using a suffix arrays algorithm.|A suffix array consists of the lexicographically sorted list of suffixes of a genome.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,operation_3213,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate an index of a genome sequence using a suffix arrays algorithm.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3211,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3214,Spectral analysis,Spectrum analysis|Mass spectrum analysis,Analyse one or more spectra from mass spectrometry (or other) experiments.,FALSE,,,http://edamontology.org/operation_2945,,1.1,,,,,,,,,,,,operation_3214,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse one or more spectra from mass spectrometry (or other) experiments.,Spectrum analysis|Mass spectrum analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3215,Peak detection,Peak assignment|Peak finding,"Identify peaks in a spectrum from a mass spectrometry, NMR, or some other spectrum-generating experiment.",FALSE,,,http://edamontology.org/operation_3214,,1.1,,,,,,,,,,,,operation_3215,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify peaks in a spectrum from a mass spectrometry, NMR, or some other spectrum-generating experiment.",Peak assignment|Peak finding,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3216,Scaffolding,Scaffold construction|Scaffold generation,"Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length.  The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.|Scaffold may be positioned along a chromosome physical map to create a ""golden path"".",FALSE,,,http://edamontology.org/operation_0310|http://edamontology.org/operation_3429,,1.1,,,,,,,,,,,,operation_3216,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length.  The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.",Scaffold construction|Scaffold generation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3217,Scaffold gap completion,,"Fill the gaps in a sequence assembly (scaffold) by merging in additional sequences.|Different techniques are used to generate gap sequences to connect contigs, depending on the size of the gap. For small (5-20kb) gaps, PCR amplification and sequencing is used.  For large (>20kb) gaps, fragments are cloned (e.g. in BAC (Bacterial artificial chromosomes) vectors) and then sequenced.",FALSE,,,http://edamontology.org/operation_3216,,1.1,,,,,,,,,,,,operation_3217,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Fill the gaps in a sequence assembly (scaffold) by merging in additional sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3218,Sequencing quality control,Sequencing QC|Sequencing quality assessment,Raw sequence data quality control.|Analyse raw sequence data from a sequencing pipeline and identify (and possiby fix) problems.,FALSE,,,http://edamontology.org/operation_2428|http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3218,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Raw sequence data quality control.,Sequencing QC|Sequencing quality assessment,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3219,Read pre-processing,Sequence read pre-processing,"Pre-process sequence reads to ensure (or improve) quality and reliability.|For example process paired end reads to trim low quality ends remove short sequences, identify sequence inserts, detect chimeric reads, or remove low quality sequnces including vector, adaptor, low complexity and contaminant sequences. Sequences might come from genomic DNA library, EST libraries, SSH library and so on.",FALSE,,,http://edamontology.org/operation_3218|http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3219,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Pre-process sequence reads to ensure (or improve) quality and reliability.,Sequence read pre-processing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3221,Species frequency estimation,,"Estimate the frequencies of different species from analysis of the molecular sequences, typically of DNA recovered from environmental samples.",FALSE,,,http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3221,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Estimate the frequencies of different species from analysis of the molecular sequences, typically of DNA recovered from environmental samples.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3222,Peak calling,Protein binding peak detection|Peak-pair calling,"Identify putative protein-binding regions in a genome sequence from analysis of Chip-sequencing data or ChIP-on-chip data.|Chip-sequencing combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to generate a set of reads, which are aligned to a genome sequence.  The enriched areas contain the binding sites of DNA-associated proteins.  For example, a transcription factor binding site. ChIP-on-chip in contrast combines chromatin immunoprecipitation ('ChIP') with microarray ('chip').  ""Peak-pair calling"" is similar to ""Peak calling"" in the context of ChIP-exo.",FALSE,,,http://edamontology.org/operation_0415,,1.1,,,,,,,,,,,,operation_3222,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify putative protein-binding regions in a genome sequence from analysis of Chip-sequencing data or ChIP-on-chip data.,Protein binding peak detection,Peak-pair calling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3223,Differential gene expression analysis,Differentially expressed gene identification|Differential gene analysis,"Identify from molecular sequence analysis (typically from analysis of microarray or RNA-seq data) genes whose expression levels are significantly different between two sample groups.|Differential gene expression analysis is used, for example, to identify which genes are up-regulated (increased expression) or down-regulated (decreased expression) between a group treated with a drug and a control groups.",FALSE,,,http://edamontology.org/operation_2998,,1.1,,,,,,,,,,,,operation_3223,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify from molecular sequence analysis (typically from analysis of microarray or RNA-seq data) genes whose expression levels are significantly different between two sample groups.,Differentially expressed gene identification|Differential gene analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3224,Gene set testing,,"Analyse gene expression patterns (typically from DNA microarray datasets) to identify sets of genes that are associated with a specific trait, condition, clinical outcome etc.|Gene sets can be defined beforehand by biological function, chromosome locations and so on.",FALSE,,,http://edamontology.org/operation_2495,,1.1,,,,,,,,,,,,operation_3224,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse gene expression patterns (typically from DNA microarray datasets) to identify sets of genes that are associated with a specific trait, condition, clinical outcome etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3225,Variant classification,,"Classify variants based on their potential effect on genes, especially functional effects on the expressed proteins.|Variants are typically classified by their position (intronic, exonic, etc.) in a gene transcript and (for variants in coding exons) by their effect on the protein sequence (synonymous, non-synonymous, frameshifting, etc.)",FALSE,,,http://edamontology.org/operation_3197|http://edamontology.org/operation_2995,,1.1,,,,,,,,,,,,operation_3225,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Classify variants based on their potential effect on genes, especially functional effects on the expressed proteins.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3226,Variant prioritisation,,"Identify biologically interesting variants by prioritizing individual variants, for example, homozygous variants absent in control genomes.|Variant prioritisation can be used for example to produce a list of variants responsible for 'knocking out' genes in specific genomes. Methods amino acid substitution, aggregative approaches, probabilistic approach, inheritance and unified likelihood-frameworks.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3226,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify biologically interesting variants by prioritizing individual variants, for example, homozygous variants absent in control genomes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3227,Variant calling,Variant mapping|Genome variant detection|Somatic variant calling|Germ line variant calling|Allele calling|Exome variant detection,"Identify and map genomic alterations, including single nucleotide polymorphisms, short indels and structural variants, in a genome sequence.|Somatic variant calling is the detection of variations established in somatic cells and hence not inherited as a germ line variant.|Variant detection|Methods often utilise a database of aligned reads.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3227,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify and map genomic alterations, including single nucleotide polymorphisms, short indels and structural variants, in a genome sequence.",Variant mapping,Genome variant detection|Somatic variant calling|Germ line variant calling|Allele calling|Exome variant detection,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3228,Structural variation discovery,,"Detect large regions in a genome subject to copy-number variation, or other structural variations in genome(s).|Methods might involve analysis of whole-genome array comparative genome hybridisation or single-nucleotide polymorphism arrays, paired-end mapping of sequencing data, or from analysis of short reads from new sequencing technologies.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3228,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Detect large regions in a genome subject to copy-number variation, or other structural variations in genome(s).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3229,Exome assembly,Exome sequence analysis,Anaylse sequencing data from experiments aiming to selectively sequence the coding regions of the genome.,FALSE,,,http://edamontology.org/operation_0310,,1.1,,,,,,,,,,,,operation_3229,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Anaylse sequencing data from experiments aiming to selectively sequence the coding regions of the genome.,Exome sequence analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3230,Read depth analysis,,"Analyse mapping density (read depth) of (typically) short reads from sequencing platforms, for example, to detect deletions and duplications.",FALSE,,,http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3230,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse mapping density (read depth) of (typically) short reads from sequencing platforms, for example, to detect deletions and duplications.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3232,Gene expression QTL analysis,Gene expression quantitative trait loci profiling|Gene expression QTL profiling|eQTL profiling,"Combine classical quantitative trait loci (QTL) analysis with gene expression profiling, for example, to describe describe cis- and trans-controlling elements for the expression of phenotype associated genes.",FALSE,,,http://edamontology.org/operation_2495,,1.1,,,,,,,,,,,,operation_3232,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Combine classical quantitative trait loci (QTL) analysis with gene expression profiling, for example, to describe describe cis- and trans-controlling elements for the expression of phenotype associated genes.",Gene expression quantitative trait loci profiling|Gene expression QTL profiling|eQTL profiling,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3233,Copy number estimation,Transcript copy number estimation,"Estimate the number of copies of loci of particular gene(s) in DNA sequences typically from gene-expression profiling technology based on microarray hybridisation-based experiments. For example, estimate copy number (or marker dosage) of a dominant marker in samples from polyploid plant cells or tissues, or chromosomal gains and losses in tumors.|Methods typically implement some statistical model for hypothesis testing, and methods estimate total copy number, i.e. do not distinguish the two inherited chromosomes quantities (specific copy number).",FALSE,,,http://edamontology.org/operation_2478,,1.1,,,,,,,,,,,,operation_3233,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Estimate the number of copies of loci of particular gene(s) in DNA sequences typically from gene-expression profiling technology based on microarray hybridisation-based experiments. For example, estimate copy number (or marker dosage) of a dominant marker in samples from polyploid plant cells or tissues, or chromosomal gains and losses in tumors.",Transcript copy number estimation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3237,Primer removal,Adapter removal,Remove forward and/or reverse primers from nucleic acid sequences (typically PCR products).,FALSE,,,http://edamontology.org/operation_0369,,1.2,,,,,,,,,,,,operation_3237,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Adapter removal,,,Remove forward and/or reverse primers from nucleic acid sequences (typically PCR products).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3258,Transcriptome assembly,,Infer a transcriptome sequence by analysis of short sequence reads.,FALSE,,,http://edamontology.org/operation_0310,,1.2,,,,,,,,,,,,operation_3258,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Infer a transcriptome sequence by analysis of short sequence reads.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3259,Transcriptome assembly (de novo),de novo transcriptome assembly,"Infer a transcriptome sequence without the aid of a reference genome, i.e. by comparing short sequences (reads) to each other.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.2,,,,,,,,,,,,operation_3259,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0524,,,,,"Infer a transcriptome sequence without the aid of a reference genome, i.e. by comparing short sequences (reads) to each other.",de novo transcriptome assembly,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_3260,Transcriptome assembly (mapping),,Infer a transcriptome sequence by mapping short reads to a reference genome.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.2,,,,,,,,,,,,operation_3260,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/operation_0523,,,,,Infer a transcriptome sequence by mapping short reads to a reference genome.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.6,,,,,,,
http://edamontology.org/operation_3267,Sequence coordinate conversion,,"Convert one set of sequence coordinates to another, e.g. convert coordinates of one assembly to another, cDNA to genomic, CDS to genomic, protein translation to genomic etc.",FALSE,,,http://edamontology.org/operation_3434,,1.3,,,,,,,,,,,,operation_3267,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Convert one set of sequence coordinates to another, e.g. convert coordinates of one assembly to another, cDNA to genomic, CDS to genomic, protein translation to genomic etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3278,Document similarity calculation,,Calculate similarity between 2 or more documents.,FALSE,,,http://edamontology.org/operation_3437,,1.3,,,,,,,,,,,,operation_3278,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate similarity between 2 or more documents.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3279,Document clustering,,Cluster (group) documents on the basis of their calculated similarity.,FALSE,,,http://edamontology.org/operation_3432|http://edamontology.org/operation_3437,,1.3,,,,,,,,,,,,operation_3279,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cluster (group) documents on the basis of their calculated similarity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3280,Named-entity and concept recognition,Concept mining|Event extraction|Entity chunking|Named-entity recognition|Entity identification|Entity extraction,"Recognise named entities, ontology concepts, tags, events, and dictionary terms within documents.",FALSE,,,http://edamontology.org/operation_0306,,1.3,,,,,,,,,,,,operation_3280,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Recognise named entities, ontology concepts, tags, events, and dictionary terms within documents.",,Concept mining|Event extraction|Entity chunking|Named-entity recognition|Entity identification|Entity extraction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3282,ID mapping,Identifier mapping|Accession mapping,"Map data identifiers to one another for example to establish a link between two biological databases for the purposes of data integration.|The mapping can be achieved by comparing identifier values or some other means, e.g. exact matches to a provided sequence.",FALSE,,,http://edamontology.org/operation_2429|http://edamontology.org/operation_2424,,1.3,,,,,,,,,,,,operation_3282,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Map data identifiers to one another for example to establish a link between two biological databases for the purposes of data integration.,Identifier mapping|Accession mapping,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3283,Anonymisation,Data anonymisation,Process data in such a way that makes it hard to trace to the person which the data concerns.,FALSE,,,http://edamontology.org/operation_0004,,1.3,,,,,,,,,,,,operation_3283,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Process data in such a way that makes it hard to trace to the person which the data concerns.,Data anonymisation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3289,ID retrieval,,"Search for and retrieve a data identifier of some kind, e.g. a database entry accession.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.3,,"(jison)Too fine-grained, the operation (Data retrieval) hasn't changed, just what is retrieved.",,,,,,,,,,operation_3289,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Search for and retrieve a data identifier of some kind, e.g. a database entry accession.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2422,,,,,,,,,,,,,1.17,http://edamontology.org/operation_0304,,,,,,
http://edamontology.org/operation_3348,Sequence checksum generation,,Generate a checksum of a molecular sequence.,FALSE,,,http://edamontology.org/operation_3429,,1.4,,,,,,,,,,,,operation_3348,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Generate a checksum of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3349,Bibliography generation,Bibliography construction,Construct a bibliography from the scientific literature.,FALSE,,,http://edamontology.org/operation_3429,,1.4,,,,,,,,,,,,operation_3349,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct a bibliography from the scientific literature.,Bibliography construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3350,Protein quaternary structure prediction,,Predict the structure of a multi-subunit protein and particularly how the subunits fit together.,FALSE,,,http://edamontology.org/operation_0474,,1.4,,,,,,,,,,,,operation_3350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the structure of a multi-subunit protein and particularly how the subunits fit together.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3351,Molecular surface analysis,,"Analyse the surface properties of proteins or other macromolecules, including surface accessible pockets, interior inaccessible cavities etc.",FALSE,,,http://edamontology.org/operation_2480,,1.4,,,,,,,,,,,,operation_3351,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse the surface properties of proteins or other macromolecules, including surface accessible pockets, interior inaccessible cavities etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3352,Ontology comparison,,"Compare two or more ontologies, e.g. identify differences.",FALSE,,,http://edamontology.org/operation_2424,,1.4,,,,,,,,,,,,operation_3352,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare two or more ontologies, e.g. identify differences.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3353,Ontology comparison,,"Compare two or more ontologies, e.g. identify differences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.4,,,,,,,,,,,,operation_3353,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare two or more ontologies, e.g. identify differences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3352,,,,,,,,,,,,,1.9,,,,,,,
http://edamontology.org/operation_3357,Format detection,Format recognition|Format identification|Format inference,"Recognition of which format the given data is in.|'Format recognition' is not a bioinformatics-specific operation, but of great relevance in bioinformatics. Should be removed from EDAM if/when captured satisfactorily in a suitable domain-generic ontology.",FALSE,,,http://edamontology.org/operation_2409,,1.4,,,,,,,,,,,,operation_3357,http://edamontology.org/comment_handle,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Recognition of which format the given data is in.,Format recognition|Format identification|Format inference,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3359,Splitting,File splitting,"Split a file containing multiple data items into many files, each containing one item",FALSE,,,http://edamontology.org/operation_2409,,1.4,,,,,,,,,,,,operation_3359,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Split a file containing multiple data items into many files, each containing one item",File splitting,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3429,Generation,Construction,"Construct some data entity.|For non-analytical operations, see the 'Processing' branch.",FALSE,,,http://edamontology.org/operation_0004,,beta12orEarlier,,,,,,,,,,,,operation_3429,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct some data entity.,Construction,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3430,Nucleic acid sequence feature detection,,"Predict, recognise and identify functional or other key sites within nucleic acid sequences, typically by scanning for known motifs, patterns and regular expressions.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.6,,(jison)This is a distinction made on basis of input; all features exist can be mapped to a sequence so this isn't needed.,,,,,,,,,,operation_3430,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict, recognise and identify functional or other key sites within nucleic acid sequences, typically by scanning for known motifs, patterns and regular expressions.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0415,,,,,,,,,,,,,1.17,http://edamontology.org/operation_0415|http://edamontology.org/operation_0253,,,,,,
http://edamontology.org/operation_3431,Deposition,Data deposition|Data submission|Database submission|Database deposition|Submission,"Deposit some data in a database or some other type of repository or software system.|For non-analytical operations, see the 'Processing' branch.",FALSE,,,http://edamontology.org/operation_0004,,1.6,,,,,,,,,,,,operation_3431,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Deposit some data in a database or some other type of repository or software system.,Data deposition|Data submission|Database submission|Database deposition|Submission,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3432,Clustering,,Group together some data entities on the basis of similarities such that entities in the same group (cluster) are more similar to each other than to those in other groups (clusters).,FALSE,,,http://edamontology.org/operation_0004,,1.6,,,,,,,,,,,,operation_3432,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Group together some data entities on the basis of similarities such that entities in the same group (cluster) are more similar to each other than to those in other groups (clusters).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3433,Assembly,,Construct some entity (typically a molecule sequence) from component pieces.,FALSE,,,http://edamontology.org/operation_0004,,1.6,,,,,,,,,,,,operation_3433,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Construct some entity (typically a molecule sequence) from component pieces.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3434,Conversion,,Convert a data set from one form to another.,FALSE,,,http://edamontology.org/operation_0004,,1.6,,,,,,,,,,,,operation_3434,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Convert a data set from one form to another.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3435,Standardisation and normalisation,Normalisation|Standardisation,"Standardize or normalize data by some statistical method.| In the simplest normalisation means adjusting values measured on different scales to a common scale (often between 0.0 and 1.0), but can refer to more sophisticated adjustment whereby entire probability distributions of adjusted values are brought into alignment. Standardisation typically refers to an operation whereby a range of values are standardised to measure how many standard deviations a value is from its mean. ",FALSE,,,http://edamontology.org/operation_2238,,1.6,,,,,,,,,,,,operation_3435,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Standardize or normalize data by some statistical method.,,Normalisation|Standardisation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3436,Aggregation,,Combine multiple files or data items into a single file or object.,FALSE,,,http://edamontology.org/operation_2409,,1.6,,,,,,,,,,,,operation_3436,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Combine multiple files or data items into a single file or object.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3437,Article comparison,,Compare two or more scientific articles.,FALSE,,,http://edamontology.org/operation_2424,,1.6,,,,,,,,,,,,operation_3437,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more scientific articles.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3438,Calculation,,"Mathematical determination of the value of something, typically a properly of a  molecule.",FALSE,,,http://edamontology.org/operation_0004,,1.6,,,,,,,,,,,,operation_3438,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mathematical determination of the value of something, typically a properly of a  molecule.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3439,Pathway or network prediction,,Predict a molecular pathway or network.,FALSE,,,http://edamontology.org/operation_2497|http://edamontology.org/operation_2423,,1.6,,,,,,,,,,,,operation_3439,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict a molecular pathway or network.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3440,Genome assembly,,The process of assembling many short DNA sequences together such thay they represent the original chromosomes from which the DNA originated.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.6,,,,,,,,,,,,operation_3440,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The process of assembling many short DNA sequences together such thay they represent the original chromosomes from which the DNA originated.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0525,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3441,Plotting,,"Generate a graph, or other visual representation, of data, showing the relationship between two or more variables.",FALSE,,,http://edamontology.org/operation_0337,,1.6,,,,,,,,,,,,operation_3441,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate a graph, or other visual representation, of data, showing the relationship between two or more variables.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3443,Image analysis,Image processing,The analysis of a image (typically a digital image) of some type in order to extract information from it.,FALSE,,,http://edamontology.org/operation_2945,,1.7,,,,,,,,,,,,operation_3443,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Image processing,,,The analysis of a image (typically a digital image) of some type in order to extract information from it.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3445,Diffraction data analysis,,Analysis of data from a diffraction experiment.,FALSE,,,http://edamontology.org/operation_2480,,1.7,,,,,,,,,,,,operation_3445,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analysis of data from a diffraction experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3446,Cell migration analysis,,"Analysis of cell migration images in order to study cell migration, typically in order to study the processes that play a role in the disease progression.",FALSE,,,http://edamontology.org/operation_3443,,1.7,,,,,,,,,,,,operation_3446,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analysis of cell migration images in order to study cell migration, typically in order to study the processes that play a role in the disease progression.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3447,Diffraction data reduction,,"Processing of diffraction data into a corrected, ordered, and simplified form.",FALSE,,,http://edamontology.org/operation_3445,,1.7,,,,,,,,,,,,operation_3447,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Processing of diffraction data into a corrected, ordered, and simplified form.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3450,Neurite measurement,,"Measurement of neurites; projections (axons or dendrites) from the cell body of a neuron, from analysis of neuron images.",FALSE,,,http://edamontology.org/operation_3443,,1.7,,,,,,,,,,,,operation_3450,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Measurement of neurites; projections (axons or dendrites) from the cell body of a neuron, from analysis of neuron images.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3453,Diffraction data integration,Diffraction summation integration|Diffraction profile fitting,The evaluation of diffraction intensities and integration of diffraction maxima from a diffraction experiment.,FALSE,,,http://edamontology.org/operation_3445,,1.7,,,,,,,,,,,,operation_3453,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The evaluation of diffraction intensities and integration of diffraction maxima from a diffraction experiment.,,Diffraction summation integration|Diffraction profile fitting,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3454,Phasing,,"Phase a macromolecular crystal structure, for example by using molecular replacement or experimental phasing methods.",FALSE,,,http://edamontology.org/operation_3445,,1.7,,,,,,,,,,,,operation_3454,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Phase a macromolecular crystal structure, for example by using molecular replacement or experimental phasing methods.",,,,,http://purl.obolibrary.org/obo/edam#operations|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3455,Molecular replacement,,"A technique used to construct an atomic model of an unknown structure from diffraction data, based upon an atomic model of a known structure, either a related protein or the same protein from a different crystal form.|The technique solves the phase problem, i.e. retrieve information concern phases of the structure.",FALSE,,,http://edamontology.org/operation_0322,,1.7,,,,,,,,,,,,operation_3455,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A technique used to construct an atomic model of an unknown structure from diffraction data, based upon an atomic model of a known structure, either a related protein or the same protein from a different crystal form.",,,,,http://purl.obolibrary.org/obo/edam#operations|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3456,Rigid body refinement,,"A method used to refine a structure by moving the whole molecule or parts of it as a rigid unit, rather than moving individual atoms.|Rigid body refinement usually follows molecular replacement in the assignment of a structure from diffraction data.",FALSE,,,http://edamontology.org/operation_0322,,1.7,,,,,,,,,,,,operation_3456,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A method used to refine a structure by moving the whole molecule or parts of it as a rigid unit, rather than moving individual atoms.",,,,,http://purl.obolibrary.org/obo/edam#operations|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3457,Single particle analysis,,"An image processing technique that combines and analyze multiple images of a particulate sample, in order to produce an image with clearer features that are more easily interpreted.|Single particle analysis is used to improve the information that can be obtained by relatively low resolution techniques, , e.g. an image of a protein or virus from transmission electron microscopy (TEM).",FALSE,,,http://edamontology.org/operation_2480|http://edamontology.org/operation_3443,,1.7,,,,,,,,,,,,operation_3457,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An image processing technique that combines and analyze multiple images of a particulate sample, in order to produce an image with clearer features that are more easily interpreted.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3458,Single particle alignment and classification,,Compare (align and classify) multiple particle images from a micrograph in order to produce a representative image of the particle. |A micrograph can include particles in multiple different orientations and/or conformations.  Particles are compared and organised into sets based on their similarity.  Typically iterations of classification and alignment and are performed to optimise the final image; average images produced by classification are used as a reference image for subsequent alignment of the whole image set.,FALSE,,,http://edamontology.org/operation_2990|http://edamontology.org/operation_3457,,1.7,,,,,,,,,,,,operation_3458,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare (align and classify) multiple particle images from a micrograph in order to produce a representative image of the particle. ,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3459,Functional clustering,Functional sequence clustering,"Clustering of molecular sequences on the basis of their function, typically using information from an ontology of gene function, or some other measure of functional phenotype.",FALSE,,,http://edamontology.org/operation_0291,,1.7,,,,,,,,,,,,operation_3459,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Clustering of molecular sequences on the basis of their function, typically using information from an ontology of gene function, or some other measure of functional phenotype.",Functional sequence clustering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3460,Taxonomic classification,Taxonomy assignment|Taxonomic profiling,Classifiication (typically of molecular sequences) by assignment to some taxonomic hierarchy.,FALSE,,,http://edamontology.org/operation_2995,,1.7,,,,,,,,,,,,operation_3460,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Classifiication (typically of molecular sequences) by assignment to some taxonomic hierarchy.,Taxonomy assignment,Taxonomic profiling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3461,Virulence prediction,Pathogenicity prediction,The prediction of the degree of pathogenicity of a microorganism from analysis of molecular sequences.,FALSE,,,http://edamontology.org/operation_2423|http://edamontology.org/operation_2403,,1.7,,,,,,,,,,,,operation_3461,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The prediction of the degree of pathogenicity of a microorganism from analysis of molecular sequences.,Pathogenicity prediction,,,,http://purl.obolibrary.org/obo/edam#operations|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3463,Gene expression correlation analysis,Gene co-expression network analysis,"Analyse the correlation patterns among genes across across a variety of experiments, microarray samples etc.
