EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021
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Preferred Name

Protein threading
Synonyms

Sequence-structure alignment

Sequence-to-3D-profile alignment

Sequence-3D profile alignment
Definitions

Align molecular sequence to structure in 3D space (threading). This includes sequence-to-3D-profile alignment methods, which align molecular sequence(s) to structural (3D) profile(s) or template(s) (representing a structure or structure alignment) - methods might perform one-to-one, one-to-many or many-to-many comparisons. Use this concept for methods that evaluate sequence-structure compatibility by assessing residue interactions in 3D. Methods might perform one-to-one, one-to-many or many-to-many comparisons.
ID

http://edamontology.org/operation_0302
comment

This includes sequence-to-3D-profile alignment methods, which align molecular sequence(s) to structural (3D) profile(s) or template(s) (representing a structure or structure alignment) - methods might perform one-to-one, one-to-many or many-to-many comparisons.

Use this concept for methods that evaluate sequence-structure compatibility by assessing residue interactions in 3D. Methods might perform one-to-one, one-to-many or many-to-many comparisons.
Created in

beta12orEarlier
hasDefinition

Align molecular sequence to structure in 3D space (threading).
hasExactSynonym

Sequence-structure alignment
hasNarrowSynonym

Sequence-to-3D-profile alignment

Sequence-3D profile alignment
inSubset

http://edamontology.org/bio

http://edamontology.org/operations
label

Protein threading
prefixIRI

operation_0302
prefLabel

Protein threading
seeAlso

https://en.wikipedia.org/wiki/Threading_(protein_sequence)
subClassOf

http://edamontology.org/operation_0303
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