EDAM - Bioscientific data analysis ontology - Read mapping - Classes

Last uploaded: February 26, 2021

Preferred Name	Read mapping
Synonyms	Short oligonucleotide alignment Short read alignment Oligonucleotide alignment generation Oligonucleotide mapping Short sequence read mapping Short read mapping Read alignment Oligonucleotide alignment Oligonucleotide alignment construction
Definitions	Align short oligonucleotide sequences (reads) to a larger (genomic) sequence. The purpose of read mapping is to identify the location of sequenced fragments within a reference genome and assumes that there is, in fact, at least local similarity between the fragment and reference sequences.
ID	http://edamontology.org/operation_3198
comment	The purpose of read mapping is to identify the location of sequenced fragments within a reference genome and assumes that there is, in fact, at least local similarity between the fragment and reference sequences.
Created in	1.1
hasDefinition	Align short oligonucleotide sequences (reads) to a larger (genomic) sequence.
hasExactSynonym	Short oligonucleotide alignment Short read alignment Oligonucleotide alignment generation Oligonucleotide mapping Short sequence read mapping Short read mapping Read alignment Oligonucleotide alignment Oligonucleotide alignment construction
inSubset	http://edamontology.org/bio http://edamontology.org/operations
label	Read mapping
prefixIRI	operation_3198
prefLabel	Read mapping
subClassOf	http://edamontology.org/operation_3921 http://edamontology.org/operation_2944

Delete	Subject	Author	Type	Created
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Delete	Mapping To	Ontology	Source
	http://edamontology.org/operation_3198	ITO	SAME_URI
	http://edamontology.org/operation_3198	ITO	LOOM