 ",FALSE,,,http://edamontology.org/operation_3465|http://edamontology.org/operation_0315,,1.7,,,,,,,,,,,,operation_3463,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analyse the correlation patterns among genes across across a variety of experiments, microarray samples etc.
 ",Gene co-expression network analysis,,,,http://purl.obolibrary.org/obo/edam#operations|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3465,Correlation,,"Identify a correlation, i.e. a statistical relationship between two random variables or two sets of data.",FALSE,,,http://edamontology.org/operation_0004,,1.7,,,,,,,,,,,,operation_3465,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify a correlation, i.e. a statistical relationship between two random variables or two sets of data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3469,RNA structure covariance model generation,,Compute the covariance model for (a family of) RNA secondary structures.,FALSE,,,http://edamontology.org/operation_2439|http://edamontology.org/operation_3429,,1.7,,,,,,,,,,,,operation_3469,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compute the covariance model for (a family of) RNA secondary structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3470,RNA secondary structure prediction (shape-based),,"Predict RNA secondary structure by analysis, e.g. probabilistic analysis, of the shape of RNA folds.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.7,,,,,,,,,,,,operation_3470,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Predict RNA secondary structure by analysis, e.g. probabilistic analysis, of the shape of RNA folds.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0278,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0278,,,,,,
http://edamontology.org/operation_3471,Nucleic acid folding prediction (alignment-based),,Prediction of nucleic-acid folding using sequence alignments as a source of data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.7,,,,,,,,,,,,operation_3471,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Prediction of nucleic-acid folding using sequence alignments as a source of data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_0279,,,,,,,,,,,,,1.18,http://edamontology.org/operation_0279,,,,,,
http://edamontology.org/operation_3472,k-mer counting,,"Count k-mers (substrings of length k) in DNA sequence data.|k-mer counting is used in genome and transcriptome assembly, metagenomic sequencing, and for error correction of sequence reads. ",FALSE,,,http://edamontology.org/operation_0236,,1.7,,,,,,,,,,,,operation_3472,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Count k-mers (substrings of length k) in DNA sequence data.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3478,Phylogenetic tree reconstruction,,Reconstructing the inner node labels of a phylogenetic tree from its leafes.|Note that this is somewhat different from simply analysing an existing tree or constructing a completely new one.,FALSE,,,http://edamontology.org/operation_0323,,1.7,,,,,,,,,,,,operation_3478,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Reconstructing the inner node labels of a phylogenetic tree from its leafes.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3480,Probabilistic data generation,,"Generate some data from a choosen probibalistic model, possibly to evaluate algorithms.",FALSE,,,http://edamontology.org/operation_3429,,1.7,,,,,,,,,,,,operation_3480,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate some data from a choosen probibalistic model, possibly to evaluate algorithms.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3481,Probabilistic sequence generation,,"Generate sequences from some probabilistic model, e.g. a model that simulates evolution.",FALSE,,,http://edamontology.org/operation_0230|http://edamontology.org/operation_3480,,1.7,,,,,,,,,,,,operation_3481,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Generate sequences from some probabilistic model, e.g. a model that simulates evolution.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3482,Antimicrobial resistance prediction,,Identify or predict causes for antibiotic resistance from molecular sequence analysis.,FALSE,,,http://edamontology.org/operation_2423|http://edamontology.org/operation_2403,,1.7,,,,,,,,,,,,operation_3482,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify or predict causes for antibiotic resistance from molecular sequence analysis.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#data,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3501,Over-representation analysis,Enrichment|Enrichment analysis|Functional enrichment,"Analysis of a set of objects, such as genes, annotated with given categories, where eventual over-/under-representation of certain categories within the studied set of objects is revealed.|Categories from a relevant ontology can be used. The input is typically a set of genes or other biological objects, possibly represented by their identifiers, and the output of the analysis is typically a ranked list of categories, each associated with a statistical metric of over-/under-representation within the studied data.",FALSE,,,http://edamontology.org/operation_2945,,1.8,,,,,,,,,,,,operation_3501,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Analysis of a set of objects, such as genes, annotated with given categories, where eventual over-/under-representation of certain categories within the studied set of objects is revealed.",Enrichment|Enrichment analysis,Functional enrichment,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3502,Chemical class enrichment,,Analyse a dataset with respect to concepts from an ontology of chemical structure.,FALSE,,,http://edamontology.org/operation_3501,,1.8,,,,,,,,,,,,operation_3502,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse a dataset with respect to concepts from an ontology of chemical structure.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3503,Incident curve plotting,,"Plot an incident curve such as a survival curve, death curve, mortality curve.",FALSE,,,http://edamontology.org/operation_3441,,1.8,,,,,,,,,,,,operation_3503,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Plot an incident curve such as a survival curve, death curve, mortality curve.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3504,Variant pattern analysis,,Identify and map patterns of genomic variations.|Methods often utilise a database of aligned reads.,FALSE,,,http://edamontology.org/operation_3197,,1.8,,,,,,,,,,,,operation_3504,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify and map patterns of genomic variations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3545,Mathematical modelling,,"Model some biological system using mathematical techniques including  dynamical systems, statistical models, differential equations, and game theoretic models.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,operation_3545,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Model some biological system using mathematical techniques including  dynamical systems, statistical models, differential equations, and game theoretic models.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_2426,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/operation_3552,Microscope image visualisation,,Visualise images resulting from various types of microscopy.,FALSE,,,http://edamontology.org/operation_0337,,1.9,,,,,,,,,,,,operation_3552,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Visualise images resulting from various types of microscopy.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3553,Image annotation,,"Annotate an image of some sort, typically with terms from a controlled vocabulary.",FALSE,,,http://edamontology.org/operation_0226,,1.9,,,,,,,,,,,,operation_3553,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotate an image of some sort, typically with terms from a controlled vocabulary.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3557,Imputation,Data imputation,"Replace missing data with substituted values, usually by using some statistical or other mathematical approach.",FALSE,,,http://edamontology.org/operation_2238,,1.9,,,,,,,,,,,,operation_3557,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Replace missing data with substituted values, usually by using some statistical or other mathematical approach.",Data imputation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3559,Ontology visualisation,Ontology browsing,"Visualise, format or render data from an ontology, typically a tree of terms.",FALSE,,,http://edamontology.org/operation_0337,,1.9,,,,,,,,,,,,operation_3559,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render data from an ontology, typically a tree of terms.",Ontology browsing,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3560,Maximum occurence analysis,,A method for making numerical assessments about the maximum percent of time that a conformer of a flexible macromolecule can exist and still be compatible with the experimental data. ,FALSE,,,http://edamontology.org/operation_0321,,beta12orEarlier,,,,,,,,,,,,operation_3560,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A method for making numerical assessments about the maximum percent of time that a conformer of a flexible macromolecule can exist and still be compatible with the experimental data. ,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3561,Database comparison,Data model comparison|Schema comparison,"Compare the models or schemas used by two or more databases, or any other general comparison of databases rather than a detailed comparison of the entries themselves.",FALSE,,,http://edamontology.org/operation_2429|http://edamontology.org/operation_2424,,1.9,,,,,,,,,,,,operation_3561,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Compare the models or schemas used by two or more databases, or any other general comparison of databases rather than a detailed comparison of the entries themselves.",,Data model comparison|Schema comparison,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3562,Network simulation,Pathway simulation|Network topology simulation,Simulate the bevaviour of a biological pathway or network.,FALSE,,,http://edamontology.org/operation_2426,,1.9,,,,,,,,,,,,operation_3562,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Simulate the bevaviour of a biological pathway or network.,Pathway simulation|Network topology simulation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3563,RNA-seq read count analysis,,Analyze read counts from RNA-seq experiments.,FALSE,,,http://edamontology.org/operation_3680,,1.9,,,,,,,,,,,,operation_3563,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyze read counts from RNA-seq experiments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3564,Chemical redundancy removal,,Identify and remove redudancy from a set of small molecule structures.,FALSE,,,http://edamontology.org/operation_2483,,1.9,,,,,,,,,,,,operation_3564,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identify and remove redudancy from a set of small molecule structures.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3565,RNA-seq time series data analysis,,Analyze time series data from an RNA-seq experiment.,FALSE,,,http://edamontology.org/operation_3680,,1.9,,,,,,,,,,,,operation_3565,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyze time series data from an RNA-seq experiment.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3566,Simulated gene expression data generation,,"Simulate gene expression data, e.g. for purposes of benchmarking.",FALSE,,,http://edamontology.org/operation_2426,,1.9,,,,,,,,,,,,operation_3566,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Simulate gene expression data, e.g. for purposes of benchmarking.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3625,Relation inference,Relationship inference,"Identify semantic relations among entities and concepts within a text, using text mining techniques.",FALSE,,,http://edamontology.org/operation_0306,,1.12,,,,,,,,,,,,operation_3625,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identify semantic relations among entities and concepts within a text, using text mining techniques.",Relationship inference,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3627,Mass spectra calibration,,Re-adjust the output of mass spectrometry experiments with shifted ppm values.,FALSE,,,http://edamontology.org/operation_3214,,1.12,,,,,,,,,,,,operation_3627,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Re-adjust the output of mass spectrometry experiments with shifted ppm values.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3628,Chromatographic alignment,,"Align multiple data sets using information from chromatography and/or peptide identification, from mass spectrometry experiments.",FALSE,,,http://edamontology.org/operation_3214,,1.12,,,,,,,,,,,,operation_3628,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Align multiple data sets using information from chromatography and/or peptide identification, from mass spectrometry experiments.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3629,Deisotoping,Deconvolution,"The removal of isotope peaks in a spectrum, to represent the fragment ion as one data point.|Deisotoping is commonly done to reduce complexity, and done in conjunction with the charge state deconvolution.",FALSE,,,http://edamontology.org/operation_3214,,1.12,,,,,,,,,,,,operation_3629,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The removal of isotope peaks in a spectrum, to represent the fragment ion as one data point.",Deconvolution,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3630,Protein quantification,Protein quantitation,Technique for determining the amount of proteins in a sample.,FALSE,,,http://edamontology.org/operation_3799|http://edamontology.org/operation_3214,,1.12,,,,,,,,,,,,operation_3630,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Technique for determining the amount of proteins in a sample.,Protein quantitation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3631,Peptide identification,Peptide-spectrum-matching,Determination of peptide sequence from mass spectrum.,FALSE,,,http://edamontology.org/operation_3214,,1.12,,,,,,,,,,,,operation_3631,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Determination of peptide sequence from mass spectrum.,Peptide-spectrum-matching,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3632,Isotopic distributions calculation,,Calculate the isotope distribution of a given chemical species.,FALSE,,,http://edamontology.org/operation_3438,,1.12,,,,,,,,,,,,operation_3632,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate the isotope distribution of a given chemical species.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3633,Retention time prediction,Retention time calculation,Prediction of retention time in a mass spectrometry experiment based on compositional and structural properties of the separated species.,FALSE,,,http://edamontology.org/operation_3438,,1.12,,,,,,,,,,,,operation_3633,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Prediction of retention time in a mass spectrometry experiment based on compositional and structural properties of the separated species.,Retention time calculation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3634,Label-free quantification,,Quantification without the use of chemical tags.,FALSE,,,http://edamontology.org/operation_3630,,1.12,,,,,,,,,,,,operation_3634,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification without the use of chemical tags.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3635,Labeled quantification,,Quantification based on the use of chemical tags.,FALSE,,,http://edamontology.org/operation_3630,,1.12,,,,,,,,,,,,operation_3635,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification based on the use of chemical tags.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3636,MRM/SRM,,Quantification by Selected/multiple Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).,FALSE,,,http://edamontology.org/operation_3630,,1.12,,,,,,,,,,,,operation_3636,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification by Selected/multiple Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3637,Spectral counting,,Calculate number of identified MS2 spectra as approximation of peptide / protein quantity.,FALSE,,,http://edamontology.org/operation_3634,,1.12,,,,,,,,,,,,operation_3637,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Calculate number of identified MS2 spectra as approximation of peptide / protein quantity.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3638,SILAC,,Quantification analysis using stable isotope labeling by amino acids in cell culture.,FALSE,,,http://edamontology.org/operation_3635,,1.12,,,,,,,,,,,,operation_3638,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification analysis using stable isotope labeling by amino acids in cell culture.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3639,iTRAQ,,"Quantification analysis using the AB SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z.",FALSE,,,http://edamontology.org/operation_3635,,1.12,,,,,,,,,,,,operation_3639,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Quantification analysis using the AB SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3640,18O labeling,,Quantification analysis using labeling based on 18O-enriched H2O.,FALSE,,,http://edamontology.org/operation_3635,,1.12,,,,,,,,,,,,operation_3640,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification analysis using labeling based on 18O-enriched H2O.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3641,TMT-tag,,Quantification analysis using the Thermo Fisher tandem mass tag labelling workflow.,FALSE,,,http://edamontology.org/operation_3635,,1.12,,,,,,,,,,,,operation_3641,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification analysis using the Thermo Fisher tandem mass tag labelling workflow.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3642,Dimethyl,,Quantification analysis using chemical labeling by stable isotope dimethylation,FALSE,,,http://edamontology.org/operation_3635,,1.12,,,,,,,,,,,,operation_3642,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Quantification analysis using chemical labeling by stable isotope dimethylation,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3643,Tag-based peptide identification,,Peptide sequence tags are used as piece of information about a peptide obtained by tandem mass spectrometry.,FALSE,,,http://edamontology.org/operation_3631,,1.12,,,,,,,,,,,,operation_3643,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Peptide sequence tags are used as piece of information about a peptide obtained by tandem mass spectrometry.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3644,de Novo sequencing,,Analytical process that derives a peptide’s amino acid sequence from its tandem mass spectrum (MS/MS) without the assistance of a sequence database.,FALSE,,,http://edamontology.org/operation_3631|http://edamontology.org/operation_2514,,1.12,,,,,,,,,,,,operation_3644,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analytical process that derives a peptide’s amino acid sequence from its tandem mass spectrum (MS/MS) without the assistance of a sequence database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3645,PTM identification,,Identification of post-translational modifications (PTMs) of peptides/proteins in mass spectrum.,FALSE,,,http://edamontology.org/operation_3631,,1.12,,,,,,,,,,,,operation_3645,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Identification of post-translational modifications (PTMs) of peptides/proteins in mass spectrum.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3646,Peptide database search,,Determination of best matches between MS/MS spectrum and a database of protein or nucleic acid sequences.,FALSE,,,http://edamontology.org/operation_2421|http://edamontology.org/operation_3631,,1.12,,,,,,,,,,,,operation_3646,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Determination of best matches between MS/MS spectrum and a database of protein or nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3647,Blind peptide database search,Unrestricted peptide database search|Modification-tolerant peptide database search,Peptide database search for identification of known and unknown PTMs looking for mass difference mismatches.,FALSE,,,http://edamontology.org/operation_3646,,1.12,,,,,,,,,,,,operation_3647,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Peptide database search for identification of known and unknown PTMs looking for mass difference mismatches.,Unrestricted peptide database search|Modification-tolerant peptide database search,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3648,Validation of peptide-spectrum matches,,"Statistical estimation of false discovery rate from score distribution for peptide-spectrum-matches, following a peptide database search.",FALSE,,,http://edamontology.org/operation_2428|http://edamontology.org/operation_3646,,1.12,,,,,,,,,,,,operation_3648,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Statistical estimation of false discovery rate from score distribution for peptide-spectrum-matches, following a peptide database search.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3649,Target-Decoy,,Estimation of false discovery rate by comparison to search results with a database containing incorrect information.,FALSE,,,http://edamontology.org/operation_3648,,1.12,,,,,,,,,,,,operation_3649,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Estimation of false discovery rate by comparison to search results with a database containing incorrect information.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3658,Statistical inference,Empirical Bayes,Analyse data in order to deduce properties of an underlying distribution or population.,FALSE,,,http://edamontology.org/operation_2238,,1.12,,,,,,,,,,,,operation_3658,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyse data in order to deduce properties of an underlying distribution or population.,,Empirical Bayes,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3659,Regression analysis,Regression,A statistical calculation to estimate the relationships among variables. ,FALSE,,,http://edamontology.org/operation_2238,,1.12,,,,,,,,,,,,operation_3659,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A statistical calculation to estimate the relationships among variables. ,,Regression,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3660,Metabolic network modelling,Metabolic reconstruction|Metabolic network reconstruction|Metabolic network simulation,"Model a metabolic network, for example, to reconstruct pathways or to simulate metabolism.",FALSE,,,http://edamontology.org/operation_3562,,1.12,,,,,,,,,,,,operation_3660,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Model a metabolic network, for example, to reconstruct pathways or to simulate metabolism.",,Metabolic reconstruction|Metabolic network reconstruction|Metabolic network simulation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3661,SNP annotation,,Predict the effect or function of an individual single nucleotide polymorphism (SNP).,FALSE,,,http://edamontology.org/operation_0361,,1.12,,,,,,,,,,,,operation_3661,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Predict the effect or function of an individual single nucleotide polymorphism (SNP).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3662,Ab-initio gene prediction,Gene prediction (ab-initio),"Prediction of genes or gene components from first principles, i.e. without reference to existing genes.",FALSE,,,http://edamontology.org/operation_2454,,1.12,,,,,,,,,,,,operation_3662,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Prediction of genes or gene components from first principles, i.e. without reference to existing genes.",Gene prediction (ab-initio),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3663,Homology-based gene prediction,Gene prediction (homology-based),Prediction of genes or gene components by reference to homologous genes.,FALSE,,,http://edamontology.org/operation_2454,,1.12,,,,,,,,,,,,operation_3663,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Prediction of genes or gene components by reference to homologous genes.,Gene prediction (homology-based),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3664,Statistical modelling,,"Construction of a statistical model, or a set of assumptions around some observed data, usually by describing a set of probability distributions which approximate the distribution of data.",FALSE,,,http://edamontology.org/operation_2238,,1.12,,,,,,,,,,,,operation_3664,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Construction of a statistical model, or a set of assumptions around some observed data, usually by describing a set of probability distributions which approximate the distribution of data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3666,Molecular surface comparison,,Compare two or more molecular surfaces.,FALSE,,,http://edamontology.org/operation_3351|http://edamontology.org/operation_2483,,1.12,,,,,,,,,,,,operation_3666,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Compare two or more molecular surfaces.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3672,Gene functional annotation,Sequence functional annotation,"Annotate one or more sequences with functional information, such as cellular processes or metaobolic pathways, by reference to a controlled vocabulary - invariably the Gene Ontology (GO).",FALSE,,,http://edamontology.org/operation_0361,,1.12,,,,,,,,,,,,operation_3672,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annotate one or more sequences with functional information, such as cellular processes or metaobolic pathways, by reference to a controlled vocabulary - invariably the Gene Ontology (GO).",Sequence functional annotation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3675,Variant filtering,,"Variant filtering is used to eliminate false positive variants based for example on base calling quality, strand and position information, and mapping info.",FALSE,,,http://edamontology.org/operation_3218|http://edamontology.org/operation_2478,,1.12,,,,,,,,,,,,operation_3675,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Variant filtering is used to eliminate false positive variants based for example on base calling quality, strand and position information, and mapping info.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3677,Differential binding analysis,,Differential binding analysis identifies binding sites in nucleic acid sequences that are statistically significantly differentially bound between sample groups.,FALSE,,,http://edamontology.org/operation_2478,,1.12,,,,,,,,,,,,operation_3677,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Differential binding analysis identifies binding sites in nucleic acid sequences that are statistically significantly differentially bound between sample groups.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3680,RNA-Seq analysis,,Analyze data from RNA-seq experiments.,FALSE,,,http://edamontology.org/operation_2478,,1.13,,,,,,,,,,,,operation_3680,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Analyze data from RNA-seq experiments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3694,Mass spectrum visualisation,,"Visualise, format or render a mass spectrum.",FALSE,,,http://edamontology.org/operation_0337,,1.1,,,,,,,,,,,,operation_3694,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render a mass spectrum.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3695,Filtering,rRNA filtering|Sequence filtering,Filter a set of files or data items according to some property.,FALSE,,,http://edamontology.org/operation_2409,,1.13,,,,,,,,,,,,operation_3695,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Filter a set of files or data items according to some property.,,rRNA filtering|Sequence filtering,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3703,Reference identification,,"Identification of the best reference for mapping for a specific dataset from a list of potential references, when performing genetic variation analysis.",FALSE,,,http://edamontology.org/operation_3197,,1.1,,,,,,,,,,,,operation_3703,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identification of the best reference for mapping for a specific dataset from a list of potential references, when performing genetic variation analysis.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3704,Ion counting,Ion current integration,Label-free quantification by integration of ion current (ion counting).,FALSE,,,http://edamontology.org/operation_3634,,1.14,,,,,,,,,,,,operation_3704,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Label-free quantification by integration of ion current (ion counting).,Ion current integration,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3705,Isotope-coded protein label,ICPL,Chemical tagging free amino groups of intact proteins with stable isotopes.,FALSE,,,http://edamontology.org/operation_3635,,1.14,,,,,,,,,,,,operation_3705,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Chemical tagging free amino groups of intact proteins with stable isotopes.,ICPL,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3715,Metabolic labeling,N-15 metabolic labeling|C-13 metabolic labeling,Labeling all proteins and (possibly) all amino acids using C-13 or N-15 enriched grown medium or feed.|This includes N-15 metabolic labeling (labeling all proteins and (possibly) all amino acids using N-15 enriched grown medium or feed) and C-13 metabolic labeling (labeling all proteins and (possibly) all amino acids using C-13 enriched grown medium or feed).,FALSE,,,http://edamontology.org/operation_3635,,1.14,,,,,,,,,,,,operation_3715,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Labeling all proteins and (possibly) all amino acids using C-13 or N-15 enriched grown medium or feed.,,N-15 metabolic labeling|C-13 metabolic labeling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3730,Cross-assembly,Sequence assembly (cross-assembly),"Construction of a single sequence assembly of all reads from different samples, typically as part of a comparative metagenomic analysis.",FALSE,,,http://edamontology.org/operation_0310,,1.15,,,,,,,,,,,,operation_3730,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Construction of a single sequence assembly of all reads from different samples, typically as part of a comparative metagenomic analysis.",Sequence assembly (cross-assembly),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3731,Sample comparison,,"The comparison of samples from a metagenomics study, for example, by comparison of metagenome shotgun reads or assembled contig sequences, by comparison of functional profiles, or some other method.",FALSE,,,http://edamontology.org/operation_2424,,1.15,,,,,,,,,,,,operation_3731,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The comparison of samples from a metagenomics study, for example, by comparison of metagenome shotgun reads or assembled contig sequences, by comparison of functional profiles, or some other method.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3741,Differential protein expression analysis,Differential protein analysis,"The analysis, using proteomics techniques, to identify proteins whose encoding genes are differentially expressed under a given experimental setup.",FALSE,,,http://edamontology.org/operation_2997|http://edamontology.org/operation_3223,,1.15,,,,,,,,,,,,operation_3741,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Differential protein analysis,,,"The analysis, using proteomics techniques, to identify proteins whose encoding genes are differentially expressed under a given experimental setup.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3742,Differential gene expression analysis,,"The analysis, using any of diverse techniques, to identify genes that are differentially expressed under a given experimental setup.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.15,,,,,,,,,,,,operation_3742,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The analysis, using any of diverse techniques, to identify genes that are differentially expressed under a given experimental setup.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/operation_3223,,,,,,,,,,,,,1.17,http://edamontology.org/operation_2424,,,,,,
http://edamontology.org/operation_3744,Multiple sample visualisation,,"Visualise, format or render data arising from an analysis of multiple samples from a metagenomics/community experiment.",FALSE,,,http://edamontology.org/operation_0337,,1.15,,,,,,,,,,,,operation_3744,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Visualise, format or render data arising from an analysis of multiple samples from a metagenomics/community experiment.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3745,Ancestral reconstruction,Character mapping|Character optimisation,"The extrapolation of empirical characteristics of individuals or populations, backwards in time, to their common ancestors.|Ancestral reconstruction is often used to recover possible ancestral character states of ancient, extinct organisms.",FALSE,,,http://edamontology.org/operation_0324,,1.15,,,,,,,,,,,,operation_3745,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The extrapolation of empirical characteristics of individuals or populations, backwards in time, to their common ancestors.",Character mapping|Character optimisation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3755,PTM localisation,Site localisation| PTM scoring,Site localisation of post-translational modifications in peptide or protein mass spectra.,FALSE,,,http://edamontology.org/operation_3645,,1.16,,,,,,,,,,,,operation_3755,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Site localisation of post-translational modifications in peptide or protein mass spectra.,Site localisation| PTM scoring,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3760,Service management,Endpoint management,Operations concerning the handling and use of other tools.,FALSE,,,http://edamontology.org/operation_0004,,1.16,,,,,,,,,,,,operation_3760,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Operations concerning the handling and use of other tools.,,Endpoint management,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3761,Service discovery,,An operation supporting the browsing or discovery of other tools and services.,FALSE,,,http://edamontology.org/operation_3760,,1.16,,,,,,,,,,,,operation_3761,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An operation supporting the browsing or discovery of other tools and services.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3762,Service composition,,"An operation supporting the aggregation of other services (at least two) into a funtional unit, for the automation of some task.",FALSE,,,http://edamontology.org/operation_3760,,1.16,,,,,,,,,,,,operation_3762,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An operation supporting the aggregation of other services (at least two) into a funtional unit, for the automation of some task.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3763,Service invocation,,An operation supporting the calling (invocation) of other tools and services.,FALSE,,,http://edamontology.org/operation_3760,,1.16,,,,,,,,,,,,operation_3763,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An operation supporting the calling (invocation) of other tools and services.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3766,Weighted correlation network analysis,WGCNA|Weighted gene co-expression network analysis,A data mining method typically used for studying biological networks based on pairwise correlations between variables.,FALSE,,,http://edamontology.org/operation_2497,,1.16,,,,,,,,,,,,operation_3766,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,A data mining method typically used for studying biological networks based on pairwise correlations between variables.,WGCNA|Weighted gene co-expression network analysis,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3767,Protein identification,Protein inference,"Identification of protein, for example from one or more peptide identifications by tandem mass spectrometry.",FALSE,,,http://edamontology.org/operation_2502|http://edamontology.org/operation_3214,,1.16,,,,,,,,,,,,operation_3767,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Identification of protein, for example from one or more peptide identifications by tandem mass spectrometry.",Protein inference,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3778,Text annotation,Literature annotation|Article annotation,"Text annotation is the operation of adding notes, data and metadata, recognised entities and concepts, and their relations to a text (such as a scientific article).",FALSE,,,http://edamontology.org/operation_0226,,1.16,,,,,,,,,,,,operation_3778,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Text annotation is the operation of adding notes, data and metadata, recognised entities and concepts, and their relations to a text (such as a scientific article).",,Literature annotation|Article annotation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3791,Collapsing methods,,"A method whereby data on several variants are ""collapsed"" into a single covariate based on regions such as genes.|Genome-wide association studies (GWAS) analyse a genome-wide set of genetic variants in different individuals to see if any variant is associated with a trait. Traditional association techniques can lack the power to detect the significance of rare variants individually, or measure their compound effect (rare variant burden).  ""Collapsing methods"" were developed to overcome these problems. ",FALSE,,,http://edamontology.org/operation_3197,,1.17,,,,,,,,,,,,operation_3791,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A method whereby data on several variants are ""collapsed"" into a single covariate based on regions such as genes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3792,miRNA analysis,,"The analysis of microRNAs (miRNAs) : short, highly conserved small noncoding RNA molecules that are naturally occurring plant and animal genomes.",FALSE,,,http://edamontology.org/operation_2495,,1.17,,,,,,,,,,,,operation_3792,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The analysis of microRNAs (miRNAs) : short, highly conserved small noncoding RNA molecules that are naturally occurring plant and animal genomes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3793,Read summarisation,,Counting and summarising the number of short sequence reads that map to genomic features.,FALSE,,,http://edamontology.org/operation_2478,,1.17,,,,,,,,,,,,operation_3793,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Counting and summarising the number of short sequence reads that map to genomic features.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3795,In vitro selection,,"A technique whereby molecules with desired properties and function are isolated from libraries of random molecules, through iterative cycles of selection, amplification, and mutagenesis.",FALSE,,,http://edamontology.org/operation_3095,,1.17,,,,,,,,,,,,operation_3795,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A technique whereby molecules with desired properties and function are isolated from libraries of random molecules, through iterative cycles of selection, amplification, and mutagenesis.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3797,Rarefaction,,"The calculation of species richness for a number of individual samples, based on plots of the number of species as a function of the number of samples (rarefaction curves).",FALSE,,,http://edamontology.org/operation_0004,,1.17,,,,,,,,,,,,operation_3797,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The calculation of species richness for a number of individual samples, based on plots of the number of species as a function of the number of samples (rarefaction curves).",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3798,Read binning,Binning,An operation which groups reads or contigs and assigns them to operational taxonomic units.|Binning methods use one or a combination of compositional features or sequence similarity.,FALSE,,,http://edamontology.org/operation_2478,,1.17,,,,,,,,,,,,operation_3798,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Binning,,,An operation which groups reads or contigs and assigns them to operational taxonomic units.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3799,Quantification,Quantitation,Counting and measuring experimentally determined observations into quantities.,FALSE,,,http://edamontology.org/operation_0004,,1.17,,,,,,,,,,,,operation_3799,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Counting and measuring experimentally determined observations into quantities.,Quantitation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/operation_3800,RNA-Seq quantification,RNA-Seq quantitation,"Quantification of data arising from RNA-Seq high-throughput sequencing, typically the quantification of transcript abundances durnig transcriptome analysis in a gene expression study.
