EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021
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Preferred Name

Sequence coordinates
Synonyms

Sequence coordinates

Map position

Locus
Definitions

A position in a map (for example a genetic map), either a single position (point) or a region / interval. This includes positions in genomes based on a reference sequence. A position may be specified for any mappable object, i.e. anything that may have positional information such as a physical position in a chromosome. Data might include sequence region name, strand, coordinate system name, assembly name, start position and end position.
ID

http://edamontology.org/data_2012
comment

This includes positions in genomes based on a reference sequence. A position may be specified for any mappable object, i.e. anything that may have positional information such as a physical position in a chromosome. Data might include sequence region name, strand, coordinate system name, assembly name, start position and end position.
Created in

beta12orEarlier
hasDbXref

Moby:Position

Moby:GCP_MapPosition

Moby:GCP_MapPoint

Moby:HitPosition

PDBML:_atom_site.id

Moby:GenePosition

Moby:GCP_MapInterval

Moby:MapPosition

Moby:Locus
hasDefinition

A position in a map (for example a genetic map), either a single position (point) or a region / interval.
hasExactSynonym

Sequence coordinates

Map position

Locus
inSubset

http://edamontology.org/bio

http://edamontology.org/data
label

Sequence coordinates
prefixIRI

data_2012
prefLabel

Sequence coordinates
subClassOf

http://edamontology.org/data_0006

http://edamontology.org/data_1016

http://edamontology.org/data_1017
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