EDAM - Bioscientific data analysis ontology - Mapping assembly - Classes

Last uploaded: February 26, 2021

Preferred Name	Mapping assembly
Synonyms	Sequence assembly (mapping assembly)
Definitions	Sequence assembly by combining fragments using an existing backbone sequence, typically a reference genome. The final sequence will resemble the backbone sequence. Mapping assemblers are usually much faster and less memory intensive than de-novo assemblers.
ID	http://edamontology.org/operation_0523
comment	The final sequence will resemble the backbone sequence. Mapping assemblers are usually much faster and less memory intensive than de-novo assemblers.
Created in	beta12orEarlier
hasDefinition	Sequence assembly by combining fragments using an existing backbone sequence, typically a reference genome.
hasExactSynonym	Sequence assembly (mapping assembly)
inSubset	http://edamontology.org/bio http://edamontology.org/operations
label	Mapping assembly
prefixIRI	operation_0523
prefLabel	Mapping assembly
seeAlso	https://en.wikipedia.org/wiki/Sequence_assembly#De-novo_vs._mapping_assembly
subClassOf	http://edamontology.org/operation_0310

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Mapping To	Ontology	Source
http://edamontology.org/operation_0523	NGSONTO	SAME_URI
http://edamontology.org/operation_0523	ITO	SAME_URI
http://edamontology.org/operation_0523	ITO	LOOM