",FALSE,,,http://edamontology.org/operation_3799,,1.17,,,,,,,,,,,,operation_3800,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Quantification of data arising from RNA-Seq high-throughput sequencing, typically the quantification of transcript abundances durnig transcriptome analysis in a gene expression study.
",RNA-Seq quantitation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3801,Spectral library search,,Match experimentally measured mass spectrum to a spectrum in a spectral library or database.,FALSE,,,http://edamontology.org/operation_3631,,1.17,,,,,,,,,,,,operation_3801,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Match experimentally measured mass spectrum to a spectrum in a spectral library or database.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3802,Sorting,,Sort a set of files or data items according to some property.,FALSE,,,http://edamontology.org/operation_2409,,1.17,,,,,,,,,,,,operation_3802,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sort a set of files or data items according to some property.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/operation_3803,Natural product identification,Metabolite identification,"Mass spectra identification of compounds that are produced by living systems. Including polyketides, terpenoids, phenylpropanoids, alkaloids and antibiotics.",FALSE,,,http://edamontology.org/operation_3214,,1.17,,,,,,,,,,,,operation_3803,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Metabolite identification,,,"Mass spectra identification of compounds that are produced by living systems. Including polyketides, terpenoids, phenylpropanoids, alkaloids and antibiotics.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#operations,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0003,Topic,sumo:FieldOfStudy,"A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.",FALSE,,,http://www.w3.org/2002/07/owl#Thing,,beta12orEarlier,,,,,,,,,,,,topic_0003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.",,,sumo:FieldOfStudy,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,Not recommended for annotation in bio.tools.
http://edamontology.org/topic_0077,Nucleic acids,Nucleic acid informatics|Nucleic acid bioinformatics|Nucleic acid physicochemistry|Nucleic acid properties,"The processing and analysis of nucleic acid sequence, structural and other data.",FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0077,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The processing and analysis of nucleic acid sequence, structural and other data.",Nucleic acid informatics|Nucleic acid bioinformatics,Nucleic acid physicochemistry|Nucleic acid properties,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0078,Proteins,Protein informatics|Protein bioinformatics|Protein databases,"Archival, processing and analysis of protein data, typically molecular sequence and structural data.",FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Archival, processing and analysis of protein data, typically molecular sequence and structural data.",Protein informatics|Protein bioinformatics,Protein databases,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0079,Metabolites,,"The structures of reactants or products of metabolism, for example small molecules such as including vitamins, polyols, nucleotides and amino acids.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0079,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The structures of reactants or products of metabolism, for example small molecules such as including vitamins, polyols, nucleotides and amino acids.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0154,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0080,Sequence analysis,Sequences|Sequence databases,"The archival, processing and analysis of molecular sequences (monomer composition of polymers) including molecular sequence data resources, sequence sites, alignments, motifs and profiles.",FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0080,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The archival, processing and analysis of molecular sequences (monomer composition of polymers) including molecular sequence data resources, sequence sites, alignments, motifs and profiles.",Sequences,Sequence databases,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0081,Structure analysis,Structural bioinformatics|Structure databases|Computational structural biology|Structure data resources,"The curation, processing and analysis of the structure of biological molecules, typically proteins and nucleic acids and other macromolecules.|This includes related concepts such as structural properties, alignments and structural motifs.",FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0081,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The curation, processing and analysis of the structure of biological molecules, typically proteins and nucleic acids and other macromolecules.",Structural bioinformatics,Structure databases|Computational structural biology|Structure data resources,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0082,Structure prediction,RNA structure prediction|Nucleic acid folding|Nucleic acid design|DNA structure prediction|Protein fold recognition|Protein structure prediction|Nucleic acid structure prediction,"The prediction of molecular structure, including the prediction, modelling, recognition or design of protein secondary or tertiary structure or other structural features, and the folding of nucleic acid molecules and the prediction or design of nucleic acid (typically RNA) sequences with specific conformations.

|This includes the recognition (prediction and assignment) of known protein structural domains or folds in protein sequence(s), for example by threading, or the alignment of molecular sequences to structures, structural (3D) profiles or templates (representing a structure or structure alignment).",FALSE,,,http://edamontology.org/topic_0081,,beta12orEarlier,,,,,,,,,,,,topic_0082,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The prediction of molecular structure, including the prediction, modelling, recognition or design of protein secondary or tertiary structure or other structural features, and the folding of nucleic acid molecules and the prediction or design of nucleic acid (typically RNA) sequences with specific conformations.

",,RNA structure prediction|Nucleic acid folding|Nucleic acid design|DNA structure prediction|Protein fold recognition|Protein structure prediction|Nucleic acid structure prediction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0083,Alignment,,"The alignment (equivalence between sites) of molecular sequences, structures or profiles (representing a sequence or structure alignment).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0083,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080|http://edamontology.org/topic_0081,,,,,"The alignment (equivalence between sites) of molecular sequences, structures or profiles (representing a sequence or structure alignment).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0084,Phylogeny,Phylogeny reconstruction|Phylogenetic dating|Phylogenetic simulation|Phylogenetic clocks|Phylogenetic stratigraphy,"The study of evolutionary relationships amongst organisms.|This includes diverse phylogenetic methods, including phylogenetic tree construction, typically from molecular sequence or morphological data, methods that simulate DNA sequence evolution, a phylogenetic tree or the underlying data, or which estimate or use molecular clock and stratigraphic (age) data, methods for studying gene evolution etc.",FALSE,,,http://edamontology.org/topic_3299|http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0084,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of evolutionary relationships amongst organisms.,,Phylogeny reconstruction|Phylogenetic dating|Phylogenetic simulation|Phylogenetic clocks|Phylogenetic stratigraphy,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0085,Functional genomics,,"The study of gene or protein functions and their interactions in totality in a given organism, tissue, cell etc.",FALSE,,,http://edamontology.org/topic_0622|http://edamontology.org/topic_1775,,beta12orEarlier,,,,,,,,,,,,topic_0085,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of gene or protein functions and their interactions in totality in a given organism, tissue, cell etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0089,Ontology and terminology,Applied ontology|Ontologies|Terminology|Ontology,"The conceptualisation, categorisation and nomenclature (naming) of entities or phenomena within biology or bioinformatics. This includes formal ontologies, controlled vocabularies, structured glossary, symbols and terminology or other related resource.",FALSE,,,http://edamontology.org/topic_0605,,beta12orEarlier,,,,,,,,,,,,topic_0089,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The conceptualisation, categorisation and nomenclature (naming) of entities or phenomena within biology or bioinformatics. This includes formal ontologies, controlled vocabularies, structured glossary, symbols and terminology or other related resource.",,Applied ontology|Ontologies|Terminology|Ontology,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0090,Information retrieval,,The search and query of data sources (typically databases or ontologies) in order to retrieve entries or other information.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0090,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The search and query of data sources (typically databases or ontologies) in order to retrieve entries or other information.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3071,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0091,Bioinformatics,,"The archival, curation, processing and analysis of complex biological data.|This includes data  processing in general, including basic handling of files and databases, datatypes, workflows and annotation.",FALSE,,,http://edamontology.org/topic_0605,,beta12orEarlier,,,,,,,,,,,,topic_0091,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.6 Bioinformatics,"The archival, curation, processing and analysis of complex biological data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0092,Data visualisation,Computer graphics|Data rendering,"Rendering (drawing on a computer screen) or visualisation of molecular sequences, structures or other biomolecular data.",FALSE,,,http://edamontology.org/topic_3316,,beta12orEarlier,,,,,,,,,,,,topic_0092,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Computer graphics,,VT 1.2.5 Computer graphics,"Rendering (drawing on a computer screen) or visualisation of molecular sequences, structures or other biomolecular data.",Data rendering,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0094,Nucleic acid thermodynamics,,The study of the thermodynamic properties of a nucleic acid.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,topic_0094,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0097,,,,,The study of the thermodynamic properties of a nucleic acid.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0097,Nucleic acid structure analysis,Nucleic acid structure|Nucleic acid denaturation|Nucleic acid thermodynamics|DNA melting|RNA structure|RNA alignment|RNA structure alignment,"The archival, curation, processing and analysis of nucleic acid structural information, such as whole structures, structural features and alignments, and associated annotation.|Includes secondary and tertiary nucleic acid structural data, nucleic acid thermodynamic, thermal and conformational properties including DNA or DNA/RNA denaturation (melting) etc.",FALSE,,,http://edamontology.org/topic_0077|http://edamontology.org/topic_0081,,beta12orEarlier,,,,,,,,,,,,topic_0097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The archival, curation, processing and analysis of nucleic acid structural information, such as whole structures, structural features and alignments, and associated annotation.",Nucleic acid structure,Nucleic acid denaturation|Nucleic acid thermodynamics|DNA melting|RNA structure|RNA alignment|RNA structure alignment,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0099,RNA,Small RNA,RNA sequences and structures.,FALSE,,,http://edamontology.org/topic_0077,,beta12orEarlier,,,,,,,,,,,,topic_0099,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA sequences and structures.,,Small RNA,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0100,Nucleic acid restriction,,"Topic for the study of restriction enzymes, their cleavage sites and the restriction of nucleic acids.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0100,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0821,,,,,"Topic for the study of restriction enzymes, their cleavage sites and the restriction of nucleic acids.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0102,Mapping,Genetic linkage|Synteny|Linkage|Linkage mapping,"The mapping of complete (typically nucleotide) sequences. Mapping (in the sense of short read alignment, or more generally, just alignment) has application in RNA-Seq analysis (mapping of transcriptomics reads), variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping of WGS reads). |This includes resources that aim to identify, map or analyse genetic markers in DNA sequences, for example to produce a genetic (linkage) map of a chromosome or genome or to analyse genetic linkage and synteny. It also includes resources for physical (sequence) maps of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers.  It also covers for example the alignment of sequences of (typically millions) of short reads to a reference genome.  ",FALSE,,,http://edamontology.org/topic_0080,,beta12orEarlier,,,,,,,,,,,,topic_0102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The mapping of complete (typically nucleotide) sequences. Mapping (in the sense of short read alignment, or more generally, just alignment) has application in RNA-Seq analysis (mapping of transcriptomics reads), variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping of WGS reads). ",,Genetic linkage|Synteny|Linkage|Linkage mapping,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0107,Genetic codes and codon usage,,"The study of codon usage in nucleotide sequence(s), genetic codes and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0107,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0203,,,,,"The study of codon usage in nucleotide sequence(s), genetic codes and so on.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0108,Protein expression,Translation,The translation of mRNA into protein and subsequent protein processing in the cell.,FALSE,,,http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0108,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The translation of mRNA into protein and subsequent protein processing in the cell.,,Translation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0109,Gene finding,,"Methods that aims to identify, predict, model or analyse genes or gene structure in DNA sequences.|This includes the study of promoters, coding regions, splice sites, etc. Methods for gene prediction might be ab initio, based on phylogenetic comparisons, use motifs, sequence features, support vector machine, alignment etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0109,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0114,,,,,"Methods that aims to identify, predict, model or analyse genes or gene structure in DNA sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0110,Transcription,,The transcription of DNA into mRNA.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0110,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0203,,,,,The transcription of DNA into mRNA.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0111,Promoters,,Promoters in DNA sequences (region of DNA that facilitates the transcription of a particular gene by binding RNA polymerase and transcription factor proteins).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0111,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0749,,,,,Promoters in DNA sequences (region of DNA that facilitates the transcription of a particular gene by binding RNA polymerase and transcription factor proteins).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0112,Nucleic acid folding,,The folding (in 3D space) of nucleic acid molecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0112,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The folding (in 3D space) of nucleic acid molecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0097,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0114,Gene structure,Gene features|Fusion genes,"Gene structure, regions which make an RNA product and features such as promoters, coding regions, gene fusion, splice sites etc.
|This includes the study of promoters, coding regions etc.|This incudes operons (operators, promoters and genes) from a bacterial genome.  For example the operon leader and trailer gene, gene composition of the operon and associated information.",FALSE,,,http://edamontology.org/topic_3321,,beta12orEarlier,,,,,,,,,,,,topic_0114,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Gene structure, regions which make an RNA product and features such as promoters, coding regions, gene fusion, splice sites etc.
",Gene features,Fusion genes,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0121,Proteomics,Peptide identification|Protein and peptide identification|Metaproteomics,"Protein and peptide identification, especially in the study of whole proteomes of organisms.|Includes metaproteomics: proteomics analysis of an environmental sample.|Proteomics includes any methods (especially high-throughput) that separate, characterize and identify expressed proteins such as mass spectrometry, two-dimensional gel electrophoresis and protein microarrays, as well as in-silico methods that perform proteolytic or mass calculations on a protein sequence and other analyses of protein production data, for example in different cells or tissues.",FALSE,,,http://edamontology.org/topic_3391,,beta12orEarlier,,,,,,,,,,,,topic_0121,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein and peptide identification, especially in the study of whole proteomes of organisms.",,Peptide identification|Protein and peptide identification|Metaproteomics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0122,Structural genomics,,The elucidation of the three dimensional structure for all (available) proteins in a given organism.,FALSE,,,http://edamontology.org/topic_0622|http://edamontology.org/topic_1317,,beta12orEarlier,,,,,,,,,,,,topic_0122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The elucidation of the three dimensional structure for all (available) proteins in a given organism.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0123,Protein properties,Protein physicochemistry|Protein hydropathy,"The study of the physical and biochemical properties of peptides and proteins, for example the hydrophobic, hydrophilic and charge properties of a protein.",FALSE,,,http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of the physical and biochemical properties of peptides and proteins, for example the hydrophobic, hydrophilic and charge properties of a protein.",Protein physicochemistry,Protein hydropathy,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0128,Protein interactions,Protein-nucleic acid interactions|Protein-RNA interaction|Protein-ligand interactions|Protein-protein interactions|Protein interaction networks|Protein-DNA interaction,"Protein-protein, protein-DNA/RNA and protein-ligand interactions, including analysis of known interactions and prediction of putative interactions.|This includes experimental (e.g. yeast two-hybrid) and computational analysis techniques.",FALSE,,,http://edamontology.org/topic_0602|http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0128,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein-protein, protein-DNA/RNA and protein-ligand interactions, including analysis of known interactions and prediction of putative interactions.",,Protein-nucleic acid interactions|Protein-RNA interaction|Protein-ligand interactions|Protein-protein interactions|Protein interaction networks|Protein-DNA interaction,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0130,"Protein folding, stability and design",Protein stability|Protein design|Protein residue interactions|Protein folding|Rational protein design,"Protein stability, folding (in 3D space) and protein sequence-structure-function relationships.  This includes for example study of inter-atomic or inter-residue interactions in protein (3D) structures, the effect of mutation, and the design of proteins with specific properties, typically by designing changes (via site-directed mutagenesis) to an existing protein.",FALSE,,,http://edamontology.org/topic_2814,,beta12orEarlier,,,,,,,,,,,,topic_0130,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein stability, folding (in 3D space) and protein sequence-structure-function relationships.  This includes for example study of inter-atomic or inter-residue interactions in protein (3D) structures, the effect of mutation, and the design of proteins with specific properties, typically by designing changes (via site-directed mutagenesis) to an existing protein.",,Protein stability|Protein design|Protein residue interactions|Protein folding|Rational protein design,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0133,Two-dimensional gel electrophoresis,,Two-dimensional gel electrophoresis image and related data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0133,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0121,,,,,Two-dimensional gel electrophoresis image and related data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0134,Mass spectrometry,,An analytical chemistry technique that measures the mass-to-charge ratio and abundance of ions in the gas phase.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0134,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An analytical chemistry technique that measures the mass-to-charge ratio and abundance of ions in the gas phase.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3520,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0135,Protein microarrays,,Protein microarray data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0135,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0121,,,,,Protein microarray data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0137,Protein hydropathy,,"The study of the hydrophobic, hydrophilic and charge properties of a protein.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0137,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0123,,,,,"The study of the hydrophobic, hydrophilic and charge properties of a protein.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0140,Protein targeting and localisation,Protein sorting|Protein targeting|Protein localisation,"The study of how proteins are transported within and without the cell, including signal peptides, protein subcellular localisation and export.",FALSE,,,http://edamontology.org/topic_0108,,beta12orEarlier,,,,,,,,,,,,topic_0140,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of how proteins are transported within and without the cell, including signal peptides, protein subcellular localisation and export.",,Protein sorting|Protein targeting|Protein localisation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0141,Protein cleavage sites and proteolysis,,Enzyme or chemical cleavage sites and proteolytic or mass calculations on a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0141,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0121,,,,,Enzyme or chemical cleavage sites and proteolytic or mass calculations on a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0143,Protein structure comparison,,The comparison of two or more protein structures.|Use this concept for methods that are exclusively for protein structure.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0143,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The comparison of two or more protein structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0081,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0144,Protein residue interactions,,The processing and analysis of inter-atomic or inter-residue interactions in protein (3D) structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0144,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0130,,,,,The processing and analysis of inter-atomic or inter-residue interactions in protein (3D) structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0147,Protein-protein interactions,,"Protein-protein interactions, individual interactions and networks, protein complexes, protein functional coupling etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0147,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0128,,,,,"Protein-protein interactions, individual interactions and networks, protein complexes, protein functional coupling etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0148,Protein-ligand interactions,,Protein-ligand (small molecule) interactions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0148,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0128,,,,,Protein-ligand (small molecule) interactions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0149,Protein-nucleic acid interactions,,Protein-DNA/RNA interactions.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0149,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0128,,,,,Protein-DNA/RNA interactions.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0150,Protein design,,"The design of proteins with specific properties, typically by designing changes (via site-directed mutagenesis) to an existing protein.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0150,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0130,,,,,"The design of proteins with specific properties, typically by designing changes (via site-directed mutagenesis) to an existing protein.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0151,G protein-coupled receptors (GPCR),,G-protein coupled receptors (GPCRs).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0151,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0820,,,,,G-protein coupled receptors (GPCRs).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0152,Carbohydrates,,"Carbohydrates, typically including structural information.",FALSE,,,http://edamontology.org/topic_0081,,beta12orEarlier,,,,,,,,,,,,topic_0152,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Carbohydrates, typically including structural information.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0153,Lipids,Lipidomics,Lipids and their structures.,FALSE,,,http://edamontology.org/topic_0081,,beta12orEarlier,,,,,,,,,,,,topic_0153,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Lipids and their structures.,Lipidomics,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0154,Small molecules,Chemical structures|Toxins and targets|Amino acids|Targets|Drugs and target structures|Peptides|Toxins|Peptides and amino acids|Metabolite structures|Metabolites|Target structures|Drug structures|Drug targets|CHEBI:23367,"Small molecules of biological significance, typically archival, curation, processing and analysis of structural information.|This concept excludes macromolecules such as proteins and nucleic acids.|This includes the structures of drugs, drug target, their interactions and binding affinities.  Also the structures of reactants or products of metabolism, for example small molecules such as including vitamins, polyols, nucleotides and amino acids.  Also the physicochemical, biochemical or structural properties of amino acids or peptides.  Also structural and associated data for toxic chemical substances.|Small molecules include organic molecules, metal-organic compounds, small polypeptides, small polysaccharides and oligonucleotides.  Structural data is usually included.",FALSE,,,http://edamontology.org/topic_0081,,beta12orEarlier,,,,,,,,,,,,topic_0154,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Small molecules of biological significance, typically archival, curation, processing and analysis of structural information.",,Chemical structures|Toxins and targets|Amino acids|Targets|Drugs and target structures|Peptides|Toxins|Peptides and amino acids|Metabolite structures|Metabolites|Target structures|Drug structures|Drug targets,CHEBI:23367,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0156,Sequence editing,,"Edit, convert or otherwise change a molecular sequence, either randomly or specifically.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0156,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080|http://edamontology.org/topic_0091,,,,,"Edit, convert or otherwise change a molecular sequence, either randomly or specifically.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0157,"Sequence composition, complexity and repeats",Protein repeats|Sequence repeats|Nucleic acid repeats|Repeat sequences|Protein sequence repeats|Sequence complexity|Sequence composition|Low complexity sequences,"The archival, processing and analysis of the basic character composition of molecular sequences, for example character or word frequency, ambiguity, complexity, particularly regions of low complexity, and repeats or the repetitive nature of molecular sequences.|This includes repetitive elements within a nucleic acid sequence, e.g.
