EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021
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Preferred Name

Genome indexing
Synonyms

Genome indexing (Burrows-Wheeler)

Burrows-Wheeler

Genome indexing (suffix arrays)

Suffix arrays
Definitions

Many sequence alignment tasks involving many or very large sequences rely on a precomputed index of the sequence to accelerate the alignment. The Burrows-Wheeler Transform (BWT) is a permutation of the genome based on a suffix array algorithm. A suffix array consists of the lexicographically sorted list of suffixes of a genome. Generate an index of a genome sequence.
ID

http://edamontology.org/operation_3211
comment

Many sequence alignment tasks involving many or very large sequences rely on a precomputed index of the sequence to accelerate the alignment. The Burrows-Wheeler Transform (BWT) is a permutation of the genome based on a suffix array algorithm. A suffix array consists of the lexicographically sorted list of suffixes of a genome.
Created in

1.1
hasDefinition

Generate an index of a genome sequence.
hasNarrowSynonym

Genome indexing (Burrows-Wheeler)

Burrows-Wheeler

Genome indexing (suffix arrays)

Suffix arrays
inSubset

http://edamontology.org/bio

http://edamontology.org/operations
label

Genome indexing
prefixIRI

operation_3211
prefLabel

Genome indexing
subClassOf

http://edamontology.org/operation_3918

http://edamontology.org/operation_0227
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