EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021
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Preferred Name

Sequence tag profile
Synonyms

Sequencing-based expression profile

Sequence tag profile (with gene assignment)
Definitions

Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment. In all cases this is a list of short sequence tags and the number of times it is observed. SAGE, MPSS and SBS experiments are usually performed to study gene expression. The sequence tags are typically subsequently annotated (after a database search) with the mRNA (and therefore gene) the tag was extracted from. This includes tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.
ID

http://edamontology.org/data_2535
comment

SAGE, MPSS and SBS experiments are usually performed to study gene expression. The sequence tags are typically subsequently annotated (after a database search) with the mRNA (and therefore gene) the tag was extracted from.

This includes tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.
Created in

beta12orEarlier
hasDefinition

Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment. In all cases this is a list of short sequence tags and the number of times it is observed.
hasExactSynonym

Sequencing-based expression profile
hasNarrowSynonym

Sequence tag profile (with gene assignment)
inSubset

http://edamontology.org/bio

http://edamontology.org/data
label

Sequence tag profile
prefixIRI

data_2535
prefLabel

Sequence tag profile
subClassOf

http://edamontology.org/data_0928
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