long terminal repeats (LTRs); sequences (typically retroviral) directly repeated at  both ends of a sequence and other types of repeating unit.|This includes short repetitive subsequences (repeat sequences) in a protein sequence.",FALSE,,,http://edamontology.org/topic_0080,,beta12orEarlier,,,,,,,,,,,,topic_0157,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The archival, processing and analysis of the basic character composition of molecular sequences, for example character or word frequency, ambiguity, complexity, particularly regions of low complexity, and repeats or the repetitive nature of molecular sequences.",,Protein repeats|Sequence repeats|Nucleic acid repeats|Repeat sequences|Protein sequence repeats|Sequence complexity|Sequence composition|Low complexity sequences,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0158,Sequence motifs,Motifs,"Conserved patterns (motifs) in molecular sequences, that (typically) describe functional or other key sites.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0158,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160,,,,,"Conserved patterns (motifs) in molecular sequences, that (typically) describe functional or other key sites.",Motifs,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0159,Sequence comparison,,"The comparison of two or more molecular sequences, for example sequence alignment and clustering.|The comparison might be on the basis of sequence, physico-chemical or some other properties of the sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0159,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The comparison of two or more molecular sequences, for example sequence alignment and clustering.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_0160,"Sequence sites, features and motifs",Functional sites|Sequence features|Sequence sites|Sequence profiles|Sequence motifs|HMMs,"The archival, detection, prediction and analysis of positional features such as functional and other key sites, in molecular sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.",FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_0160,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The archival, detection, prediction and analysis of positional features such as functional and other key sites, in molecular sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.",,Functional sites|Sequence features|Sequence sites|Sequence profiles|Sequence motifs|HMMs,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0163,Sequence database search,,"Search and retrieve molecular sequences that are similar to a sequence-based query (typically a simple sequence).|The query is a sequence-based entity such as another sequence, a motif or profile.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0163,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,Search and retrieve molecular sequences that are similar to a sequence-based query (typically a simple sequence).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0164,Sequence clustering,,"The comparison and grouping together of molecular sequences on the basis of their similarities.|This includes systems that generate, process and analyse sequence clusters.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0164,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The comparison and grouping together of molecular sequences on the basis of their similarities.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/topic_0166,Protein structural motifs and surfaces,Protein 3D motifs|Protein structural motifs|Protein structural features|Protein surfaces|Structural motifs,"Structural features or common 3D motifs within protein structures, including the surface of a protein structure, such as biological interfaces with other molecules.|This includes conformation of conserved substructures, conserved geometry (spatial arrangement) of secondary structure or protein backbone, solvent-exposed surfaces, internal cavities, the analysis of shape, hydropathy, electrostatic patches, role and functions etc.",FALSE,,,http://edamontology.org/topic_2814,,beta12orEarlier,,,,,,,,,,,,topic_0166,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Structural features or common 3D motifs within protein structures, including the surface of a protein structure, such as biological interfaces with other molecules.",Protein 3D motifs,Protein structural motifs|Protein structural features|Protein surfaces|Structural motifs,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0167,Structural (3D) profiles,,"The processing, analysis or use of some type of structural (3D) profile or template; a computational entity (typically a numerical matrix) that is derived from and represents a structure or structure alignment.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0167,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0081,,,,,"The processing, analysis or use of some type of structural (3D) profile or template; a computational entity (typically a numerical matrix) that is derived from and represents a structure or structure alignment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0172,Protein structure prediction,,"The prediction, modelling, recognition or design of protein secondary or tertiary structure or other structural features.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0172,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The prediction, modelling, recognition or design of protein secondary or tertiary structure or other structural features.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_0173,Nucleic acid structure prediction,,The folding of nucleic acid molecules and the prediction or design of nucleic acid (typically RNA) sequences with specific conformations.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0173,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The folding of nucleic acid molecules and the prediction or design of nucleic acid (typically RNA) sequences with specific conformations.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0097,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_0174,Ab initio structure prediction,,"The prediction of three-dimensional structure of a (typically protein) sequence from first principles, using a physics-based or empirical scoring function and without using explicit structural templates.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0174,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The prediction of three-dimensional structure of a (typically protein) sequence from first principles, using a physics-based or empirical scoring function and without using explicit structural templates.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/topic_0175,Homology modelling,,The modelling of the three-dimensional structure of a protein using known sequence and structural data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0175,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2275,,,,,The modelling of the three-dimensional structure of a protein using known sequence and structural data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/topic_0176,Molecular dynamics,Molecular motions|Molecular flexibility|Protein dynamics,The study and simulation of molecular (typically protein) conformation using a computational model of physical forces and computer simulation.|This includes resources concerning flexibility and motion in protein and other molecular structures.,FALSE,,,http://edamontology.org/topic_0082,,beta12orEarlier,,,,,,,,,,,,topic_0176,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Molecular motions|Molecular flexibility,,,The study and simulation of molecular (typically protein) conformation using a computational model of physical forces and computer simulation.,,Protein dynamics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0177,Molecular docking,,The modelling the structure of proteins in complex with small molecules or other macromolecules.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0177,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The modelling the structure of proteins in complex with small molecules or other macromolecules.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2275,,,,,,,,,,,TRUE,,1.12,,,,,,,
http://edamontology.org/topic_0178,Protein secondary structure prediction,,The prediction of secondary or supersecondary structure of protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0178,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The prediction of secondary or supersecondary structure of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0179,Protein tertiary structure prediction,,The prediction of tertiary structure of protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0179,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The prediction of tertiary structure of protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0180,Protein fold recognition,,The recognition (prediction and assignment) of known protein structural domains or folds in protein sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0180,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The recognition (prediction and assignment) of known protein structural domains or folds in protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_0182,Sequence alignment,,"The alignment of molecular sequences or sequence profiles (representing sequence alignments).|This includes the generation of alignments (the identification of equivalent sites), the analysis of alignments, editing, visualisation, alignment databases, the alignment (equivalence between sites) of sequence profiles (representing sequence alignments) and so on.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The alignment of molecular sequences or sequence profiles (representing sequence alignments).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/topic_0183,Structure alignment,,"The superimposition of molecular tertiary structures or structural (3D) profiles (representing a structure or structure alignment).|This includes the generation, storage, analysis, rendering etc. of structure alignments.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0183,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The superimposition of molecular tertiary structures or structural (3D) profiles (representing a structure or structure alignment).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0081,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/topic_0184,Threading,,"The alignment of molecular sequences to structures, structural (3D) profiles or templates (representing a structure or structure alignment).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0184,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The alignment of molecular sequences to structures, structural (3D) profiles or templates (representing a structure or structure alignment).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0082,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0188,Sequence profiles and HMMs,,"Sequence profiles; typically a positional, numerical matrix representing a sequence alignment.|Sequence profiles include position-specific scoring matrix (position weight matrix), hidden Markov models etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0188,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160,,,,,"Sequence profiles; typically a positional, numerical matrix representing a sequence alignment.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0191,Phylogeny reconstruction,,"The reconstruction of a phylogeny (evolutionary relatedness amongst organisms), for example, by building a phylogenetic tree.|Currently too specific for the topic sub-ontology (but might be unobsoleted).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0191,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3293,,,,,"The reconstruction of a phylogeny (evolutionary relatedness amongst organisms), for example, by building a phylogenetic tree.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0194,Phylogenomics,,"The integrated study of evolutionary relationships and whole genome data, for example, in the analysis of species trees, horizontal gene transfer and evolutionary reconstruction.",FALSE,,,http://edamontology.org/topic_0622|http://edamontology.org/topic_0080,,beta12orEarlier,,,,,,,,,,,,topic_0194,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The integrated study of evolutionary relationships and whole genome data, for example, in the analysis of species trees, horizontal gene transfer and evolutionary reconstruction.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0195,Virtual PCR,,Simulated polymerase chain reaction (PCR).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0195,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0077,,,,,Simulated polymerase chain reaction (PCR).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0196,Sequence assembly,Assembly,"The assembly of fragments of a DNA sequence to reconstruct the original sequence.|Assembly has two broad types, de-novo and re-sequencing. Re-sequencing is a specialised case of assembly, where an assembled (typically de-novo assembled) reference genome is available and is about 95% identical to the re-sequenced genome. All other cases of assembly are 'de-novo'.",FALSE,,,http://edamontology.org/topic_0080,,beta12orEarlier,,,,,,,,,,,,topic_0196,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The assembly of fragments of a DNA sequence to reconstruct the original sequence.,,Assembly,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0199,Genetic variation,DNA variation|Polymorphism|Mutation|Somatic mutations,"Stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms.",FALSE,,,http://edamontology.org/topic_3321,,beta12orEarlier,,,,,,,,,,,,topic_0199,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms.",DNA variation,Polymorphism|Mutation|Somatic mutations,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0200,Microarrays,,"Microarrays, for example, to process microarray data or design probes and experiments.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0200,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0203,,,,,"Microarrays, for example, to process microarray data or design probes and experiments.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0202,Pharmacology,Computational pharmacology|Pharmacoinformatics,The study of drugs and their effects or responses in living systems. ,FALSE,,,http://edamontology.org/topic_3344,,beta12orEarlier,,,,,,,,,,,,topic_0202,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.7 Pharmacology and pharmacy,The study of drugs and their effects or responses in living systems. ,,Computational pharmacology|Pharmacoinformatics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0203,Gene expression,Codon usage|Transcription|Gene expression profiling|DNA microarrays,"The analysis of levels and patterns of synthesis of gene products (proteins and functional RNA) including interpretation in functional terms of gene expression data.|Gene expression levels are analysed by identifying, quantifying or comparing mRNA transcripts, for example using microarrays, RNA-seq, northern blots, gene-indexed expression profiles etc.|This includes the study of codon usage in nucleotide sequence(s), genetic codes and so on.",FALSE,,,http://edamontology.org/topic_3321,,beta12orEarlier,,,,,,,,,,,,topic_0203,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0197,,,,The analysis of levels and patterns of synthesis of gene products (proteins and functional RNA) including interpretation in functional terms of gene expression data.,,Codon usage|Transcription|Gene expression profiling|DNA microarrays,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0204,Gene regulation,Regulatory genomics,The regulation of gene expression.,FALSE,,,http://edamontology.org/topic_0203,,beta12orEarlier,,,,,,,,,,,,topic_0204,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The regulation of gene expression.,,Regulatory genomics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0208,Pharmacogenomics,Pharmacogenetics,"The influence of genotype on drug response, for example by correlating gene expression or single-nucleotide polymorphisms with drug efficacy or toxicity.",FALSE,,,http://edamontology.org/topic_0622|http://edamontology.org/topic_0202,,beta12orEarlier,,,,,,,,,,,,topic_0208,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The influence of genotype on drug response, for example by correlating gene expression or single-nucleotide polymorphisms with drug efficacy or toxicity.",,Pharmacogenetics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0209,Medicinal chemistry,Drug design,"The design and chemical synthesis of bioactive molecules, for example drugs or potential drug compounds, for medicinal purposes.|This includes methods that search compound collections, generate or analyse drug 3D conformations, identify drug targets with structural docking etc.",FALSE,,,http://edamontology.org/topic_3336|http://edamontology.org/topic_3371,,beta12orEarlier,,,,,,,,,,,,topic_0209,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.4 Medicinal chemistry,"The design and chemical synthesis of bioactive molecules, for example drugs or potential drug compounds, for medicinal purposes.",Drug design,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0210,Fish,,"Information on a specific fish genome including molecular sequences, genes and annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0210,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Information on a specific fish genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0211,Flies,,"Information on a specific fly genome including molecular sequences, genes and annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0211,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Information on a specific fly genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0213,Mice or rats,,"Information on a specific mouse or rat genome including molecular sequences, genes and annotation.|The resource may be specific to a group of mice / rats or all mice / rats.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_0213,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Information on a specific mouse or rat genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_2820,,,,,,
http://edamontology.org/topic_0215,Worms,,"Information on a specific worm genome including molecular sequences, genes and annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0215,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Information on a specific worm genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0217,Literature analysis,,"The processing and analysis of the bioinformatics literature and bibliographic data, such as literature search and query.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0217,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The processing and analysis of the bioinformatics literature and bibliographic data, such as literature search and query.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0218,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0218,Natural language processing,NLP|Literature mining|BioNLP|Text analytics|Text data mining|Text mining,"The processing and analysis of natural language, such as scientific literature in English, in order to extract data and information, or to enable human-computer interaction.",FALSE,,,http://edamontology.org/topic_3068|http://edamontology.org/topic_3316,,beta12orEarlier,,,,,,,,,,,,topic_0218,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The processing and analysis of natural language, such as scientific literature in English, in order to extract data and information, or to enable human-computer interaction.",NLP,Literature mining|BioNLP|Text analytics|Text data mining|Text mining,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0219,"Data submission, annotation and curation",Database curation,"Deposition and curation of database accessions, including annotation, typically with terms from a controlled vocabulary.",FALSE,,,http://edamontology.org/topic_3071,,beta12orEarlier,,,,,,,,,,,,topic_0219,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Deposition and curation of database accessions, including annotation, typically with terms from a controlled vocabulary.",,Database curation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0220,"Document, record and content management",,"The management and manipulation of digital documents, including database records, files and reports.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0220,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The management and manipulation of digital documents, including database records, files and reports.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3489,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0221,Sequence annotation,,Annotation of a molecular sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0221,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0219,,,,,Annotation of a molecular sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0222,Genome annotation,,Annotation of a genome.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0222,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0219|http://edamontology.org/topic_0621,,,,,Annotation of a genome.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0593,NMR,Spectroscopy|NMR spectroscopy|Nuclear magnetic resonance spectroscopy|Nuclear Overhauser Effect Spectroscopy|Heteronuclear Overhauser Effect Spectroscopy|Rotational Frame Nuclear Overhauser Effect Spectroscopy|NOESY|ROESY|HOESY,"An analytical technique that exploits the magenetic properties of certain atomic nuclei to provide information on the structure, dynamics, reaction state and chemical environment of molecules.",FALSE,,,http://edamontology.org/topic_3382|http://edamontology.org/topic_1317,,beta12orEarlier,,,,,,,,,,,,topic_0593,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Spectroscopy,,,"An analytical technique that exploits the magenetic properties of certain atomic nuclei to provide information on the structure, dynamics, reaction state and chemical environment of molecules.",NMR spectroscopy|Nuclear magnetic resonance spectroscopy,Nuclear Overhauser Effect Spectroscopy|Heteronuclear Overhauser Effect Spectroscopy|Rotational Frame Nuclear Overhauser Effect Spectroscopy|NOESY|ROESY|HOESY,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0594,Sequence classification,,"The classification of molecular sequences based on some measure of their similarity.|Methods including sequence motifs, profile and other diagnostic elements which (typically) represent conserved patterns (of residues or properties) in molecular sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0594,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The classification of molecular sequences based on some measure of their similarity.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_0595,Protein classification,,"primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0595,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0623,,,,,"primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0598,Sequence motif or profile,,"Sequence motifs, or sequence profiles derived from an alignment of molecular sequences of a particular type.|This includes comparison, discovery, recognition etc. of sequence motifs.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0598,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160,,,,,"Sequence motifs, or sequence profiles derived from an alignment of molecular sequences of a particular type.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0601,Protein modifications,Protein post-translational modification|Post-translation modifications|Protein post-translational modifications|Protein chemical modifications|GO:0006464|MOD:00000,"Protein chemical modifications, e.g. post-translational modifications.|EDAM does not describe all possible protein modifications. For fine-grained annotation of protein modification use the Gene Ontology (children of concept GO:0006464) and/or the Protein Modifications ontology (children of concept MOD:00000)",FALSE,,,http://edamontology.org/topic_0108,,beta12orEarlier,,,,,,,,,,,,topic_0601,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein chemical modifications, e.g. post-translational modifications.",Protein post-translational modification,Post-translation modifications|Protein post-translational modifications|Protein chemical modifications,GO:0006464|MOD:00000,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0602,"Molecular interactions, pathways and networks",Biological models|Genetic information processing pathways|Interactions|Networks|Signal transduction pathways|Pathways|Biological pathways|Signaling pathways|Gene regulatory networks|Disease pathways|Metabolic pathways|Environmental information processing pathways|Molecular interactions|Biological networks|Cellular process pathways,"Molecular interactions, biological pathways, networks and other models.",FALSE,,,http://edamontology.org/topic_3307,,beta13,,,,,,,,,,,,topic_0602,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3076,,,,"Molecular interactions, biological pathways, networks and other models.",,Biological models|Genetic information processing pathways|Interactions|Networks|Signal transduction pathways|Pathways|Biological pathways|Signaling pathways|Gene regulatory networks|Disease pathways|Metabolic pathways|Environmental information processing pathways|Molecular interactions|Biological networks|Cellular process pathways,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0605,Informatics,Information science|Knowledge management|Information management,The study and practice of information processing and use of computer information systems.,FALSE,,,http://edamontology.org/topic_0003,,beta12orEarlier,,,,,,,,,,,,topic_0605,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.3 Information sciences|VT 1.3.99 Other|VT 1.3.3 Information retrieval|VT 1.3.5 Knowledge management|VT 1.3.4 Information management,The study and practice of information processing and use of computer information systems.,Information science|Knowledge management|Information management,,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0606,Literature data resources,,"Data resources for the biological or biomedical literature, either a primary source of literature or some derivative.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0606,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Data resources for the biological or biomedical literature, either a primary source of literature or some derivative.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3068,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0607,Laboratory information management,Laboratory resources,"Laboratory management and resources, for example, catalogues of biological resources for use in the lab including cell lines, viruses, plasmids, phages, DNA probes and primers and so on.",FALSE,,,http://edamontology.org/topic_0605,,beta12orEarlier,,,,,,,,,,,,topic_0607,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3071,,,,,"Laboratory management and resources, for example, catalogues of biological resources for use in the lab including cell lines, viruses, plasmids, phages, DNA probes and primers and so on.",,Laboratory resources,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0608,Cell and tissue culture,,General cell culture or data on a specific cell lines.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0608,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2229,,,,,General cell culture or data on a specific cell lines.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0610,Ecology,Environmental science|Ecological informatics|Computational ecology|Ecoinformatics,The ecological and environmental sciences and especially the application of information technology (ecoinformatics).,FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_0610,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Environmental science,,VT 1.5.15 Ecology,The ecological and environmental sciences and especially the application of information technology (ecoinformatics).,,Ecological informatics|Computational ecology|Ecoinformatics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0611,Electron microscopy,Electron diffraction experiment|Transmission electron microscopy|SEM|Scanning electron microscopy|TEM|Electron crystallography|Single particle electron microscopy,"The study of matter by studying the interference pattern from firing electrons at a sample, to analyse structures at resolutions higher than can be achieved using light.
",FALSE,,,http://edamontology.org/topic_3382|http://edamontology.org/topic_1317,,beta12orEarlier,,,,,,,,,,,,topic_0611,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Electron diffraction experiment,,,"The study of matter by studying the interference pattern from firing electrons at a sample, to analyse structures at resolutions higher than can be achieved using light.
",,Transmission electron microscopy|SEM|Scanning electron microscopy|TEM|Electron crystallography|Single particle electron microscopy,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0612,Cell cycle,,The cell cycle including key genes and proteins.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0612,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2229,,,,,The cell cycle including key genes and proteins.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0613,Peptides and amino acids,,"The physicochemical, biochemical or structural properties of amino acids or peptides.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0613,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The physicochemical, biochemical or structural properties of amino acids or peptides.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0154,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0616,Organelles,,"A specific organelle, or organelles in general, typically the genes and proteins (or genome and proteome).",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0616,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2229,,,,,"A specific organelle, or organelles in general, typically the genes and proteins (or genome and proteome).",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0617,Ribosomes,,"Ribosomes, typically of ribosome-related genes and proteins.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0617,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2229,,,,,"Ribosomes, typically of ribosome-related genes and proteins.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0618,Scents,,A database about scents.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0618,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0154,,,,,A database about scents.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0620,Drugs and target structures,,"The structures of drugs, drug target, their interactions and binding affinities.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0620,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The structures of drugs, drug target, their interactions and binding affinities.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0154,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0621,Model organisms,Organisms,"A specific organism, or group of organisms, used to study a particular aspect of biology.|This may include information on the genome (including molecular sequences and map, genes and annotation), proteome, as well as more general information about an organism.",FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_0621,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A specific organism, or group of organisms, used to study a particular aspect of biology.",Organisms,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0622,Genomics,Personal genomics|Viral genomics,"Whole genomes of one or more organisms, or genomes in general, such as meta-information on genomes, genome projects, gene names etc.",FALSE,,,http://edamontology.org/topic_3391,,beta12orEarlier,,,,,,,,,,,,topic_0622,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Whole genomes of one or more organisms, or genomes in general, such as meta-information on genomes, genome projects, gene names etc.",,Personal genomics|Viral genomics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0623,Gene and protein families,"Genes, gene family or system|Gene system|Gene family|Protein sequence classification|Protein families|Gene families","Particular gene(s), gene family or other gene group or system and their encoded proteins.Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group.|A protein families database might include the classifier (e.g. a sequence profile) used to build the classification.",FALSE,,,http://edamontology.org/topic_3321|http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0623,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Particular gene(s), gene family or other gene group or system and their encoded proteins.Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group.","Genes, gene family or system",Gene system|Gene family|Protein sequence classification|Protein families|Gene families,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0624,Chromosomes,,Study of chromosomes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0624,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Study of chromosomes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0654,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0625,Genotype and phenotype,Genotype and phenotype resources|Genotyping|Phenotyping,"The study of genetic constitution of a living entity, such as an individual, and organism, a cell and so on, typically with respect to a particular observable phenotypic traits, or resources concerning such traits, which might be an aspect of biochemistry, physiology, morphology, anatomy, development and so on.",FALSE,,,http://edamontology.org/topic_3053,,beta12orEarlier,,,,,,,,,,,,topic_0625,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of genetic constitution of a living entity, such as an individual, and organism, a cell and so on, typically with respect to a particular observable phenotypic traits, or resources concerning such traits, which might be an aspect of biochemistry, physiology, morphology, anatomy, development and so on.",Genotype and phenotype resources,Genotyping|Phenotyping,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0629,Gene expression and microarray,,"Gene expression e.g. microarray data, northern blots, gene-indexed expression profiles etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0629,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0203,,,,,"Gene expression e.g. microarray data, northern blots, gene-indexed expression profiles etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_0632,Probes and primers,Primers|Probes,"Molecular probes (e.g. a peptide probe or DNA microarray probe) or PCR primers and hybridisation oligos in a nucleic acid sequence.
|This includes the design of primers for PCR and DNA amplification or the design of molecular probes.",FALSE,,,http://edamontology.org/topic_0080,,beta12orEarlier,,,,,,,,,,,,topic_0632,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Molecular probes (e.g. a peptide probe or DNA microarray probe) or PCR primers and hybridisation oligos in a nucleic acid sequence.
