EDAM - The data analysis and management ontology - Protein sequence record (lite) - Classes

EDAM - The data analysis and management ontology

Last uploaded: February 26, 2021

Id	http://edamontology.org/data_2047 http://edamontology.org/data_2047
Preferred Name	Protein sequence record (lite)
Definitions	A protein sequence and minimal metadata, typically an identifier of the sequence and/or a comment.
Obsolete	true
Type	http://www.w3.org/2002/07/owl#Class

label	Protein sequence record (lite)
prefLabel	Protein sequence record (lite)
inSubset	http://edamontology.org/obsolete
prefixIRI	data_2047
replacedBy	http://edamontology.org/data_0849
subClassOf	http://www.w3.org/2002/07/owl#DeprecatedClass
hasDefinition	A protein sequence and minimal metadata, typically an identifier of the sequence and/or a comment.
deprecated	true
type	http://www.w3.org/2002/07/owl#Class
Obsolete since	1.8
Old parent	http://www.w3.org/2002/07/owl#Thing
Created in	March 12, 2025

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Subject	Author	Type	Class	Created
Other disease analysis?	mkalas	Comment	http://edamontology.org/operation_4033	2023-03-30
Data integration (operation)	mkalas	Comment	http://edamontology.org/operation_3453	2022-05-13
Add broad synonym FAIR research outputs?	mkalas	Comment	http://edamontology.org/topic_4012	2022-05-04
Rename to "Sex or gender differences in"..."(human) health/disease/medicine"	mkalas	Comment	http://edamontology.org/topic_3410	2022-01-20
Genome accession vs. identifier vs. build identifier	mkalas	Comment	http://edamontology.org/data_2749	2021-12-15
Together with Transcriptomics, Gene expression study/analysis, EWAS, ...	mkalas	Comment	http://edamontology.org/topic_3517	2021-11-29
Do we also need Gene imprinting and similar topics?	mkalas	Comment	http://edamontology.org/topic_3974	2021-11-29
Add disordered protein/region conformation assignment? And tertiary structure?	mkalas	Comment	http://edamontology.org/operation_0320	2021-11-12
Integrative bioinformatics	mkalas	Comment	http://edamontology.org/topic_0091	2021-10-07
RDF? OWL?	mkalas	Comment	http://edamontology.org/format_3156	2021-09-05
Also quaternary -> rather call 3D?	mkalas	Comment	http://edamontology.org/format_2033	2021-09-02
Add Global health etc., Prevention, Lifestyle etc., distinguish clinical & preventive, add Healthcare?	mkalas	Comment	http://edamontology.org/topic_3305	2021-08-27
Distinguish clinical & scientific?	mkalas	Comment	http://edamontology.org/topic_0804	2021-08-27
Data collection vs. acquisition	mkalas	Comment	http://edamontology.org/topic_3077	2021-08-15
New Class Proposal: Glycomics under Omics	mkalas	New Class Proposal	http://edamontology.org/topic_3292	2021-08-10
Document/Text classification	mkalas	Comment	http://edamontology.org/operation_0306	2021-07-28
Event extraction	mkalas	Comment	http://edamontology.org/operation_3625	2021-07-28
Syntactic analysis	mkalas	Comment	http://edamontology.org/operation_0306	2021-07-28
under HDF5 + add concrete NetCDF standards (e.g. CF..)	mkalas	Comment	http://edamontology.org/format_3650	2021-07-27
Add OME-Zarr	mkalas	Comment	http://edamontology.org/format_3915	2021-07-27
under TIFF	mkalas	Comment	http://edamontology.org/format_3727	2021-07-27
Visual analaysis	mkalas	Comment	http://edamontology.org/operation_0337	2021-07-26
XR, AR, VR, Mixed R visualisation	mkalas	Comment	http://edamontology.org/operation_0337	2021-07-26
Interactive visualisation	mkalas	Comment	http://edamontology.org/operation_0337	2021-07-26
Struct bio v. Struct bioinf v. Cheminf v. Biophys ...	mkalas	Comment	http://edamontology.org/topic_1317	2021-07-26
Merge with Bioinformatics	mkalas	Comment	http://edamontology.org/topic_3307	2021-07-25
Incl. Sensitive data (handling)	mkalas	Comment	http://edamontology.org/topic_3263	2021-07-25
Probably needs a couple of refined concepts	mkalas	Comment	http://edamontology.org/topic_3174	2021-07-25
Pathogens	mkalas	Comment	http://edamontology.org/topic_3324	2021-07-25
Create a generic topic Life science(s)/Biosciences	mkalas	Comment	http://edamontology.org/topic_3070	2021-07-25
Merge with computational chemistry?	mkalas	Comment	http://edamontology.org/topic_2258	2021-07-25
Refine	mkalas	Comment	http://edamontology.org/topic_3305	2021-07-25
Refactor Env science(s)	mkalas	Comment	http://edamontology.org/topic_3855	2021-07-25
Chem(o)informatics synonym	mkalas	Comment	http://edamontology.org/topic_3332	2021-07-25
Geoscience(s) & Astronomy/Astroscience(s)	mkalas	Comment	http://edamontology.org/topic_3318	2021-07-25
Merge with (Bio)Medical science(s)?	mkalas	Comment	http://edamontology.org/topic_3303	2021-07-25
More RDF formats?	mkalas	Comment	http://edamontology.org/format_2376	2021-07-20
Confusing OWL vs RDF	mkalas	Comment	http://edamontology.org/format_2197	2021-07-20
ttl extension?	mkalas	Comment	http://edamontology.org/format_3255	2021-07-20
Unmix with historical concepts [Old bug found:(]	mkalas	Comment	http://edamontology.org/topic_4011	2021-07-20
(SKOS not needed?)	mkalas	Comment	http://edamontology.org/format_2197	2021-07-20
Topics to add and to leave out(?)	mkalas	Comment	http://edamontology.org/topic_4010	2021-07-13
Data rescue	mkalas	Comment	http://edamontology.org/topic_4011	2021-07-13
New Class Proposal: Missing concept(s)	mkalas	New Class Proposal	http://edamontology.org/topic_0003	2021-07-13
Add main missing ecology topics	mkalas	Comment	http://edamontology.org/topic_0610	2021-07-13
Optical (genome) mapping	mkalas	Comment	http://edamontology.org/topic_3382	2021-07-07
To be updated from EDAM Bioimaging	mkalas	Comment	http://edamontology.org/operation_3443	2021-07-06
To be updated from EDAM Bioimaging	mkalas	Comment	http://edamontology.org/topic_3474	2021-07-06
To be updated from EDAM Bioimaging	mkalas	Comment	http://edamontology.org/topic_3382	2021-07-06
(Molecular) contact map alignment	mkalas	Comment	http://edamontology.org/data_1479	2021-06-12

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