EDAM - Bioscientific data analysis ontology - BAM - Classes

Last uploaded: February 26, 2021

Preferred Name	BAM
Synonyms
Definitions	BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.
ID	http://edamontology.org/format_2572
Created in	beta12orEarlier
Documentation	https://samtools.github.io/hts-specs/SAMv1.pdf
hasDbXref	https://samtools.github.io/hts-specs/SAMv1.pdf
hasDefinition	BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.
inSubset	http://edamontology.org/bio http://edamontology.org/formats
label	BAM
prefixIRI	format_2572
prefLabel	BAM
subClassOf	http://edamontology.org/format_2057 http://edamontology.org/format_2920 http://edamontology.org/format_2333

Delete	Subject	Author	Type	Created
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Mapping To	Ontology	Source
http://edamontology.org/format_2572	ITO	SAME_URI
http://edamontology.org/format_2572	ERO	SAME_URI
http://purl.obolibrary.org/obo/NCBIGene_43038	CCO	LOOM
http://purl.obolibrary.org/obo/GAZ_00617793	GAZ	LOOM
http://edamontology.org/format_2572	ITO	LOOM
http://edamontology.org/format_2572	ERO	LOOM