",,Primers|Probes,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0634,Pathology,Disease,"Diseases, including diseases in general and the genes, gene variations and proteins involved in one or more specific diseases.",FALSE,,,http://edamontology.org/topic_3303,,beta12orEarlier,,,,,,,,,,,,topic_0634,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.6 Pathology,"Diseases, including diseases in general and the genes, gene variations and proteins involved in one or more specific diseases.",Disease,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0635,Specific protein resources,Specific protein,"A particular protein, protein family or other group of proteins.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0635,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0623,,,,,"A particular protein, protein family or other group of proteins.",Specific protein,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0637,Taxonomy,,"Organism classification, identification and naming.",FALSE,,,http://edamontology.org/topic_3299,,beta12orEarlier,,,,,,,,,,,,topic_0637,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.25 Taxonomy,"Organism classification, identification and naming.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0639,Protein sequence analysis,,"Archival, processing and analysis of protein sequences and sequence-based entities such as alignments, motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0639,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Archival, processing and analysis of protein sequences and sequence-based entities such as alignments, motifs and profiles.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/topic_0640,Nucleic acid sequence analysis,,"The archival, processing and analysis of nucleotide sequences and and sequence-based entities such as alignments, motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0640,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The archival, processing and analysis of nucleotide sequences and and sequence-based entities such as alignments, motifs and profiles.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/topic_0641,Repeat sequences,,The repetitive nature of molecular sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0641,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0157,,,,,The repetitive nature of molecular sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0642,Low complexity sequences,,"The (character) complexity of molecular sequences, particularly regions of low complexity.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0642,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0157,,,,,"The (character) complexity of molecular sequences, particularly regions of low complexity.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0644,Proteome,,A specific proteome including protein sequences and annotation.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0644,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,A specific proteome including protein sequences and annotation.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0654,DNA,DNA analysis|Ancient DNA|Chromosomes,"DNA sequences and structure, including processes such as methylation and replication.|The DNA sequences might be coding or non-coding sequences.",FALSE,,,http://edamontology.org/topic_0077,,beta12orEarlier,,,,,,,,,,,,topic_0654,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"DNA sequences and structure, including processes such as methylation and replication.",DNA analysis,Ancient DNA|Chromosomes,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0655,Coding RNA,,"Protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0655,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0659,"Functional, regulatory and non-coding RNA",small interfering RNA|Functional RNA|Regulatory RNA|miRNA|microRNA|small nucleolar RNA|Non-coding RNA|ncRNA|siRNA|snoRNA|snRNA|small nuclear RNA|piwi-interacting RNA|piRNA,"Non-coding or functional RNA sequences, including regulatory RNA sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA).|Non-coding RNA includes  piwi-interacting RNA (piRNA), small nuclear RNA (snRNA) and small nucleolar RNA (snoRNA).  Regulatory RNA includes microRNA (miRNA) - short single stranded RNA molecules that regulate gene expression, and small interfering RNA (siRNA).",FALSE,,,http://edamontology.org/topic_0114|http://edamontology.org/topic_0099,,beta12orEarlier,,,,,,,,,,,,topic_0659,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Non-coding or functional RNA sequences, including regulatory RNA sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA).",,small interfering RNA|Functional RNA|Regulatory RNA|miRNA|microRNA|small nucleolar RNA|Non-coding RNA|ncRNA|siRNA|snoRNA|snRNA|small nuclear RNA|piwi-interacting RNA|piRNA,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0660,rRNA,,One or more ribosomal RNA (rRNA) sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,topic_0660,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0659,,,,,One or more ribosomal RNA (rRNA) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0663,tRNA,,One or more transfer RNA (tRNA) sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,topic_0663,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0659,,,,,One or more transfer RNA (tRNA) sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0694,Protein secondary structure,,"Protein secondary structure or secondary structure alignments.|This includes assignment, analysis, comparison, prediction, rendering etc. of secondary structure data.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0694,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein secondary structure or secondary structure alignments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2814,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/topic_0697,RNA structure,,RNA secondary or tertiary structure and alignments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0697,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0097,,,,,RNA secondary or tertiary structure and alignments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0698,Protein tertiary structure,,Protein tertiary structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0698,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2814,,,,,,,,,,,,,1.8,,,,,,,
http://edamontology.org/topic_0722,Nucleic acid classification,,Classification of nucleic acid sequences and structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0722,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0623,,,,,Classification of nucleic acid sequences and structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0724,Protein families,,"Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0724,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0623,,,,,,,,,,,,,1.14,,,,,,,
http://edamontology.org/topic_0736,Protein folds and structural domains,Transmembrane regions|Protein structural domains|Protein membrane regions|Intramembrane regions|Protein folds|Protein topological domains|Protein domains|Protein transmembrane regions,"Protein tertiary structural domains and folds in a protein or polypeptide chain.|This includes trans- or intra-membrane regions of a protein, typically describing physicochemical properties of the secondary structure elements.  For example, the location and size of the membrane spanning segments and intervening loop regions, transmembrane region IN/OUT orientation relative to the membrane, plus the following data for each amino acid: A Z-coordinate (the distance to the membrane center), the free energy of membrane insertion (calculated in a sliding window over the sequence) and a reliability score. The z-coordinate implies information about re-entrant helices, interfacial helices, the tilt of a transmembrane helix and loop lengths.|This includes topological domains such as cytoplasmic regions in a protein.",FALSE,,,http://edamontology.org/topic_2814,,beta12orEarlier,,,,,,,,,,,,topic_0736,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein tertiary structural domains and folds in a protein or polypeptide chain.,,Transmembrane regions|Protein structural domains|Protein membrane regions|Intramembrane regions|Protein folds|Protein topological domains|Protein domains|Protein transmembrane regions,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0740,Nucleic acid sequence alignment,,Nucleotide sequence alignments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0740,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Nucleotide sequence alignments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0741,Protein sequence alignment,,Protein sequence alignments.|A sequence profile typically represents a sequence alignment.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0741,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,Protein sequence alignments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0747,Nucleic acid sites and features,,"The archival, detection, prediction and analysis of
positional features such as functional sites in nucleotide sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0747,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160|http://edamontology.org/topic_0640,,,,,"The archival, detection, prediction and analysis of
positional features such as functional sites in nucleotide sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0748,Protein sites and features,,"The detection, identification and analysis of positional features in proteins, such as functional sites.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0748,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0639|http://edamontology.org/topic_0160,,,,,"The detection, identification and analysis of positional features in proteins, such as functional sites.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0749,Transcription factors and regulatory sites,Transcription factors|-35 signals|CpG islands|-10 signals|Enhancers|TFBS|Transcriptional regulatory sites|GC signals|Attenuators|CAAT signals|TATA signals|Terminators|Isochores|CAT box|Promoters|Transcription factor binding sites|CCAAT box,"Proteins that bind to DNA and control transcription of DNA to mRNA (transcription factors) and also transcriptional regulatory sites, elements and regions (such as promoters, enhancers, silencers and boundary elements / insulators) in nucleotide sequences.|Transcription factor proteins either promote (as an activator) or block (as a repressor) the binding to DNA of RNA polymerase.  Regulatory sites including transcription factor binding site as well as promoters, enhancers, silencers and boundary elements / insulators.|This includes CpG rich regions (isochores) in a nucleotide sequence.|This includes promoters, CAAT signals, TATA signals, -35 signals, -10 signals, GC signals, primer binding sites for initiation of transcription or reverse transcription, enhancer, attenuator, terminators and ribosome binding sites.",FALSE,,,http://edamontology.org/topic_0203|http://edamontology.org/topic_3125|http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0749,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Proteins that bind to DNA and control transcription of DNA to mRNA (transcription factors) and also transcriptional regulatory sites, elements and regions (such as promoters, enhancers, silencers and boundary elements / insulators) in nucleotide sequences.",,Transcription factors|-35 signals|CpG islands|-10 signals|Enhancers|TFBS|Transcriptional regulatory sites|GC signals|Attenuators|CAAT signals|TATA signals|Terminators|Isochores|CAT box|Promoters|Transcription factor binding sites|CCAAT box,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0751,Phosphorylation sites,,Protein phosphorylation and phosphorylation sites in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0751,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0748|http://edamontology.org/topic_0601,,,,,Protein phosphorylation and phosphorylation sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,,,
http://edamontology.org/topic_0753,Metabolic pathways,,Metabolic pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0753,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Metabolic pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0754,Signaling pathways,,Signaling pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0754,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Signaling pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_0767,Protein and peptide identification,,,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0767,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0121,,,,,,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0769,Workflows,Pipelines,Biological or biomedical analytical workflows or pipelines.,FALSE,,,http://edamontology.org/topic_3071,,beta12orEarlier,,,,,,,,,,,,topic_0769,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Biological or biomedical analytical workflows or pipelines.,Pipelines,,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0770,Data types and objects,,Structuring data into basic types and (computational) objects.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0770,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0091,,,,,Structuring data into basic types and (computational) objects.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.0,,,,,,,
http://edamontology.org/topic_0771,Theoretical biology,,,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,topic_0771,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3307,,,,,,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0779,Mitochondria,,"Mitochondria, typically of mitochondrial genes and proteins.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0779,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2229,,,,,"Mitochondria, typically of mitochondrial genes and proteins.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0780,Plant biology,Plant science|Plants|Plant science|Botany|Plant,"Plants, e.g. information on a specific plant genome including molecular sequences, genes and annotation.|The resource may be specific to a plant, a group of plants or all plants.",FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_0780,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Plant science,,VT 1.5.10 Botany|VT 1.5.22 Plant science,"Plants, e.g. information on a specific plant genome including molecular sequences, genes and annotation.",Plants|Plant science|Botany|Plant,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0781,Virology,,"Study of viruses, e.g. sequence and structural data, interactions of viral proteins, or a viral genome including molecular sequences, genes and annotation.",FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_0781,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.28 ,"Study of viruses, e.g. sequence and structural data, interactions of viral proteins, or a viral genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0782,Fungi,Yeast,"Fungi and molds, e.g. information on a specific fungal genome including molecular sequences, genes and annotation.|The resource may be specific to a fungus, a group of fungi or all fungi.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_0782,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,VT 1.5.21 Mycology,"Fungi and molds, e.g. information on a specific fungal genome including molecular sequences, genes and annotation.",,Yeast,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_2818,,,,,,
http://edamontology.org/topic_0783,Pathogens,,"Pathogens, e.g. information on a specific vertebrate genome including molecular sequences, genes and annotation.|The resource may be specific to a pathogen, a group of pathogens or all pathogens.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).  Definition is wrong anyway.",,,,,,,,,,topic_0783,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Pathogens, e.g. information on a specific vertebrate genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_0621,,,,,,
http://edamontology.org/topic_0786,Arabidopsis,,Arabidopsis-specific data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0786,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0780,,,,,Arabidopsis-specific data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0787,Rice,,Rice-specific data.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0787,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0780,,,,,Rice-specific data.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0796,Genetic mapping and linkage,,"Informatics resources that aim to identify, map or analyse genetic markers in DNA sequences, for example to produce a genetic (linkage) map of a chromosome or genome or to analyse genetic linkage and synteny.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0796,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0102,,,,,"Informatics resources that aim to identify, map or analyse genetic markers in DNA sequences, for example to produce a genetic (linkage) map of a chromosome or genome or to analyse genetic linkage and synteny.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_0797,Comparative genomics,,"The study (typically comparison) of the sequence, structure or function of multiple genomes.",FALSE,,,http://edamontology.org/topic_0622,,beta12orEarlier,,,,,,,,,,,,topic_0797,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study (typically comparison) of the sequence, structure or function of multiple genomes.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0798,Mobile genetic elements,Transposons,"Mobile genetic elements, such as transposons, Plasmids, Bacteriophage elements and Group II introns.",FALSE,,,http://edamontology.org/topic_0114,,beta12orEarlier,,,,,,,,,,,,topic_0798,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mobile genetic elements, such as transposons, Plasmids, Bacteriophage elements and Group II introns.",,Transposons,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_0803,Human disease,,"Human diseases, typically describing the genes, mutations and proteins implicated in disease.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0803,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0634,,,,,"Human diseases, typically describing the genes, mutations and proteins implicated in disease.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_0804,Immunology,Computational immunology|Immunoinformatics,"The application of information technology to immunology such as immunological processes, immunological genes, proteins and peptide ligands, antigens and so on.",FALSE,,,http://edamontology.org/topic_3344,,beta12orEarlier,,,,,,,,,,,,topic_0804,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.3 Immunology,"The application of information technology to immunology such as immunological processes, immunological genes, proteins and peptide ligands, antigens and so on.",,Computational immunology|Immunoinformatics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0820,Membrane and lipoproteins,Membrane proteins|Transmembrane proteins|Lipoproteins,"Lipoproteins (protein-lipid assemblies), and proteins or region of a protein that spans or are associated with a membrane.",FALSE,,,http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0820,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Lipoproteins (protein-lipid assemblies), and proteins or region of a protein that spans or are associated with a membrane.",,Membrane proteins|Transmembrane proteins|Lipoproteins,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0821,Enzymes,Enzymology,"Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed reactions, enzyme nomenclature etc.",FALSE,,,http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_0821,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed reactions, enzyme nomenclature etc.",Enzymology,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_0922,Primers,,PCR primers and hybridisation oligos in a nucleic acid sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_0922,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PCR primers and hybridisation oligos in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0632,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1302,PolyA signal or sites,,Regions or sites in a eukaryotic and eukaryotic viral RNA sequence which directs endonuclease cleavage or polyadenylation of an RNA transcript.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Regions or sites in a eukaryotic and eukaryotic viral RNA sequence which directs endonuclease cleavage or polyadenylation of an RNA transcript.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1304,CpG island and isochores,,CpG rich regions (isochores) in a nucleotide sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CpG rich regions (isochores) in a nucleotide sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1305,Restriction sites,,Restriction enzyme recognition sites (restriction sites) in a nucleic acid sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Restriction enzyme recognition sites (restriction sites) in a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3125,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1307,Splice sites,,Splice sites in a nucleotide sequence or alternative RNA splicing events.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1307,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3320|http://edamontology.org/topic_3512,,,,,Splice sites in a nucleotide sequence or alternative RNA splicing events.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1308,Matrix/scaffold attachment sites,,Matrix/scaffold attachment regions (MARs/SARs) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Matrix/scaffold attachment regions (MARs/SARs) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3125,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1311,Operon,,"Operons (operators, promoters and genes) from a bacterial genome.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1311,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Operons (operators, promoters and genes) from a bacterial genome.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0114,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1312,Promoters,,"Whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in a DNA sequence.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1312,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in a DNA sequence.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0749,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1317,Structural biology,Structure determination|Structural assignment|Structural determination,"The molecular structure of biological molecules, particularly macromolecules such as proteins and nucleic acids.|This includes experimental methods for biomolecular structure determination, such as X-ray crystallography, nuclear magnetic resonance (NMR), circular dichroism (CD) spectroscopy, microscopy etc., including the assignment or modelling of molecular structure from such data.",FALSE,,,http://edamontology.org/topic_3070,,1.3,,,,,,,,,,,,topic_1317,,,,,,,,,,,,,,,,,,,,,,,,,,,"This includes Informatics concerning data generated from the use of microscopes, including optical, electron and scanning probe microscopy.  Includes methods for digitizing microscope images and viewing the produced virtual slides and associated data on a computer screen.",,,,VT 1.5.24 Structural biology,"The molecular structure of biological molecules, particularly macromolecules such as proteins and nucleic acids.",,Structure determination|Structural assignment|Structural determination,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_1456,Protein membrane regions,,"Trans- or intra-membrane regions of a protein, typically describing physicochemical properties of the secondary structure elements.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_1456,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Trans- or intra-membrane regions of a protein, typically describing physicochemical properties of the secondary structure elements.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0736,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1770,Structure comparison,,"The comparison of two or more molecular structures, for example structure alignment and clustering.|This might involve comparison of secondary or tertiary (3D) structural information.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_1770,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The comparison of two or more molecular structures, for example structure alignment and clustering.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0081,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_1775,Function analysis,Functional analysis|Protein function prediction|Protein function analysis,The study of gene and protein function including the prediction of functional properties of a protein.,FALSE,,,http://edamontology.org/topic_3307,,beta12orEarlier,,,,,,,,,,,,topic_1775,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of gene and protein function including the prediction of functional properties of a protein.,Functional analysis,Protein function prediction|Protein function analysis,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_1811,Prokaryotes and Archaea,Bacteriology,"Specific bacteria or archaea, e.g. information on a specific prokaryote genome including molecular sequences, genes and annotation.|The resource may be specific to a prokaryote, a group of prokaryotes or all prokaryotes.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_1811,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,Bacteriology,,VT 1.5.2 Bacteriology,"Specific bacteria or archaea, e.g. information on a specific prokaryote genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_0621,,,,,,
http://edamontology.org/topic_2225,Protein databases,,Protein data resources.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2225,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0078,,,,,Protein data resources.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2226,Structure determination,,"Experimental methods for biomolecular structure determination, such as X-ray crystallography, nuclear magnetic resonance (NMR), circular dichroism (CD) spectroscopy, microscopy etc., including the assignment or modelling of molecular structure from such data.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2226,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_1317,,,,,"Experimental methods for biomolecular structure determination, such as X-ray crystallography, nuclear magnetic resonance (NMR), circular dichroism (CD) spectroscopy, microscopy etc., including the assignment or modelling of molecular structure from such data.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2229,Cell biology,Cellular processes,"Cells, such as key genes and proteins involved in the cell cycle.",FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_2229,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.11 Cell biology,"Cells, such as key genes and proteins involved in the cell cycle.",,Cellular processes,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2230,Classification,,"Topic focused on identifying, grouping, or naming things in a structured way according to some schema based on observable relationships.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2230,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0089,,,,,"Topic focused on identifying, grouping, or naming things in a structured way according to some schema based on observable relationships.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_2232,Lipoproteins,,Lipoproteins (protein-lipid assemblies).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2232,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0820,,,,,Lipoproteins (protein-lipid assemblies).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2257,Phylogeny visualisation,,"Visualise a phylogeny, for example, render a phylogenetic tree.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2257,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0084,,,,,"Visualise a phylogeny, for example, render a phylogenetic tree.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2258,Cheminformatics,Chemoinformatics|Chemical informatics,The application of information technology to chemistry in biological research environment.,FALSE,,,http://edamontology.org/topic_0605,,beta12orEarlier,,,,,,,,,,,,topic_2258,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The application of information technology to chemistry in biological research environment.,Chemoinformatics|Chemical informatics,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2259,Systems biology,Biological system modelling|Biological modelling,The holistic modelling and analysis of complex biological systems and the interactions therein.|This includes databases of models and methods to construct or analyse a model.,FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_2259,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The holistic modelling and analysis of complex biological systems and the interactions therein.,,Biological system modelling|Biological modelling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2269,Statistics and probability,Statistics|Biostatistics|Probability,The application of statistical methods to biological problems.,FALSE,,,http://edamontology.org/topic_3315,,beta12orEarlier,,,,,,,,,,,,topic_2269,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The application of statistical methods to biological problems.,,Statistics|Biostatistics|Probability,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_2271,Structure database search,,"Search for and retrieve molecular structures that are similar to a structure-based query (typically another structure or part of a structure).|The query is a structure-based entity such as another structure, a 3D (structural) motif, 3D profile or template.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2271,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0081,,,,,Search for and retrieve molecular structures that are similar to a structure-based query (typically another structure or part of a structure).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2275,Molecular modelling,Molecular docking|Homology modeling|Comparative modelling|Homology modelling,"The construction, analysis, evaluation, refinement etc. of models of a molecules properties or behaviour, including the modelling the structure of proteins in complex with small molecules or other macromolecules (docking).",FALSE,,,http://edamontology.org/topic_0082,,beta12orEarlier,,,,,,,,,,,,topic_2275,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The construction, analysis, evaluation, refinement etc. of models of a molecules properties or behaviour, including the modelling the structure of proteins in complex with small molecules or other macromolecules (docking).",,Molecular docking|Homology modeling|Comparative modelling|Homology modelling,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2276,Protein function prediction,,The prediction of functional properties of a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2276,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_1775,,,,,The prediction of functional properties of a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/topic_2277,SNP,,"Single nucleotide polymorphisms (SNP) and associated data, for example, the discovery and annotation of SNPs.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2277,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Single nucleotide polymorphisms (SNP) and associated data, for example, the discovery and annotation of SNPs.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2885,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2278,Transmembrane protein prediction,,Predict transmembrane domains and topology in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2278,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0820|http://edamontology.org/topic_0082,,,,,Predict transmembrane domains and topology in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2280,Nucleic acid structure comparison,,The comparison two or more nucleic acid (typically RNA) secondary or tertiary structures.|Use this concept for methods that are exclusively for nucleic acid structures.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2280,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_1770|http://edamontology.org/topic_0097,,,,,The comparison two or more nucleic acid (typically RNA) secondary or tertiary structures.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2397,Exons,,Exons in a nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2397,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Exons in a nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2399,Gene transcription,,Transcription of DNA into RNA including the regulation of transcription.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2399,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Transcription of DNA into RNA including the regulation of transcription.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2533,DNA mutation,,DNA mutation.,FALSE,,,http://edamontology.org/topic_0654|http://edamontology.org/topic_0199,,beta12orEarlier,,,,,,,,,,,,topic_2533,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA mutation.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_2640,Oncology,Cancer biology|Cancer,"The study of cancer, for example, genes and proteins implicated in cancer.",FALSE,,,http://edamontology.org/topic_3303,,beta12orEarlier,,,,,,,,,,,,topic_2640,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.16 Oncology,"The study of cancer, for example, genes and proteins implicated in cancer.",Cancer biology,Cancer,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2661,Toxins and targets,,Structural and associated data for toxic chemical substances.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2661,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Structural and associated data for toxic chemical substances.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0154,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2754,Introns,,Introns in a nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2754,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Introns in a nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2807,Tool topic,,"A topic concerning primarily bioinformatics software tools, typically the broad function or purpose of a tool.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2807,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A topic concerning primarily bioinformatics software tools, typically the broad function or purpose of a tool.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0003,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2809,Study topic,,"A general area of bioinformatics study, typically the broad scope or category of content of a bioinformatics journal or conference proceeding.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2809,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A general area of bioinformatics study, typically the broad scope or category of content of a bioinformatics journal or conference proceeding.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0003,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2811,Nomenclature,,"Biological nomenclature (naming), symbols and terminology.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2811,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0089,,,,,"Biological nomenclature (naming), symbols and terminology.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2813,Disease genes and proteins,,"The genes, gene variations and proteins involved in one or more specific diseases.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2813,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0634,,,,,"The genes, gene variations and proteins involved in one or more specific diseases.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2814,Protein structure analysis,Protein structure,Protein secondary or tertiary structural data and/or associated annotation.,FALSE,,,http://edamontology.org/topic_0081|http://edamontology.org/topic_0078,,beta12orEarlier,,,,,,,,,,,,topic_2814,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3040,,,,Protein secondary or tertiary structural data and/or associated annotation.,Protein structure,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2815,Human biology,Humans,"The study of human beings in general, including the human genome and proteome.",FALSE,,,http://edamontology.org/topic_3070,,beta12orEarlier,,,,,,,,,,,,topic_2815,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of human beings in general, including the human genome and proteome.",Humans,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_2816,Gene resources,,Informatics resource (typically a database) primarily focussed on genes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2816,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3053,,,,,Informatics resource (typically a database) primarily focussed on genes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2817,Yeast,,"Yeast, e.g. information on a specific yeast genome including molecular sequences, genes and annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2817,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Yeast, e.g. information on a specific yeast genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2818,Eukaryotes,,"Eukaryotes or data concerning eukaryotes, e.g. information on a specific eukaryote genome including molecular sequences, genes and annotation.|The resource may be specific to a eukaryote, a group of eukaryotes or all eukaryotes.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison) Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_2818,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Eukaryotes or data concerning eukaryotes, e.g. information on a specific eukaryote genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_0621,,,,,,
http://edamontology.org/topic_2819,Invertebrates,,"Invertebrates, e.g. information on a specific invertebrate genome including molecular sequences, genes and annotation.|The resource may be specific to an invertebrate, a group of invertebrates or all invertebrates.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_2819,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Invertebrates, e.g. information on a specific invertebrate genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_3500,,,,,,
http://edamontology.org/topic_2820,Vertebrates,,"Vertebrates, e.g. information on a specific vertebrate genome including molecular sequences, genes and annotation.|The resource may be specific to a vertebrate, a group of vertebrates or all vertebrates.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_2820,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Vertebrates, e.g. information on a specific vertebrate genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_3500,,,,,,
http://edamontology.org/topic_2821,Unicellular eukaryotes,,"Unicellular eukaryotes, e.g. information on a unicellular eukaryote genome including molecular sequences, genes and annotation.|The resource may be specific to a unicellular eukaryote, a group of unicellular eukaryotes or all unicellular eukaryotes.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,"(jison)Out of EDAM scope.  While very useful to have a basic set of IDs for organisms, should find a better way to provide this e.g. in bio.tools (NCBI taxon ID subset).",,,,,,,,,,topic_2821,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Unicellular eukaryotes, e.g. information on a unicellular eukaryote genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.17,http://edamontology.org/topic_2818,,,,,,
