Transcriptional regulatory element prediction

Regulatory element prediction

Transcription regulatory element prediction

Conserved transcription regulatory sequence identification

Translational regulatory element prediction

Identify or predict transcriptional regulatory motifs, patterns, elements or regions in DNA sequences. This includes comparative genomics approaches that identify common, conserved (homologous) or synonymous transcriptional regulatory elements. For example cross-species comparison of transcription factor binding sites (TFBS). Methods might analyse co-regulated or co-expressed genes, or sets of oppositely expressed genes. This includes promoters, enhancers, silencers and boundary elements / insulators, regulatory protein or transcription factor binding sites etc. Methods might be specific to a particular genome and use motifs, word-based / grammatical methods, position-specific frequency matrices, discriminative pattern analysis etc.

http://edamontology.org/operation_0438

This includes comparative genomics approaches that identify common, conserved (homologous) or synonymous transcriptional regulatory elements. For example cross-species comparison of transcription factor binding sites (TFBS). Methods might analyse co-regulated or co-expressed genes, or sets of oppositely expressed genes.

This includes promoters, enhancers, silencers and boundary elements / insulators, regulatory protein or transcription factor binding sites etc. Methods might be specific to a particular genome and use motifs, word-based / grammatical methods, position-specific frequency matrices, discriminative pattern analysis etc.

beta12orEarlier

Identify or predict transcriptional regulatory motifs, patterns, elements or regions in DNA sequences.

Regulatory element prediction

Transcription regulatory element prediction

Conserved transcription regulatory sequence identification

Translational regulatory element prediction

http://edamontology.org/bio

http://edamontology.org/operations

Transcriptional regulatory element prediction

operation_0438

Transcriptional regulatory element prediction

http://edamontology.org/operation_2454