EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021
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Preferred Name

SNP detection
Synonyms

Single nucleotide polymorphism detection

SNP discovery

SNP calling
Definitions

Find single nucleotide polymorphisms (SNPs) - single nucleotide change in base positions - between sequences. Typically done for sequences from a high-throughput sequencing experiment that differ from a reference genome and which might, especially by reference to population frequency or functional data, indicate a polymorphism. This includes functional SNPs for large-scale genotyping purposes, disease-associated non-synonymous SNPs etc.
ID

http://edamontology.org/operation_0484
comment

This includes functional SNPs for large-scale genotyping purposes, disease-associated non-synonymous SNPs etc.
Created in

beta12orEarlier
hasDefinition

Find single nucleotide polymorphisms (SNPs) - single nucleotide change in base positions - between sequences. Typically done for sequences from a high-throughput sequencing experiment that differ from a reference genome and which might, especially by reference to population frequency or functional data, indicate a polymorphism.
hasExactSynonym

Single nucleotide polymorphism detection

SNP discovery

SNP calling
inSubset

http://edamontology.org/bio

http://edamontology.org/operations
label

SNP detection
prefixIRI

operation_0484
prefLabel

SNP detection
subClassOf

http://edamontology.org/operation_3227
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