http://edamontology.org/topic_2826,Protein structure alignment,,Protein secondary or tertiary structure alignments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2826,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2814,,,,,Protein secondary or tertiary structure alignments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2828,X-ray diffraction,Crystallography|X-ray microscopy|X-ray crystallography,"The study of matter and their structure by means of the diffraction of X-rays, typically the diffraction pattern caused by the regularly spaced atoms of a crystalline sample.",FALSE,,,http://edamontology.org/topic_3382|http://edamontology.org/topic_1317,,beta12orEarlier,,,,,,,,,,,,topic_2828,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of matter and their structure by means of the diffraction of X-rays, typically the diffraction pattern caused by the regularly spaced atoms of a crystalline sample.",Crystallography,X-ray microscopy|X-ray crystallography,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_2829,"Ontologies, nomenclature and classification",,"Conceptualisation, categorisation and naming of entities or phenomena within biology or bioinformatics.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2829,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0089,,,,,"Conceptualisation, categorisation and naming of entities or phenomena within biology or bioinformatics.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_2830,"Immunoproteins, genes and antigens",Immunogenes|Immunoproteins|Antigens|Immunopeptides,"Immunity-related genes, proteins and their ligands.|This includes T cell receptors (TR), major histocompatibility complex (MHC), immunoglobulin superfamily (IgSF) / antibodies, major histocompatibility complex superfamily (MhcSF), etc.""",FALSE,,,http://edamontology.org/topic_0623|http://edamontology.org/topic_0804,,beta12orEarlier,,,,,,,,,,,,topic_2830,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Immunity-related genes, proteins and their ligands.",,Immunogenes|Immunoproteins|Antigens|Immunopeptides,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_2839,Molecules,CHEBI:23367,"Specific molecules, including large molecules built from repeating subunits (macromolecules) and small molecules of biological significance.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2839,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3047,,,,,"Specific molecules, including large molecules built from repeating subunits (macromolecules) and small molecules of biological significance.",,,CHEBI:23367,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2840,Toxicology,Computational toxicology|Toxicoinformatics,Toxins and the adverse effects of these chemical substances on living organisms.,FALSE,,,http://edamontology.org/topic_3303|http://edamontology.org/topic_3377,,beta12orEarlier,,,,,,,,,,,,topic_2840,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.9 Toxicology,Toxins and the adverse effects of these chemical substances on living organisms.,,Computational toxicology|Toxicoinformatics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2842,High-throughput sequencing,Next-generation sequencing,Parallelised sequencing processes that are capable of sequencing many thousands of sequences simultaneously.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2842,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3168,,,,,Parallelised sequencing processes that are capable of sequencing many thousands of sequences simultaneously.,Next-generation sequencing,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta13,,,,,,,
http://edamontology.org/topic_2844,Structural clustering,,"The comparison and grouping together of molecular structures on the basis of similarity; generate, process or analyse structural clusters.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2844,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The comparison and grouping together of molecular structures on the basis of similarity; generate, process or analyse structural clusters.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0081,,,,,,,,,,,,,1.7,,,,,,,
http://edamontology.org/topic_2846,Gene regulatory networks,,Gene regulatory networks.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2846,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Gene regulatory networks.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2847,Disease (specific),,Informatics resources dedicated to one or more specific diseases (not diseases in general).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2847,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0634,,,,,Informatics resources dedicated to one or more specific diseases (not diseases in general).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,beta12orEarlier,,,,,,,
http://edamontology.org/topic_2867,VNTR,,Variable number of tandem repeat (VNTR) polymorphism in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2867,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Variable number of tandem repeat (VNTR) polymorphism in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2885,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2868,Microsatellites,,Microsatellite polymorphism in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2868,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2868,,,,Microsatellite polymorphism in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2885,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2869,RFLP,,Restriction fragment length polymorphisms (RFLP) in a DNA sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2869,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_2869,,,,Restriction fragment length polymorphisms (RFLP) in a DNA sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_2885,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_2885,DNA polymorphism,Microsatellites|Variable number of tandem repeat polymorphism|snps|RFLP|VNTR|SNP|Single nucleotide polymorphism,"DNA polymorphism.|Includes microsatellite polymorphism in a DNA sequence.  A microsatellite polymorphism is a very short subsequence that is repeated a variable number of times between individuals. These repeats consist of the nucleotides cytosine and adenosine.|Includes restriction fragment length polymorphisms (RFLP) in a DNA sequence.  An RFLP is defined by the presence or absence of a specific restriction site of a bacterial restriction enzyme.|Includes single nucleotide polymorphisms (SNP) and associated data, for example, the discovery and annotation of SNPs.  A SNP is a DNA sequence variation where a single nucleotide differs between members of a species or paired chromosomes in an individual.|Includes variable number of tandem repeat (VNTR) polymorphism in a DNA sequence.  VNTRs occur in non-coding regions of DNA and consists sub-sequence that is repeated a multiple (and varied) number of times.",FALSE,,,http://edamontology.org/topic_0654|http://edamontology.org/topic_0199,,beta12orEarlier,,,,,,,,,,,,topic_2885,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA polymorphism.,,Microsatellites|Variable number of tandem repeat polymorphism|snps|RFLP|VNTR|SNP|Single nucleotide polymorphism,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_2953,Nucleic acid design,,Topic for the design of nucleic acid sequences with specific conformations.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_2953,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0097,,,,,Topic for the design of nucleic acid sequences with specific conformations.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3032,Primer or probe design,,The design of primers for PCR and DNA amplification or the design of molecular probes.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3032,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0632,,,,,The design of primers for PCR and DNA amplification or the design of molecular probes.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3038,Structure databases,,"Molecular secondary or tertiary (3D) structural data resources, typically of proteins and nucleic acids.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3038,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0081,,,,,"Molecular secondary or tertiary (3D) structural data resources, typically of proteins and nucleic acids.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/topic_3039,Nucleic acid structure,,"Nucleic acid (secondary or tertiary) structure, such as whole structures, structural features and associated annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3039,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0097,,,,,"Nucleic acid (secondary or tertiary) structure, such as whole structures, structural features and associated annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/topic_3041,Sequence databases,,"Molecular sequence data resources, including sequence sites, alignments, motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3041,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,"Molecular sequence data resources, including sequence sites, alignments, motifs and profiles.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3042,Nucleic acid sequences,,"Nucleotide sequences and associated concepts such as sequence sites, alignments, motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3042,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,"Nucleotide sequences and associated concepts such as sequence sites, alignments, motifs and profiles.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3043,Protein sequences,,"Protein sequences and associated concepts such as sequence sites, alignments, motifs and profiles.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3043,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein sequences and associated concepts such as sequence sites, alignments, motifs and profiles.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3044,Protein interaction networks,,,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,topic_3044,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0128,,,,,,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3047,Molecular biology,,"The molecular basis of biological activity, particularly the macromolecules (e.g. proteins and nucleic acids) that are essential to life.",FALSE,,,http://edamontology.org/topic_3070,,beta13,,,,,,,,,,,,topic_3047,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.4 Biochemistry and molecular biology,"The molecular basis of biological activity, particularly the macromolecules (e.g. proteins and nucleic acids) that are essential to life.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3048,Mammals,,"Mammals, e.g. information on a specific mammal genome including molecular sequences, genes and annotation.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3048,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0621,,,,,"Mammals, e.g. information on a specific mammal genome including molecular sequences, genes and annotation.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3050,Biodiversity,,"The degree of variation of life forms within a given ecosystem, biome or an entire planet.",FALSE,,,http://edamontology.org/topic_0610,,beta13,,,,,,,,,,,,topic_3050,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.5 Biodiversity conservation,"The degree of variation of life forms within a given ecosystem, biome or an entire planet.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3052,Sequence clusters and classification,,"The comparison, grouping together and classification of macromolecules on the basis of sequence similarity.|This includes the results of sequence clustering, ortholog identification, assignment to families, annotation etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3052,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0080,,,,,"The comparison, grouping together and classification of macromolecules on the basis of sequence similarity.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3053,Genetics,Heredity,"The study of genes, genetic variation and heredity in living organisms.",FALSE,,,http://edamontology.org/topic_3070,,beta13,,,,,,,,,,,,topic_3053,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of genes, genetic variation and heredity in living organisms.",,Heredity,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3055,Quantitative genetics,,The genes and genetic mechanisms such as Mendelian inheritance that underly continuous phenotypic traits (such as height or weight).,FALSE,,,http://edamontology.org/topic_0625,,beta13,,,,,,,,,,,,topic_3055,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The genes and genetic mechanisms such as Mendelian inheritance that underly continuous phenotypic traits (such as height or weight).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3056,Population genetics,,"The distribution of allele frequencies in a population of organisms and its change subject to evolutionary processes including natural selection, genetic drift, mutation and gene flow.",FALSE,,,http://edamontology.org/topic_3053,,beta13,,,,,,,,,,,,topic_3056,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The distribution of allele frequencies in a population of organisms and its change subject to evolutionary processes including natural selection, genetic drift, mutation and gene flow.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3060,Regulatory RNA,,Regulatory RNA sequences including microRNA (miRNA) and small interfering RNA (siRNA).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3060,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Regulatory RNA sequences including microRNA (miRNA) and small interfering RNA (siRNA).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0659,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3061,Documentation and help,,"The documentation of resources such as tools, services and databases and how to get help.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3061,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The documentation of resources such as tools, services and databases and how to get help.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3068,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3062,Genetic organisation,,The structural and functional organisation of genes and other genetic elements.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3062,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0114,,,,,The structural and functional organisation of genes and other genetic elements.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3063,Medical informatics,Molecular medicine|Translational medicine|Biomedical informatics|Clinical informatics|Health informatics|Healthcare informatics|Health and disease,"The application of information technology to health, disease and biomedicine.",FALSE,,,http://edamontology.org/topic_0605,,beta13,,,,,,,,,,,,topic_3063,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Molecular medicine|Translational medicine,,,"The application of information technology to health, disease and biomedicine.",Biomedical informatics|Clinical informatics|Health informatics|Healthcare informatics|Health and disease,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3064,Developmental biology,,How organisms grow and develop.,FALSE,,,http://edamontology.org/topic_3070,,beta13,,,,,,,,,,,,topic_3064,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.14 Developmental biology,How organisms grow and develop.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3065,Embryology,,The development of organisms between the one-cell stage (typically the zygote) and the end of the embryonic stage.,FALSE,,,http://edamontology.org/topic_3064,,beta13,,,,,,,,,,,,topic_3065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The development of organisms between the one-cell stage (typically the zygote) and the end of the embryonic stage.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3067,Anatomy,,The form and function of the structures of living organisms.,FALSE,,,http://edamontology.org/topic_3344,,beta13,,,,,,,,,,,,topic_3067,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.1 Anatomy and morphology,The form and function of the structures of living organisms.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3068,Literature and language,References|Citations|Documentation|Scientific literature|Bibliography,"The scientific literature, language processing, reference information, and documentation.|This includes the documentation of resources such as tools, services and databases, user support, how to get help etc.",FALSE,,,http://edamontology.org/topic_0003,,beta13,,,,,,,,,,,,topic_3068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The scientific literature, language processing, reference information, and documentation.",,References|Citations|Documentation|Scientific literature|Bibliography,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3070,Biology,Biological science|Cryobiology|Aerobiology|Chronobiology|Biological rhythms|Reproductive biology|Behavioural biology,"A particular biological science, especially observable traits such as aspects of biochemistry, physiology, morphology, anatomy, development and so on.",FALSE,,,http://edamontology.org/topic_0003,,beta13,,,,,,,,,,,,topic_3070,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"VT 1.5.13 Cryobiology
|VT 1.5.8 Biology|VT 1.5.1 Aerobiology|VT 1.5.23 Reproductive biology|VT 1.5.99 Other|VT 1.5 Biological sciences|VT 1.5.3 Behavioural biology|VT 1.5.7 Biological rhythm","A particular biological science, especially observable traits such as aspects of biochemistry, physiology, morphology, anatomy, development and so on.",Biological science,Cryobiology|Aerobiology|Chronobiology|Biological rhythms|Reproductive biology|Behavioural biology,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3071,Data management,,"The development and use of architectures, policies, practices and procedures for management of data.",FALSE,,,http://edamontology.org/topic_0605,,beta13,,,,,,,,,,,,topic_3071,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.3.1 Data management,"The development and use of architectures, policies, practices and procedures for management of data.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3072,Sequence feature detection,,"The detection of the positional features, such as functional and other key sites, in molecular sequences.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3072,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160,,,,,"The detection of the positional features, such as functional and other key sites, in molecular sequences.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3073,Nucleic acid feature detection,,The detection of positional features such as functional sites in nucleotide sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3073,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3511,,,,,The detection of positional features such as functional sites in nucleotide sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3074,Protein feature detection,,"The detection, identification and analysis of positional protein sequence features, such as functional sites.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3074,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0160,,,,,"The detection, identification and analysis of positional protein sequence features, such as functional sites.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3075,Biological system modelling,,Topic for modelling biological systems in mathematical terms.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3075,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_2259,,,,,Topic for modelling biological systems in mathematical terms.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.2,,,,,,,
http://edamontology.org/topic_3077,Data acquisition,,"The acquisition of data, typically measurements of physical systems using any type of sampling system, or by another other means.",FALSE,,,http://edamontology.org/topic_3071,,beta13,,,,,,,,,,,,topic_3077,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The acquisition of data, typically measurements of physical systems using any type of sampling system, or by another other means.",,,,,http://purl.obolibrary.org/obo/edam#data|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3078,Genes and proteins resources,,Specific genes and/or their encoded proteins or a family or other grouping of related genes and proteins.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3078,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0623,,,,,Specific genes and/or their encoded proteins or a family or other grouping of related genes and proteins.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3118,Protein topological domains,,Topological domains such as cytoplasmic regions in a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3118,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Topological domains such as cytoplasmic regions in a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0736,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3120,Protein variants,,"Protein sequence variants produced e.g. from alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting.",FALSE,,,http://edamontology.org/topic_0108,,beta13,,,,,,,,,,,,topic_3120,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3120,,,,"Protein sequence variants produced e.g. from alternative splicing, alternative promoter usage, alternative initiation and ribosomal frameshifting.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3123,Expression signals,,Regions within a nucleic acid sequence containing a signal that alters a biological function.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3123,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0749,,,,,Regions within a nucleic acid sequence containing a signal that alters a biological function.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_3125,DNA binding sites,Matrix/scaffold attachment region|Restriction sites|Matrix-attachment region|Scaffold-attachment region|Nucleosome exclusion sequences|Ribosome binding sites,"Nucleic acids binding to some other molecule.|This includes sites involved with DNA replication and recombination.  This includes binding sites for initiation of replication (origin of replication), regions where transfer is initiated during the conjugation or mobilisation (origin of transfer), starting sites for DNA duplication (origin of replication) and regions which are eliminated through any of kind of recombination.  Also nucleosome exclusion regions, i.e. specific patterns or regions which exclude nucleosomes (the basic structural units of eukaryotic chromatin which play a significant role in regulating gene expression).|This includes ribosome binding sites (Shine-Dalgarno sequence in prokaryotes), restriction enzyme recognition sites (restriction sites) etc.",FALSE,,,http://edamontology.org/topic_3511|http://edamontology.org/topic_0654,,beta13,,,,,,,,,,,,topic_3125,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/data_3125,,,,Nucleic acids binding to some other molecule.,,Matrix/scaffold attachment region|Restriction sites|Matrix-attachment region|Scaffold-attachment region|Nucleosome exclusion sequences|Ribosome binding sites,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3126,Nucleic acid repeats,,Repetitive elements within a nucleic acid sequence.|This includes long terminal repeats (LTRs); sequences (typically retroviral) directly repeated at  both ends of a defined sequence and other types of repeating unit.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3126,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Repetitive elements within a nucleic acid sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0157,,,,,,,,,,,,,"1,13",,,,,,,
http://edamontology.org/topic_3127,DNA replication and recombination,,DNA replication or recombination.,FALSE,,,http://edamontology.org/topic_0654,,beta13,,,,,,,,,,,,topic_3127,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,DNA replication or recombination.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3135,Signal or transit peptide,,Coding sequences for a signal or transit peptide.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3135,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Coding sequences for a signal or transit peptide.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3512,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3139,Sequence tagged sites,,Sequence tagged sites (STS) in nucleic acid sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta13,,,,,,,,,,,,topic_3139,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sequence tagged sites (STS) in nucleic acid sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3511,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3168,Sequencing,DNA-Seq|Next gen sequencing|Next generation sequencing|Primer walking|DNase-Seq|Clone verification|Small RNA sequencing|High-throughput sequencing|Amplicon sequencing|Chromosome walking|High throughput sequencing|NGS|Resequencing,"The determination of complete (typically nucleotide) sequences, including those of genomes (full genome sequencing, de novo sequencing and resequencing), amplicons and transcriptomes.|Amplicon sequencing is the ultra-deep sequencing of PCR products (amplicons), usually for the purpose of efficient genetic variant identification and characterisation in specific genomic regions. ",FALSE,,,http://edamontology.org/topic_3361,,1.1,,,,,,,,,,,,topic_3168,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The determination of complete (typically nucleotide) sequences, including those of genomes (full genome sequencing, de novo sequencing and resequencing), amplicons and transcriptomes.",DNA-Seq,Next gen sequencing|Next generation sequencing|Primer walking|DNase-Seq|Clone verification|Small RNA sequencing|High-throughput sequencing|Amplicon sequencing|Chromosome walking|High throughput sequencing|NGS|Resequencing,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3169,ChIP-seq,Chip sequencing|Chip-sequencing|Chip Seq|ChIP-exo,The analysis of protein-DNA interactions where chromatin immunoprecipitation (ChIP) is used in combination with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.,FALSE,,,http://edamontology.org/topic_3168|http://edamontology.org/topic_3656,,1.1,,,,,,,,,,,,topic_3169,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The analysis of protein-DNA interactions where chromatin immunoprecipitation (ChIP) is used in combination with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.,Chip sequencing|Chip-sequencing|Chip Seq,ChIP-exo,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3170,RNA-Seq,RNA sequencing|Small RNA-Seq|WTSS|Whole transcriptome shotgun sequencing|Small RNA-seq|RNA-seq|MicroRNA sequencing|miRNA-seq,"A topic concerning high-throughput sequencing of cDNA to measure the RNA content (transcriptome) of a sample, for example, to investigate how different alleles of a gene are expressed, detect post-transcriptional mutations or identify gene fusions.|This includes small RNA profiling (small RNA-Seq), for example to find novel small RNAs, characterize mutations and analyze expression of small RNAs.",FALSE,,,http://edamontology.org/topic_3168,,1.1,,,,,,,,,,,,topic_3170,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A topic concerning high-throughput sequencing of cDNA to measure the RNA content (transcriptome) of a sample, for example, to investigate how different alleles of a gene are expressed, detect post-transcriptional mutations or identify gene fusions.",RNA sequencing|Small RNA-Seq|WTSS|Whole transcriptome shotgun sequencing|Small RNA-seq|RNA-seq,MicroRNA sequencing|miRNA-seq,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3171,DNA methylation,,"DNA methylation including bisulfite sequencing, methylation sites and analysis, for example of patterns and profiles of DNA methylation in a population, tissue etc.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,topic_3171,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"DNA methylation including bisulfite sequencing, methylation sites and analysis, for example of patterns and profiles of DNA methylation in a population, tissue etc.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3295,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3172,Metabolomics,,"The systematic study of metabolites, the chemical processes they are involved, and the chemical fingerprints of specific cellular processes in a whole cell, tissue, organ or organism.",FALSE,,,http://edamontology.org/topic_3391,,1.1,,,,,,,,,,,,topic_3172,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The systematic study of metabolites, the chemical processes they are involved, and the chemical fingerprints of specific cellular processes in a whole cell, tissue, organ or organism.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3173,Epigenomics,,"The study of the epigenetic modifications of a whole cell, tissue, organism etc.|Epigenetics concerns the heritable changes in gene expression owing to mechanisms other than DNA sequence variation.",FALSE,,,http://edamontology.org/topic_0622|http://edamontology.org/topic_3295,,1.1,,,,,,,,,,,,topic_3173,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of the epigenetic modifications of a whole cell, tissue, organism etc.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3174,Metagenomics,Community genomics|Ecogenomics|Environmental genomics|Environmental omics|Environmental sequencing|Biome sequencing|Shotgun metagenomics,"The study of genetic material recovered from environmental samples, and associated environmental data.",FALSE,,,http://edamontology.org/topic_0610|http://edamontology.org/topic_0622,,1.1,,,,,,,,,,,,topic_3174,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Community genomics|Ecogenomics|Environmental genomics|Environmental omics,,,"The study of genetic material recovered from environmental samples, and associated environmental data.",,Environmental sequencing|Biome sequencing|Shotgun metagenomics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3175,DNA structural variation,Genomic structural variation|Structural variation,"Variation in chromosome structure including microscopic and submicroscopic types of variation such as deletions, duplications, copy-number variants, insertions, inversions and translocations.",FALSE,,,http://edamontology.org/topic_0654|http://edamontology.org/topic_0199,,1.1,,,,,,,,,,,,topic_3175,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Variation in chromosome structure including microscopic and submicroscopic types of variation such as deletions, duplications, copy-number variants, insertions, inversions and translocations.",Genomic structural variation|Structural variation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3176,DNA packaging,Nucleosome positioning,"DNA-histone complexes (chromatin), organisation of chromatin into nucleosomes and packaging into higher-order structures.",FALSE,,,http://edamontology.org/topic_0654,,beta12orEarlier,,,,,,,,,,,,topic_3176,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"DNA-histone complexes (chromatin), organisation of chromatin into nucleosomes and packaging into higher-order structures.",,Nucleosome positioning,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3177,DNA-Seq,,"A topic concerning high-throughput sequencing of randomly fragmented genomic DNA, for example, to investigate whole-genome sequencing and resequencing, SNP discovery, identification of copy number variations and chromosomal rearrangements.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.1,,,,,,,,,,,,topic_3177,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3168,,,,,"A topic concerning high-throughput sequencing of randomly fragmented genomic DNA, for example, to investigate whole-genome sequencing and resequencing, SNP discovery, identification of copy number variations and chromosomal rearrangements.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3178,RNA-Seq alignment,,"The alignment of sequences of (typically millions) of short reads to a reference genome.  This is a specialised topic within sequence alignment, especially because of complications arising from RNA splicing.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,beta12orEarlier,,,,,,,,,,,,topic_3178,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_0196,,,,,"The alignment of sequences of (typically millions) of short reads to a reference genome.  This is a specialised topic within sequence alignment, especially because of complications arising from RNA splicing.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.3,,,,,,,
http://edamontology.org/topic_3179,ChIP-on-chip,ChIP-Chip|ChIP-chip|ChiP,Experimental techniques that combine chromatin immunoprecipitation ('ChIP') with microarray ('chip'). ChIP-on-chip is used for high-throughput study protein-DNA interactions.,FALSE,,,http://edamontology.org/topic_3656,,1.1,,,,,,,,,,,,topic_3179,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Experimental techniques that combine chromatin immunoprecipitation ('ChIP') with microarray ('chip'). ChIP-on-chip is used for high-throughput study protein-DNA interactions.,ChIP-Chip|ChIP-chip,ChiP,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3263,Data security,Data privacy,"The protection of data, such as patient health data, from damage or unwanted access from unauthorised users.",FALSE,,,http://edamontology.org/topic_3071,,1.3,,,,,,,,,,,,topic_3263,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The protection of data, such as patient health data, from damage or unwanted access from unauthorised users.",Data privacy,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3277,Sample collections,Specimen collections|biosamples|samples,Biological samples and specimens.,FALSE,,,http://edamontology.org/topic_3344,,1.3,,,,,,,,,,,,topic_3277,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Biological samples and specimens.,Specimen collections,biosamples|samples,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3292,Biochemistry,Biological chemistry,Chemical substances and physico-chemical processes and that occur within living organisms.,FALSE,,,http://edamontology.org/topic_3070|http://edamontology.org/topic_3314,,1.3,,,,,,,,,,,,topic_3292,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.4 Biochemistry and molecular biology,Chemical substances and physico-chemical processes and that occur within living organisms.,Biological chemistry,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3293,Phylogenetics,,The study of evolutionary relationships amongst organisms from analysis of genetic information (typically gene or protein sequences).,FALSE,,,http://edamontology.org/topic_0084|http://edamontology.org/topic_0080,,1.3,,,,,,,,,,,,topic_3293,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of evolutionary relationships amongst organisms from analysis of genetic information (typically gene or protein sequences).,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3295,Epigenetics,DNA methylation|Histone modification,"Topic concerning the study of heritable changes, for example in gene expression or phenotype, caused by mechanisms other than changes in the DNA sequence.|This includes sub-topics such as histone modification and DNA methylation (methylation sites and analysis, for example of patterns and profiles of DNA methylation in a population, tissue etc.)",FALSE,,,http://edamontology.org/topic_3053,,1.3,,,,,,,,,,,,topic_3295,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Topic concerning the study of heritable changes, for example in gene expression or phenotype, caused by mechanisms other than changes in the DNA sequence.",,DNA methylation|Histone modification,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3297,Biotechnology,,"The exploitation of biological process, structure and function for industrial purposes, for example the genetic manipulation of microorganisms for the antibody production.",FALSE,,,http://edamontology.org/topic_3070,,1.3,,,,,,,,,,,,topic_3297,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The exploitation of biological process, structure and function for industrial purposes, for example the genetic manipulation of microorganisms for the antibody production.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3298,Phenomics,,"Phenomes, or the study of the change in phenotype (the physical and biochemical traits of organisms) in response to genetic and environmental factors. ",FALSE,,,http://edamontology.org/topic_3299|http://edamontology.org/topic_3391|http://edamontology.org/topic_0625,,1.3,,,,,,,,,,,,topic_3298,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Phenomes, or the study of the change in phenotype (the physical and biochemical traits of organisms) in response to genetic and environmental factors. ",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3299,Evolutionary biology,,"The evolutionary processes, from the genetic to environmental scale, that produced life in all its diversity.",FALSE,,,http://edamontology.org/topic_3070,,1.3,,,,,,,,,,,,topic_3299,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.16 Evolutionary biology,"The evolutionary processes, from the genetic to environmental scale, that produced life in all its diversity.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3300,Physiology,,The functions of living organisms and their constituent parts.,FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3300,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.8 Physiology,The functions of living organisms and their constituent parts.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3301,Microbiology,Antimicrobial stewardship|Microbiological surveillance|Microbial surveillance,The biology of microorganisms.,FALSE,,,http://edamontology.org/topic_3070,,1.3,,,,,,,,,,,,topic_3301,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.20 Microbiology,The biology of microorganisms.,,Antimicrobial stewardship|Microbiological surveillance|Microbial surveillance,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3302,Parasitology,,The biology of parasites.,FALSE,,,http://edamontology.org/topic_3344,,1.3,,,,,,,,,,,,topic_3302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The biology of parasites.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3303,Medicine,Biomedical research|Experimental medicine|Clinical medicine|Internal medicine|General medicine,"Research in support of healing by diagnosis, treatment, and prevention of disease.",FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3303,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.9 General and internal medicine|VT 3.2 Clinical medicine|VT 3.1 Basic medicine,"Research in support of healing by diagnosis, treatment, and prevention of disease.",Biomedical research|Experimental medicine|Clinical medicine,Internal medicine|General medicine,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3304,Neurobiology,Neuroscience,"The study of the nervous system and brain; its anatomy, physiology and function.",FALSE,,,http://edamontology.org/topic_3344,,1.3,,,,,,,,,,,,topic_3304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Neuroscience,,VT 3.1.5 Neuroscience,"The study of the nervous system and brain; its anatomy, physiology and function.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3305,Public health and epidemiology,Public health|Epidemiology,"Topic concerning the the patterns, cause, and effect of disease within populations.",FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.3.1 Epidemiology,"Topic concerning the the patterns, cause, and effect of disease within populations.",,Public health|Epidemiology,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3306,Biophysics,,The use of physics to study biological system.,FALSE,,,http://edamontology.org/topic_3070|http://edamontology.org/topic_3318,,1.3,,,,,,,,,,,,topic_3306,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.9 Biophysics,The use of physics to study biological system.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3307,Computational biology,Mathematical biology|Biomathematics|Theoretical biology,"The development and application of theory, analytical methods, mathematical models and computational simulation of biological systems.|This includes the modeling and treatment of biological processes and systems in mathematical terms (theoretical biology).",FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3307,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.19 Mathematical biology|VT 1.5.12 Computational biology|VT 1.5.26 Theoretical biology,"The development and application of theory, analytical methods, mathematical models and computational simulation of biological systems.",,Mathematical biology|Biomathematics|Theoretical biology,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3308,Transcriptomics,Transcriptome|Metatranscriptomics|Comparative transcriptomics,"The analysis of transcriptomes, or a set of all the RNA molecules in a specific cell, tissue etc.",FALSE,,,http://edamontology.org/topic_0203|http://edamontology.org/topic_0622,,1.3,,,,,,,,,,,,topic_3308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The analysis of transcriptomes, or a set of all the RNA molecules in a specific cell, tissue etc.",,Transcriptome|Metatranscriptomics|Comparative transcriptomics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3314,Chemistry,VT 1.7.10 Polymer science|Polymer science|Chemical science|Nuclear chemistry|Physical chemistry|Inorganic chemistry|Organic chemistry|Mathematical chemistry,"The composition and properties of matter, reactions, and the use of reactions to create new substances.",FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3314,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.7.10 Polymer science|Polymer science|Chemical science,,VT 1.7.6 Inorganic and nuclear chemistry|VT 1.7.9 Physical chemistry|VT 1.7.2 Chemistry|VT 1.7.5 Electrochemistry|VT 1.7.3 Colloid chemistry|VT 1.7.7 Mathematical chemistry|VT 1.7 Chemical sciences|VT 1.7.8 Organic chemistry,"The composition and properties of matter, reactions, and the use of reactions to create new substances.",,Nuclear chemistry|Physical chemistry|Inorganic chemistry|Organic chemistry|Mathematical chemistry,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3315,Mathematics,Maths,"The study of numbers (quantity) and other topics including structure, space, and change.",FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3315,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT:1.1 Mathematics|VT 1.1.99 Other,"The study of numbers (quantity) and other topics including structure, space, and change.",Maths,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3316,Computer science,,The theory and practical use of computer systems.,FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3316,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.2.99 Other|VT 1.2 Computer sciences,The theory and practical use of computer systems.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3318,Physics,,"The study of matter, space and time, and related concepts such as energy and force.",FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3318,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of matter, space and time, and related concepts such as energy and force.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3320,RNA splicing,Alternative splicing|Splice sites,"RNA splicing; post-transcription RNA modification involving the removal of introns and joining of exons.|This includes the study of splice sites, splicing patterns, alternative splicing events and variants, isoforms, etc..",FALSE,,,http://edamontology.org/topic_0203|http://edamontology.org/topic_0099,,1.3,,,,,,,,,,,,topic_3320,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA splicing; post-transcription RNA modification involving the removal of introns and joining of exons.,Alternative splicing,Splice sites,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3321,Molecular genetics,,The structure and function of genes at a molecular level.,FALSE,,,http://edamontology.org/topic_3307|http://edamontology.org/topic_3053,,1.3,,,,,,,,,,,,topic_3321,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The structure and function of genes at a molecular level.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3322,Respiratory medicine,Pulmonary medicine|Pulmonology|Pulmonary disorders|Respiratory disease,The study of respiratory system.,FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3322,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.25 Respiratory systems,The study of respiratory system.,Pulmonary medicine|Pulmonology,Pulmonary disorders|Respiratory disease,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3323,Metabolic disease,,The study of metabolic diseases.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.3,,,,,,,,,,,,topic_3323,,,,,,,,,,,,,,,,,,,,,,,,,,,http://edamontology.org/topic_3407,,,,,The study of metabolic diseases.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,,,,,,,,,,,,,,1.4,,,,,,,
http://edamontology.org/topic_3324,Infectious disease,Communicable disease|Transmissable disease,"The branch of medicine that deals with the prevention, diagnosis and management of transmissable disease with clinically evident illness resulting from infection with pathogenic biological agents (viruses, bacteria, fungi, protozoa, parasites and prions).",FALSE,,,http://edamontology.org/topic_0634,,1.3,,,,,,,,,,,,topic_3324,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.3.4 Infectious diseases,"The branch of medicine that deals with the prevention, diagnosis and management of transmissable disease with clinically evident illness resulting from infection with pathogenic biological agents (viruses, bacteria, fungi, protozoa, parasites and prions).",Communicable disease|Transmissable disease,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3325,Rare diseases,,The study of rare diseases.,FALSE,,,http://edamontology.org/topic_0634,,1.3,,,,,,,,,,,,topic_3325,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of rare diseases.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3332,Computational chemistry,,,FALSE,,,http://edamontology.org/topic_3316|http://edamontology.org/topic_3314,,1.3,,,,,,,,,,,,topic_3332,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Topic concerning the development and application of theory, analytical methods, mathematical models and computational simulation of chemical systems.|VT 1.7.4 Computational chemistry",,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3334,Neurology,Neurological disorders,"The branch of medicine that deals with the anatomy, functions and disorders of the nervous system.",FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3334,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The branch of medicine that deals with the anatomy, functions and disorders of the nervous system.",,Neurological disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3335,Cardiology,Cardiovascular medicine|Heart disease|Cardiovascular disease,The diseases and abnormalities of the heart and circulatory system.,FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3335,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.4 Cardiac and Cardiovascular systems|VT 3.2.22 Peripheral vascular disease,The diseases and abnormalities of the heart and circulatory system.,Cardiovascular medicine,Heart disease|Cardiovascular disease,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3336,Drug discovery,,"The discovery and design of drugs or potential drug compounds.|This includes methods that search compound collections, generate or analyse drug 3D conformations, identify drug targets with structural docking etc.",FALSE,,,http://edamontology.org/topic_3376|http://edamontology.org/topic_3314,,1.3,,,,,,,,,,,,topic_3336,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The discovery and design of drugs or potential drug compounds.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3337,Biobank,biobanking|Tissue collection,"Repositories of biological samples, typically human, for basic biological and clinical research.",FALSE,,,http://edamontology.org/topic_3277,,1.3,,,,,,,,,,,,topic_3337,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Repositories of biological samples, typically human, for basic biological and clinical research.",biobanking|Tissue collection,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3338,Mouse clinic,,"Laboratory study of mice, for example, phenotyping, and mutagenesis of mouse cell lines.",FALSE,,,http://edamontology.org/topic_3277,,1.3,,,,,,,,,,,,topic_3338,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Laboratory study of mice, for example, phenotyping, and mutagenesis of mouse cell lines.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3339,Microbial collection,,"Collections of microbial cells including bacteria, yeasts and moulds.",FALSE,,,http://edamontology.org/topic_3277,,1.3,,,,,,,,,,,,topic_3339,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Collections of microbial cells including bacteria, yeasts and moulds.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3340,Cell culture collection,,"Collections of cells grown under laboratory conditions, specifically, cells from multi-cellular eukaryotes and especially animal cells.",FALSE,,,http://edamontology.org/topic_3277,,1.3,,,,,,,,,,,,topic_3340,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Collections of cells grown under laboratory conditions, specifically, cells from multi-cellular eukaryotes and especially animal cells.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3341,Clone library,,"Collections of DNA, including both collections of cloned molecules, and populations of micro-organisms that store and propagate cloned DNA.",FALSE,,,http://edamontology.org/topic_3277,,1.3,,,,,,,,,,,,topic_3341,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Collections of DNA, including both collections of cloned molecules, and populations of micro-organisms that store and propagate cloned DNA.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3342,Translational medicine,,"'translating' the output of basic and biomedical research into better diagnostic tools, medicines, medical procedures, policies and advice.",FALSE,,,http://edamontology.org/topic_3303,,1.3,,,,,,,,,,,,topic_3342,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"'translating' the output of basic and biomedical research into better diagnostic tools, medicines, medical procedures, policies and advice.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3343,Compound libraries and screening,Chemical screening|Compound library|Chemical library|Target identification and validation,"Collections of chemicals, typically for use in high-throughput screening experiments.",FALSE,,,http://edamontology.org/topic_3336,,1.3,,,,,,,,,,,,topic_3343,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Collections of chemicals, typically for use in high-throughput screening experiments.",,Chemical screening|Compound library|Chemical library|Target identification and validation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3344,Biomedical science,Biomedical sciences|Health science,Topic concerning biological science that is (typically) performed in the context of medicine.,FALSE,,,http://edamontology.org/topic_0003,,1.3,,,,,,,,,,,,topic_3344,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.3 Health sciences,Topic concerning biological science that is (typically) performed in the context of medicine.,Biomedical sciences|Health science,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3345,Data identity and mapping,,"Topic concerning the identity of biological entities, or reports on such entities, and the mapping of entities and records in different databases.",FALSE,,,http://edamontology.org/topic_3071,,1.3,,,,,,,,,,,,topic_3345,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Topic concerning the identity of biological entities, or reports on such entities, and the mapping of entities and records in different databases.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3346,Sequence search,Sequence database search,The search and retrieval from a database on the basis of molecular sequence similarity.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.3,,,,,,,,,,,,topic_3346,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The search and retrieval from a database on the basis of molecular sequence similarity.,Sequence database search,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0080,,,,,,,,,,,,,1.12,,,,,,,
http://edamontology.org/topic_3360,Biomarkers,Diagnostic markers,"Objective indicators of biological state often used to assess health, and determinate treatment.",FALSE,,,http://edamontology.org/topic_3070,,1.4,,,,,,,,,,,,topic_3360,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Objective indicators of biological state often used to assess health, and determinate treatment.",Diagnostic markers,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3361,Laboratory techniques,Lab techniques,The procedures used to conduct an experiment.,FALSE,,,http://edamontology.org/topic_0003,,1.4,,,,,,,,,,,,topic_3361,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The procedures used to conduct an experiment.,Lab techniques,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3365,"Data architecture, analysis and design",Data design|Data architecture|Data analysis,"The development of policies, models and standards that cover data acquisition, storage and integration, such that it can be put to use, typically through a process of systematically applying statistical and / or logical techniques to describe, illustrate, summarise or evaluate data.",FALSE,,,http://edamontology.org/topic_3071,,1.4,,,,,,,,,,,,topic_3365,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The development of policies, models and standards that cover data acquisition, storage and integration, such that it can be put to use, typically through a process of systematically applying statistical and / or logical techniques to describe, illustrate, summarise or evaluate data.",,Data design|Data architecture|Data analysis,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3366,Data integration and warehousing,Data integration|Data warehousing,"The combination and integration of data from different sources, for example into a central repository or warehouse, to provide users with a unified view of these data.

",FALSE,,,http://edamontology.org/topic_3071,,1.4,,,,,,,,,,,,topic_3366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The combination and integration of data from different sources, for example into a central repository or warehouse, to provide users with a unified view of these data.

",,Data integration|Data warehousing,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3368,Biomaterials,,"Any matter, surface or construct that interacts with a biological system.",FALSE,,,http://edamontology.org/topic_3297,,1.4,,,,,,,,,,,,topic_3368,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Any matter, surface or construct that interacts with a biological system.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3369,Chemical biology,,The use of synthetic chemistry to study and manipulate biological systems.,FALSE,,,http://edamontology.org/topic_3371|http://edamontology.org/topic_3070,,1.4,,,,,,,,,,,,topic_3369,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The use of synthetic chemistry to study and manipulate biological systems.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3370,Analytical chemistry,,"The study of the separation, identification, and quantification of the chemical components of natural and artificial materials.",FALSE,,,http://edamontology.org/topic_3314,,1.4,,,,,,,,,,,,topic_3370,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.7.1 Analytical chemistry,"The study of the separation, identification, and quantification of the chemical components of natural and artificial materials.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3371,Synthetic chemistry,Synthetic organic chemistry,The use of chemistry to create new compounds.,FALSE,,,http://edamontology.org/topic_3314,,1.4,,,,,,,,,,,,topic_3371,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The use of chemistry to create new compounds.,Synthetic organic chemistry,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3372,Software engineering,Computer programming|Software development|Data structures| Programming languages|Algorithms,The process that leads from an original formulation of a computing problem to executable programs.,FALSE,,,http://edamontology.org/topic_3316,,1.4,,,,,,,,,,,,topic_3372,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.2.14 Software engineering|Software engineering|VT 1.2.7 Data structures|1.2.12 Programming languages|VT 1.2.1 Algorithms,The process that leads from an original formulation of a computing problem to executable programs.,Computer programming|Software development,Data structures| Programming languages|Algorithms,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3373,Drug development,Drug development science|Medicines development|Medicine development,The process of bringing a new drug to market once a lead compounds has been identified through drug discovery.,FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3373,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The process of bringing a new drug to market once a lead compounds has been identified through drug discovery.,Drug development science|Medicines development|Medicine development,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3374,Biotherapeutics,Drug formulation and delivery|Drug delivery|Drug formulation,The process of formulating abd administering a pharmaceutical compound to achieve a therapeutic effect.,FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3374,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Drug formulation and delivery|Drug delivery|Drug formulation,,,The process of formulating abd administering a pharmaceutical compound to achieve a therapeutic effect.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3375,Drug metabolism,Pharmacodynamics|ADME|Pharmacokinetics and pharmacodynamics|Drug distribution|Pharmacokinetics|Drug absorption|Drug excretion,The study of how a drug interacts with the body.,FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3375,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of how a drug interacts with the body.,,Pharmacodynamics|ADME|Pharmacokinetics and pharmacodynamics|Drug distribution|Pharmacokinetics|Drug absorption|Drug excretion,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3376,Medicines research and development,Health care science|Health care research|Drug discovery and development,"The discovery, development and approval of medicines.",FALSE,,,http://edamontology.org/topic_3344,,1.4,,,,,,,,,,,,topic_3376,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Health care science|Health care research,,,"The discovery, development and approval of medicines.",Drug discovery and development,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3377,Safety sciences,Drug safety,The safety (or lack) of drugs and other medical interventions.,FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3377,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The safety (or lack) of drugs and other medical interventions.,,Drug safety,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3378,Pharmacovigilence,,"The detection, assesment, understanding and prevention of adverse effects of medicines.|Pharmacovigilence concerns safety once a drug has gone to market.",FALSE,,,http://edamontology.org/topic_3377,,1.4,,,,,,,,,,,,topic_3378,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The detection, assesment, understanding and prevention of adverse effects of medicines.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3379,Preclinical and clinical studies,Preclinical studies|Clinical studies|Drug trials|Clinical study|Preclinical study,"The testing of new medicines, vaccines or procedures on animals (preclinical) and humans (clinical) prior to their approval by regulatory authorities.",FALSE,,,http://edamontology.org/topic_3376|http://edamontology.org/topic_3678,,1.4,,,,,,,,,,,,topic_3379,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The testing of new medicines, vaccines or procedures on animals (preclinical) and humans (clinical) prior to their approval by regulatory authorities.",,Preclinical studies|Clinical studies|Drug trials|Clinical study|Preclinical study,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3382,Imaging,Microscopy imaging|Diffraction experiment|Microscopy,"The visual representation of an object.|This includes diffraction experiments that are based upon the interference of waves, typically electromagnetic waves such as  X-rays or visible light, by some object being studied, typical in order to produce an image of the object or determine its structure.",FALSE,,,http://edamontology.org/topic_3361,,1.4,,,,,,,,,,,,topic_3382,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The visual representation of an object.,,Microscopy imaging|Diffraction experiment|Microscopy,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3383,Biological imaging,,The use of imaging techniques to understand biology.,FALSE,,,http://edamontology.org/topic_3382,,1.4,,,,,,,,,,,,topic_3383,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The use of imaging techniques to understand biology.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3384,Medical imaging,Radiology|Nuclear medicine,The use of imaging techniques for clinical purposes for medical research.,FALSE,,,http://edamontology.org/topic_3382,,1.4,,,,,,,,,,,,topic_3384,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.14 Nuclear medicine|VT 3.2.13 Medical imaging|VT 3.2.24 Radiology,The use of imaging techniques for clinical purposes for medical research.,,Radiology|Nuclear medicine,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3385,Light microscopy,,The use of optical instruments to magnify the image of an object.,FALSE,,,http://edamontology.org/topic_3382,,1.4,,,,,,,,,,,,topic_3385,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The use of optical instruments to magnify the image of an object.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3386,Laboratory animal science,,The use of animals and alternatives in experimental research.,FALSE,,,http://edamontology.org/topic_3344,,1.4,,,,,,,,,,,,topic_3386,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The use of animals and alternatives in experimental research.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3387,Marine biology,,The study of organisms in the ocean or brackish waters.,FALSE,,,http://edamontology.org/topic_3070,,1.4,,,,,,,,,,,,topic_3387,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.18 Marine and Freshwater biology,The study of organisms in the ocean or brackish waters.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3388,Molecular medicine,,The identification of molecular and genetic causes of disease and the development of interventions to correct them.,FALSE,,,http://edamontology.org/topic_3342,,1.4,,,,,,,,,,,,topic_3388,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The identification of molecular and genetic causes of disease and the development of interventions to correct them.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3390,Nutritional science,Nutrition science|Dietetics,"The study of the effects of food components on the metabolism, health, performance and disease resistance of humans and animals.  It also includes the study of human behaviours related to food choices.",FALSE,,,http://edamontology.org/topic_3344,,1.4,,,,,,,,,,,,topic_3390,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.3.7 Nutrition and Dietetics,"The study of the effects of food components on the metabolism, health, performance and disease resistance of humans and animals.  It also includes the study of human behaviours related to food choices.",Nutrition science,Dietetics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3391,Omics,,"The collective characterisation and quantification of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms.",FALSE,,,http://edamontology.org/topic_0003,,1.4,,,,,,,,,,,,topic_3391,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The collective characterisation and quantification of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3393,Quality affairs,Quality assurance|Good laboratory practice|Good clinical practice|Good manufacturing practice,The processes that need to be in place to ensure the quality of products for human or animal use.,FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3393,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The processes that need to be in place to ensure the quality of products for human or animal use.,Quality assurance,Good laboratory practice|Good clinical practice|Good manufacturing practice,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3394,Regulatory affairs,,"The protection of public health by controlling the safety and efficacy of products in areas including pharmaceuticals, veterinary medicine, medical devices, pesticides, agrochemicals, cosmetics, and complementary medicines.",FALSE,,,http://edamontology.org/topic_3376,,1.4,,,,,,,,,,,,topic_3394,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The protection of public health by controlling the safety and efficacy of products in areas including pharmaceuticals, veterinary medicine, medical devices, pesticides, agrochemicals, cosmetics, and complementary medicines.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3395,Regnerative medicine,Stem cell research,Biomedical approaches to clinical interventions that involve the use of stem cells.,FALSE,,,http://edamontology.org/topic_3344,,1.4,,,,,,,,,,,,topic_3395,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Biomedical approaches to clinical interventions that involve the use of stem cells.,Stem cell research,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3396,Systems medicine,,"An interdisciplinary field of study that looks at the dynamic systems of the human body as part of an integrted whole, incoporating biochemical, physiological, and environmental interactions that sustain life.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3396,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An interdisciplinary field of study that looks at the dynamic systems of the human body as part of an integrted whole, incoporating biochemical, physiological, and environmental interactions that sustain life.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3397,Veterinary medicine,,"Topic concerning the branch of medicine that deals with the prevention, diagnosis, and treatment of disease, disorder and injury in animals.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3397,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Topic concerning the branch of medicine that deals with the prevention, diagnosis, and treatment of disease, disorder and injury in animals.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3398,Bioengineering,,The application of biological concepts and methods to the analytical and synthetic methodologies of engineering.,FALSE,,,http://edamontology.org/topic_3297,,1.4,,,,,,,,,,,,topic_3398,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The application of biological concepts and methods to the analytical and synthetic methodologies of engineering.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3399,Geriatric medicine,Gerontology|Ageing|Aging|Geriatrics,"The branch of medicine dealing with the diagnosis, treatment and prevention of disease in older people, and the problems specific to aging.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3399,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Gerontology|Ageing|Aging,,VT 3.2.10 Geriatrics and gerontology,"The branch of medicine dealing with the diagnosis, treatment and prevention of disease in older people, and the problems specific to aging.",Geriatrics,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3400,"Allergy, clinical immunology and immunotherapeutics",Clinical immunology|Allergy|Immune disorders|Immunomodulators|Immunotherapeutics,"Health issues related to the immune system and their prevention, diagnosis and mangement.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3400,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.1 Allergy,"Health issues related to the immune system and their prevention, diagnosis and mangement.",,Clinical immunology|Allergy|Immune disorders|Immunomodulators|Immunotherapeutics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3401,Pain medicine,Algiatry,"The prevention of pain and the evaluation, treatment and rehabilitation of persons in pain.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3401,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The prevention of pain and the evaluation, treatment and rehabilitation of persons in pain.",Algiatry,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3402,Anaesthesiology,Anaesthetics,Anaesthesia and anaesthetics.,FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3402,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.2 Anaesthesiology,Anaesthesia and anaesthetics.,Anaesthetics,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3403,Critical care medicine,Acute medicine|Emergency medicine,"The multidisciplinary that cares for patients with acute, life-threatening illness or injury.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3403,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.5 Critical care/Emergency medicine,"The multidisciplinary that cares for patients with acute, life-threatening illness or injury.",Acute medicine|Emergency medicine,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3404,Dermatology,Dermatological disorders,"The branch of medicine that deals with prevention, diagnosis and treatment of disorders of the skin, scalp, hair and nails.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3404,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.7 Dermatology and venereal diseases,"The branch of medicine that deals with prevention, diagnosis and treatment of disorders of the skin, scalp, hair and nails.",,Dermatological disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3405,Dentistry,,"The study, diagnosis, prevention and treatments of disorders of the oral cavity, maxillofacial area and adjacent structures.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3405,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study, diagnosis, prevention and treatments of disorders of the oral cavity, maxillofacial area and adjacent structures.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3406,"Ear, nose and throat medicine",Audiovestibular medicine|Otorhinolaryngology|Otolaryngology|Head and neck disorders,"The branch of medicine that deals with the prevention, diagnosis, and treatment of disorders of the ear, nose and throat.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3406,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.20 Otorhinolaryngology,"The branch of medicine that deals with the prevention, diagnosis, and treatment of disorders of the ear, nose and throat.",Audiovestibular medicine|Otorhinolaryngology|Otolaryngology,Head and neck disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3407,Endocrinology and metabolism,Metabolic disorders|Endocrinology|Metabolism|Endocrine disorders,"The branch of medicine dealing with diseases of endocrine organs, hormone systems, their target organs, and disorders of the pathways of glucose and lipid metabolism.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3407,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The branch of medicine dealing with diseases of endocrine organs, hormone systems, their target organs, and disorders of the pathways of glucose and lipid metabolism.",,Metabolic disorders|Endocrinology|Metabolism|Endocrine disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3408,Haematology,Blood disorders|Haematological disorders,"The branch of medicine that deals with the blood, blood-forming organs and blood diseases.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3408,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.11 Hematology,"The branch of medicine that deals with the blood, blood-forming organs and blood diseases.",,Blood disorders|Haematological disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3409,Gastroenterology,Gastrointestinal disorders,"The branch of medicine that deals with disorders of the oesophagus, stomach, duodenum, jejenum, ileum, large intestine, sigmoid colon and rectum.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3409,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.8 Gastroenterology and hepatology,"The branch of medicine that deals with disorders of the oesophagus, stomach, duodenum, jejenum, ileum, large intestine, sigmoid colon and rectum.",,Gastrointestinal disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3410,Gender medicine,,The study of the biological and physiological differences between males and females and how they effect differences in disease presentation and management.,FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3410,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The study of the biological and physiological differences between males and females and how they effect differences in disease presentation and management.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3411,Gynaecology and obstetrics,Obstetrics|Gynaecology|Gynaecological disorders,"The branch of medicine that deals with the health of the female reproductive system, pregnancy and birth.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3411,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.15 Obstetrics and gynaecology,"The branch of medicine that deals with the health of the female reproductive system, pregnancy and birth.",,Obstetrics|Gynaecology|Gynaecological disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3412,Hepatic and biliary medicine,Hepatobiliary medicine|Liver disorders,"The branch of medicine that deals with the liver, gallbladder, bile ducts and bile.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3412,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The branch of medicine that deals with the liver, gallbladder, bile ducts and bile.",Hepatobiliary medicine,Liver disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3413,Infectious tropical disease,,The branch of medicine that deals with the infectious diseases of the tropics. ,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.4,,,,,,,,,,,,topic_3413,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The branch of medicine that deals with the infectious diseases of the tropics. ,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3324,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3414,Trauma medicine,,"The branch of medicine that treats body wounds or shock produced by sudden physical injury, as from violence or accident.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3414,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The branch of medicine that treats body wounds or shock produced by sudden physical injury, as from violence or accident.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3415,Medical toxicology,,"The branch of medicine that deals with the diagnosis, management and prevention of poisoning and other adverse health effects caused by medications, occupational and environmental toxins, and biological agents.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3415,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The branch of medicine that deals with the diagnosis, management and prevention of poisoning and other adverse health effects caused by medications, occupational and environmental toxins, and biological agents.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3416,Musculoskeletal medicine,Rheumatology|Musculoskeletal disorders|Orthopaedics,"The branch of medicine that deals with the prevention, diagnosis, and treatment of disorders of the muscle, bone and connective tissue.  It incorporates aspects of orthopaedics, rheumatology, rehabilitation medicine and pain medicine.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3416,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.26 Rheumatology|VT 3.2.19 Orthopaedics,"The branch of medicine that deals with the prevention, diagnosis, and treatment of disorders of the muscle, bone and connective tissue.  It incorporates aspects of orthopaedics, rheumatology, rehabilitation medicine and pain medicine.",,Rheumatology|Musculoskeletal disorders|Orthopaedics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3417,Opthalmology,Optometry|Eye disoders,"The branch of medicine that deals with disorders of the eye, including eyelid, optic nerve/visual pathways and occular muscles.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3417,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Optometry,,VT 3.2.18 Optometry|VT 3.2.17 Ophthalmology,"The branch of medicine that deals with disorders of the eye, including eyelid, optic nerve/visual pathways and occular muscles.",,Eye disoders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3418,Paediatrics,Child health,"The branch of medicine that deals with the medical care of infants, children and adolescents.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3418,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.21 Paediatrics,"The branch of medicine that deals with the medical care of infants, children and adolescents.",Child health,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3419,Psychiatry,Mental health|Psychiatric disorders,"The branch of medicine that deals with the mangement of mental illness, emotional disturbance and abnormal behaviour.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3419,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mental health,,VT 3.2.23 Psychiatry,"The branch of medicine that deals with the mangement of mental illness, emotional disturbance and abnormal behaviour.",,Psychiatric disorders,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3420,Reproductive health,Reproductive disorders|Andrology|Fertility medicine|Family planning,"The health of the reproductive processes, functions and systems at all stages of life.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3420,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.3 Andrology,"The health of the reproductive processes, functions and systems at all stages of life.",,Reproductive disorders|Andrology|Fertility medicine|Family planning,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3421,Surgery,Transplantation,"The use of operative, manual and instrumental techniques on a patient to investigate and/or treat a pathological condition or help improve bodily function or appearance.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3421,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.28 Transplantation,"The use of operative, manual and instrumental techniques on a patient to investigate and/or treat a pathological condition or help improve bodily function or appearance.",,Transplantation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3422,Urology and nephrology,Urology|Nephrology|Urological disorders|Kidney disease,"The branches of medicine and physiology focussing on the function and disorders of the urinary system in males and females, the reproductive system in males, and the kidney.",FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3422,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.2.29 Urology and nephrology,"The branches of medicine and physiology focussing on the function and disorders of the urinary system in males and females, the reproductive system in males, and the kidney.",,Urology|Nephrology|Urological disorders|Kidney disease,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3423,Complementary medicine,Alternative medicine|Integrative medicine|Holistic medicine,Medical therapies that fall beyond the scope of conventional medicine but may be used alongside it in the treatment of disease and ill health.,FALSE,,,http://edamontology.org/topic_3303,,1.4,,,,,,,,,,,,topic_3423,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alternative medicine|Integrative medicine|Holistic medicine,,VT 3.2.12 Integrative and Complementary medicine,Medical therapies that fall beyond the scope of conventional medicine but may be used alongside it in the treatment of disease and ill health.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3444,MRI,"Magnetic resonance imaging
|MRT|Magnetic resonance tomography|NMRI|Nuclear magnetic resonance imaging","Techniques that uses magnetic fields and radiowaves to form images, typically to investigate the anatomy and physiology of the human body.",FALSE,,,http://edamontology.org/topic_3382,,1.7,,,,,,,,,,,,topic_3444,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Techniques that uses magnetic fields and radiowaves to form images, typically to investigate the anatomy and physiology of the human body.","Magnetic resonance imaging
|MRT|Magnetic resonance tomography|NMRI|Nuclear magnetic resonance imaging",,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3448,Neutron diffraction,Neutron diffraction experiment|Elastic neutron scattering|Neutron microscopy,"The study of matter by studying the diffraction pattern from firing neutrons at a sample, typically to determine atomic and/or magnetic structure.",FALSE,,,http://edamontology.org/topic_3382|http://edamontology.org/topic_1317,,1.7,,,,,,,,,,,,topic_3448,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The study of matter by studying the diffraction pattern from firing neutrons at a sample, typically to determine atomic and/or magnetic structure.",Neutron diffraction experiment,Elastic neutron scattering|Neutron microscopy,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3452,Tomography,X-ray tomography|Electron tomography,"Imaging in sections (sectioning), through the use of a wave-generating device (tomograph) that generates an image (a tomogram).",FALSE,,,http://edamontology.org/topic_3382,,1.7,,,,,,,,,,,,topic_3452,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Imaging in sections (sectioning), through the use of a wave-generating device (tomograph) that generates an image (a tomogram).",,X-ray tomography|Electron tomography,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3473,Data mining,KDD|Knowledge discovery in databases|Pattern recognition,The discovery of patterns in large data sets and the extraction and trasnsformation of those patterns into a useful format.,FALSE,,,http://edamontology.org/topic_3316,,1.7,,,,,,,,,,,,topic_3473,,,,,,,,,,,,,,,,,,,,,,,,,,,,,KDD|Knowledge discovery in databases,,VT 1.3.2 Data mining,The discovery of patterns in large data sets and the extraction and trasnsformation of those patterns into a useful format.,,Pattern recognition,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3474,Machine learning,Artificial Intelligence,"A topic concerning the application of artificial intelligence methods to algorithms, in order to create methods that can learn from data in order to generate an ouput, rather than relying on explicitly encoded information only.",FALSE,,,http://edamontology.org/topic_3316,,1.7,,,,,,,,,,,,topic_3474,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Artificial Intelligence,,"VT 1.2.2 Artificial Intelligence (expert systems, machine learning, robotics)","A topic concerning the application of artificial intelligence methods to algorithms, in order to create methods that can learn from data in order to generate an ouput, rather than relying on explicitly encoded information only.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3489,Database management,"Databases|Database administration|Content management|Record management|Document management|File management|Data maintenance|Document, record and content management|Biological databases","The general handling of data stored in digital archives such as databanks, databases proper, web portals and other data resources.
|This includes databases for the results of scientific experiments, the application of high-throughput technology, computational analysis and the scientific literature.  It covers the management and manipulation of digital documents, including database records, files and reports.",FALSE,,,http://edamontology.org/topic_3071,,1.8,,,,,,,,,,,,topic_3489,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The general handling of data stored in digital archives such as databanks, databases proper, web portals and other data resources.
",Databases|Database administration,"Content management|Record management|Document management|File management|Data maintenance|Document, record and content management|Biological databases",,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3500,Zoology,Animal biology|Metazoa|Animal|Animals,"Animals, e.g. information on a specific animal genome including molecular sequences, genes and annotation.|The study of the animal kingdom.",FALSE,,,http://edamontology.org/topic_3070,,1.8,,,,,,,,,,,,topic_3500,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.29 Zoology,"Animals, e.g. information on a specific animal genome including molecular sequences, genes and annotation.",Animal biology|Metazoa|Animal|Animals,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3510,"Protein sites, features and motifs",Protein sequence features|Signal peptide cleavage sites,"The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in protein sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.|A signal peptide coding sequence encodes an N-terminal domain of a secreted protein, which is involved in attaching the polypeptide to a membrane leader sequence. A transit peptide coding sequence encodes an N-terminal domain of a nuclear-encoded organellar protein; which is involved in import of the protein into the organelle.",FALSE,,,http://edamontology.org/topic_0160|http://edamontology.org/topic_0078,,1.8,,,,,,,,,,,,topic_3510,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in protein sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.",,Protein sequence features|Signal peptide cleavage sites,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3511,"Nucleic acid sites, features and motifs",Primer binding sites|Sequence tagged sites|Nucleic acid sequence features|Nucleic acid functional sites,"The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in nucleic acid sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.|Sequence tagged sites are short DNA sequences that are unique within a genome and serve as a mapping landmark, detectable by PCR they allow a genome to be mapped via an ordering of STSs.",FALSE,,,http://edamontology.org/topic_0160|http://edamontology.org/topic_0077,,1.8,,,,,,,,,,,,topic_3511,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in nucleic acid sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them.",,Primer binding sites|Sequence tagged sites|Nucleic acid sequence features|Nucleic acid functional sites,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3512,Gene transcripts,mRNA features|PolyA signal|PolyA site|Fusion transcripts|Gene transcript features|Coding RNA|Transit peptide coding sequence|Signal peptide coding sequence|Introns|Exons|cDNA|mRNA|EST,"Transcription of DNA into RNA and features of a messenger RNA (mRNA) molecules including precursor RNA, primary (unprocessed) transcript and fully processed molecules.|This includes 5'untranslated region (5'UTR), coding sequences (CDS), exons, intervening sequences (intron) and 3'untranslated regions (3'UTR).|This includes regions or sites in a eukaryotic and eukaryotic viral RNA sequence which directs endonuclease cleavage or polyadenylation of an RNA transcript.  A polyA signal is required for endonuclease cleavage of an RNA transcript that is followed by polyadenylation. A polyA site is a site on an RNA transcript to which adenine residues will be added during post-transcriptional polyadenylation.|This includes Introns, and protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames.  Also expressed sequence tag (EST) or complementary DNA (cDNA) sequences.|This includes coding sequences for a signal or transit peptide.  A signal peptide coding sequence encodes an N-terminal domain of a secreted protein, which is involved in attaching the polypeptide to a membrane leader sequence. A transit peptide coding sequence encodes an N-terminal domain of a nuclear-encoded organellar protein; which is involved in import of the protein into the organelle.",FALSE,,,http://edamontology.org/topic_0114|http://edamontology.org/topic_0099,,1.8,,,,,,,,,,,,topic_3512,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Transcription of DNA into RNA and features of a messenger RNA (mRNA) molecules including precursor RNA, primary (unprocessed) transcript and fully processed molecules.",mRNA features,PolyA signal|PolyA site|Fusion transcripts|Gene transcript features|Coding RNA|Transit peptide coding sequence|Signal peptide coding sequence|Introns|Exons|cDNA|mRNA|EST,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3514,Protein-ligand interactions,Protein-drug interactions,Protein-ligand (small molecule) interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3514,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein-ligand (small molecule) interaction(s).,,Protein-drug interactions,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0128,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3515,Protein-drug interactions,,Protein-drug interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3515,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein-drug interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0128,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3516,Genotyping experiment,,"Genotype experiment including case control, population, and family studies. These might use array based methods and re-sequencing methods.",FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3516,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Genotype experiment including case control, population, and family studies. These might use array based methods and re-sequencing methods.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3517,GWAS study,Genome-wide association study,Genome-wide association study experiments.,FALSE,,,http://edamontology.org/topic_3678,,1.8,,,,,,,,,,,,topic_3517,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Genome-wide association study experiments.,Genome-wide association study,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3518,Microarray experiment,Microarrays|Multichannel microarray|MicroRNA array|ChIP-on-chip|One channel microarray|miRNA array|mRNA microarray|Proprietary platform micoarray|Methylation array|Reverse phase protein array|Genotyping array|Tissue microarray|Two channel microarray,"Microarray experiments including conditions, protocol, sample:data relationships etc.|This might specify which raw data file relates to which sample and information on hybridisations, e.g. which are technical and which are biological replicates.",FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3518,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Microarray experiments including conditions, protocol, sample:data relationships etc.",Microarrays,Multichannel microarray|MicroRNA array|ChIP-on-chip|One channel microarray|miRNA array|mRNA microarray|Proprietary platform micoarray|Methylation array|Reverse phase protein array|Genotyping array|Tissue microarray|Two channel microarray,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3519,PCR experiment,,"PCR experiments, e.g. quantitative real-time PCR.",FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3519,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"PCR experiments, e.g. quantitative real-time PCR.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3520,Proteomics experiment,Northern blot experiment|2D PAGE experiment|Mass spectrometry,"Proteomics experiments.|This includes two-dimensional gel electrophoresis (2D PAGE) experiments, gels or spots in a gel.  Also mass spectrometry - an analytical chemistry technique that measures the mass-to-charge ratio and abundance of ions in the gas phase.  Also Northern blot experiments.",FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3520,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Proteomics experiments.,,Northern blot experiment|2D PAGE experiment|Mass spectrometry,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3521,2D PAGE experiment,,"Two-dimensional gel electrophoresis experiments, gels or spots in a gel.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3521,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Two-dimensional gel electrophoresis experiments, gels or spots in a gel.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3520,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3522,Northern blot experiment,,Northern Blot experiments.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3522,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Northern Blot experiments.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3520,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3523,RNAi experiment,,RNAi experiments.,FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3523,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNAi experiments.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3524,Simulation experiment,,"Biological computational model experiments (simulation), for example the minimum information required in order to permit its correct interpretation and reproduction.",FALSE,,,http://edamontology.org/topic_3361,,1.8,,,,,,,,,,,,topic_3524,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Biological computational model experiments (simulation), for example the minimum information required in order to permit its correct interpretation and reproduction.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3525,Protein-nucleic acid interactions,,Protein-DNA/RNA interaction(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3525,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Protein-DNA/RNA interaction(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0128,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3526,Protein-protein interactions,,"Protein-protein interaction(s), including interactions between protein domains.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3526,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Protein-protein interaction(s), including interactions between protein domains.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0128,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3527,Cellular process pathways,,Cellular process pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3527,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cellular process pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3528,Disease pathways,,"Disease pathways, typically of human disease.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3528,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Disease pathways, typically of human disease.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3529,Environmental information processing pathways,,Environmental information processing pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3529,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Environmental information processing pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3530,Genetic information processing pathways,,Genetic information processing pathways.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3530,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Genetic information processing pathways.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0602,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3531,Protein super-secondary structure,,Super-secondary structure of protein sequence(s).,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3531,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Super-secondary structure of protein sequence(s).,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3542,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3533,Protein active sites,,Catalytic residues (active site) of an enzyme.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3533,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Catalytic residues (active site) of an enzyme.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3510,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3534,Protein binding sites,Protein functional sites|Protein cleavage sites|Enzyme active site|Protein-nucleic acid binding sites|Protein key folding sites,"Binding sites in proteins, including cleavage sites (for a proteolytic enzyme or agent), key residues involved in protein folding, catalytic residues (active site) of an enzyme, ligand-binding (non-catalytic) residues of a protein, such as sites that bind metal, prosthetic groups or lipids, RNA and DNA-binding proteins and binding sites etc.",FALSE,,,http://edamontology.org/topic_3510,,1.8,,,,,,,,,,,,topic_3534,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Binding sites in proteins, including cleavage sites (for a proteolytic enzyme or agent), key residues involved in protein folding, catalytic residues (active site) of an enzyme, ligand-binding (non-catalytic) residues of a protein, such as sites that bind metal, prosthetic groups or lipids, RNA and DNA-binding proteins and binding sites etc.",,Protein functional sites|Protein cleavage sites|Enzyme active site|Protein-nucleic acid binding sites|Protein key folding sites,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3535,Protein-nucleic acid binding sites,,RNA and DNA-binding proteins and binding sites in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3535,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,RNA and DNA-binding proteins and binding sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3534,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3536,Protein cleavage sites,,Cleavage sites (for a proteolytic enzyme or agent) in a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3536,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Cleavage sites (for a proteolytic enzyme or agent) in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3510,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3537,Protein chemical modifications,,Chemical modification of a protein.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3537,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Chemical modification of a protein.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0601,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3538,Protein disordered structure,Protein features (disordered structure),Disordered structure in a protein.,FALSE,,,http://edamontology.org/topic_2814,,1.8,,,,,,,,,,,,topic_3538,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Disordered structure in a protein.,Protein features (disordered structure),,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3539,Protein domains,,Structural domains or 3D folds in a protein or polypeptide chain.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3539,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Structural domains or 3D folds in a protein or polypeptide chain.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0736,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3540,Protein key folding sites,,Key residues involved in protein folding.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3540,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Key residues involved in protein folding.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3510,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3541,Protein post-translational modifications,,"Post-translation modifications in a protein sequence, typically describing the specific sites involved.",TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3541,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Post-translation modifications in a protein sequence, typically describing the specific sites involved.",,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0601,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3542,Protein secondary structure,Protein features (secondary structure)|Protein super-secondary structure,"Secondary structure (predicted or real) of a protein, including super-secondary structure.|Super-secondary structures include leucine zippers, coiled coils, Helix-Turn-Helix etc.|The location and size of the secondary structure elements and intervening loop regions is typically given.  The report can include disulphide bonds and post-translationally formed peptide bonds (crosslinks).",FALSE,,,http://edamontology.org/topic_2814,,1.8,,,,,,,,,,,,topic_3542,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Secondary structure (predicted or real) of a protein, including super-secondary structure.",Protein features (secondary structure),Protein super-secondary structure,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3543,Protein sequence repeats,,Short repetitive subsequences (repeat sequences) in a protein sequence.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3543,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Short repetitive subsequences (repeat sequences) in a protein sequence.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_0157,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3544,Protein signal peptides,,Signal peptides or signal peptide cleavage sites in protein sequences.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.8,,,,,,,,,,,,topic_3544,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Signal peptides or signal peptide cleavage sites in protein sequences.,,,,,http://purl.obolibrary.org/obo/edam#obsolete,,http://edamontology.org/topic_3510,,,,,,,,,,,,,1.13,,,,,,,
http://edamontology.org/topic_3557,Protein interaction experiment,Phage display|Yeast two-hybrid|Yeast one-hybrid|Co-immunoprecipitation,An experiment for studying protein-protein interactions.,FALSE,,,http://edamontology.org/topic_3361,,1.12,,,,,,,,,,,,topic_3557,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An experiment for studying protein-protein interactions.,,Phage display|Yeast two-hybrid|Yeast one-hybrid|Co-immunoprecipitation,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3569,Applied mathematics,,"The application of mathematics to specific problems in science, typically by the formulation and analysis of mathematical models.",FALSE,,,http://edamontology.org/topic_3315,,1.10,,,,,,,,,,,,topic_3569,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.1.1 Applied mathematics,"The application of mathematics to specific problems in science, typically by the formulation and analysis of mathematical models.",,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3570,Pure mathematics,,The study of abstract mathematical concepts.,FALSE,,,http://edamontology.org/topic_3315,,1.10,,,,,,,,,,,,topic_3570,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.1.1 Pure mathematics,The study of abstract mathematical concepts.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3571,Data governance,Data stewardship,"The control of data entry and maintenance to ensure the data meets defined standards, qualities or constraints.",FALSE,,,http://edamontology.org/topic_3071,,1.10,,,,,,,,,,,,topic_3571,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The control of data entry and maintenance to ensure the data meets defined standards, qualities or constraints.",,Data stewardship,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3572,Data quality management,Data clean-up|Data integrity|Data quality,"The quality, integrity, and cleaning up of data. ",FALSE,,,http://edamontology.org/topic_3071,,1.10,,,,,,,,,,,,topic_3572,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The quality, integrity, and cleaning up of data. ",,Data clean-up|Data integrity|Data quality,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3573,Freshwater biology,,The study of organisms in freshwater ecosystems.,FALSE,,,http://edamontology.org/topic_3070,,1.10,,,,,,,,,,,,topic_3573,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 1.5.18 Marine and Freshwater biology,The study of organisms in freshwater ecosystems.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3574,Human genetics,,The study of inheritatnce in human beings.,FALSE,,,http://edamontology.org/topic_3053,,1.10,,,,,,,,,,,,topic_3574,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.1.2 Human genetics,The study of inheritatnce in human beings.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3575,Tropical medicine,,Health problems that are prevalent in tropical and subtropical regions.,FALSE,,,http://edamontology.org/topic_3303,,1.10,,,,,,,,,,,,topic_3575,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.3.14 Tropical medicine,Health problems that are prevalent in tropical and subtropical regions.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3576,Medical biotechnology,Pharmaceutical biotechnology,Biotechnology applied to the medical sciences and the development of medicines.,FALSE,,,http://edamontology.org/topic_3297,,1.10,,,,,,,,,,,,topic_3576,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.4.1 Biomedical devices|VT 3.4 Medical biotechnology|VT 3.4.2 Health-related biotechnology|VT 3.3.14 Tropical medicine,Biotechnology applied to the medical sciences and the development of medicines.,,Pharmaceutical biotechnology,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3577,Personalised medicine,Molecular diagnostics,Health problems that are prevalent in tropical and subtropical regions.,FALSE,,,http://edamontology.org/topic_3303,,1.10,,,,,,,,,,,,topic_3577,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VT 3.4.5 Molecular diagnostics,Health problems that are prevalent in tropical and subtropical regions.,,Molecular diagnostics,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3656,Immunoprecipitation experiment,Chromatin immunoprecipitation|,"Experimental techniques to purify a protein-DNA crosslinked complex.  Usually sequencing follows e.g. in the techniques ChIP-chip, ChIP-seq and MeDIP-seq.",FALSE,,,http://edamontology.org/topic_3361,,1.12,,,,,,,,,,,,topic_3656,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Experimental techniques to purify a protein-DNA crosslinked complex.  Usually sequencing follows e.g. in the techniques ChIP-chip, ChIP-seq and MeDIP-seq.",Chromatin immunoprecipitation,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3673,Whole genome sequencing,WGS|Whole genome resequencing,Laboratory technique to sequence the complete DNA sequence of an organism's genome at a single time.,FALSE,,,http://edamontology.org/topic_3168,,1.12,,,https://en.wikipedia.org/wiki/Whole_genome_sequencing,,,,,,,,,topic_3673,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Laboratory technique to sequence the complete DNA sequence of an organism's genome at a single time.,WGS,Whole genome resequencing,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3674,Methylated DNA immunoprecipitation,MeDIP-seq|MeDIP-chip|mDIP|WGBS|methyl-seq|methy-seq|Whole-genome bisulfite sequencing|MeDIP|Methylation sequencing|Bisulfite sequencing|Methylated DNA immunoprecipitation (MeDIP),Laboratory technique to sequence the methylated regions in DNA.,FALSE,,,http://edamontology.org/topic_3656,,1.12,,,https://en.wikipedia.org/wiki/Whole_genome_sequencing,,,,,,,,,topic_3674,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Laboratory technique to sequence the methylated regions in DNA.,MeDIP-seq|MeDIP-chip|mDIP,WGBS|methyl-seq|methy-seq|Whole-genome bisulfite sequencing|MeDIP|Methylation sequencing|Bisulfite sequencing|Methylated DNA immunoprecipitation (MeDIP),,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3676,Exome sequencing,Exome|Targeted exome capture|Exome analysis|Exome capture,"Laboratory technique to sequence all the protein-coding regions in a genome, i.e., the exome.|Exome sequencing is considered a cheap alternative to whole genome sequencing.",FALSE,,,http://edamontology.org/topic_3168,,1.1,,,https://en.wikipedia.org/wiki/Exome_sequencing,,,,,,,,,topic_3676,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Laboratory technique to sequence all the protein-coding regions in a genome, i.e., the exome.",Exome|Targeted exome capture|Exome analysis|Exome capture,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3678,Experimental design and studies,Design of experiments|Studies|Experimental design,"The design of an experiment intended to test a hypothesis, and describe or explain empirical data obtained under various experimental conditions.",FALSE,,,http://edamontology.org/topic_0003,,1.12,,,https://en.wikipedia.org/wiki/Design_of_experiments,,,,,,,,,topic_3678,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"The design of an experiment intended to test a hypothesis, and describe or explain empirical data obtained under various experimental conditions.",Design of experiments|Studies|Experimental design,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3679,Animal study,Challenge study,The design of an experiment involving non-human animals.,FALSE,,,http://edamontology.org/topic_3386|http://edamontology.org/topic_3678,,1.12,,,,,,,,,,,,topic_3679,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The design of an experiment involving non-human animals.,,Challenge study,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3697,Microbial ecology,Environmental microbiology|Microbiome|Molecular community analysis|Community analysis,The ecology of microorganisms including their relationship with one another and their environment.,FALSE,,,http://edamontology.org/topic_0610|http://edamontology.org/topic_3301,,1.13,,,,,,,,,,,,topic_3697,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,The ecology of microorganisms including their relationship with one another and their environment.,Environmental microbiology,Microbiome|Molecular community analysis|Community analysis,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,TRUE,,,,,,,,,
http://edamontology.org/topic_3794,RNA immunoprecipitation,RIP|iCLIP|HITS-CLIP|CLIP-seq|CLIP|PAR-CLIP,An antibody-based technique used to map in vivo RNA-protein interactions.,FALSE,,,http://edamontology.org/topic_3656,,1.17,,,,,,,,,,,,topic_3794,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An antibody-based technique used to map in vivo RNA-protein interactions.,RIP,iCLIP|HITS-CLIP|CLIP-seq|CLIP|PAR-CLIP,,,http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://edamontology.org/topic_3796,Population genomics,,Large-scale study (typically comparison) of DNA sequences of populations.,FALSE,,,http://edamontology.org/topic_0622,,1.17,,,,,,,,,,,,topic_3796,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Large-scale study (typically comparison) of DNA sequences of populations.,,,,,http://purl.obolibrary.org/obo/edam#edam|http://purl.obolibrary.org/obo/edam#events|http://purl.obolibrary.org/obo/edam#topics,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,Obsolete concept (EDAM),,An obsolete concept (redefined in EDAM).|Needed for conversion to the OBO format.,TRUE,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,1.2,,,,,,,,,,,,oboInOwl:ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,An obsolete concept (redefined in EDAM).,,,,,,,http://www.w3.org/2002/07/owl#DeprecatedClass,,,,,,,,,,,,,,,,,,,,
http://www.w3.org/2002/07/owl#DeprecatedClass,DeprecatedClass,,,FALSE,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,,,,,,,owl:DeprecatedClass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,