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EDAM - The data analysis and management ontology
Last uploaded:
February 26, 2021
| Acronym | EDAM |
| Visibility | Public |
| Description | EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, the structure of EDAM is relatively simple, divided into 4 main sections: Topic, Operation, Data (incl. Identifier), and Format. EDAM is particularly suitable for semantic annotations and categorisation of diverse resources related to data analysis and management: e.g. tools, workflows, learning materials, or standards. EDAM is also useful in data management itself, for recording provenance metadata of processed data. As a reference article (citation), please use https://doi.org/10.7490/f1000research.1118900.1 |
| Status | Production |
| Format | OWL |
| Contact | GitHub repository, https://github.com/edamontology/edamontology Hervé Ménager, herve.menager@pasteur.fr Matúš Kalaš, drmatuskalas@duck.com |
| Categories | All Organisms, Biomedical Resources, Genomic and Proteomic, Other, Vocabularies |
| Version | Released | Uploaded | Downloads |
|---|---|---|---|
| 1.25-20240924T0027Z-unstable(1.26) (Parsed, Indexed, Metrics, Annotator) | 09/24/2024 | 02/26/2021 | OWL | CSV | RDF/XML | Diff |
| 1.25 (Archived) | 06/18/2020 | 06/18/2020 | OWL | Diff |
| 1.24 (Archived) | 01/16/2020 | 01/16/2020 | OWL |
| 1.24-PRERELEASE (Archived) | 01/14/2020 | 01/14/2020 | OWL |
| 1.23 (Archived) | 07/16/2019 | 07/16/2019 | OWL | Diff |
| 1.22 (Archived) | 05/14/2019 | 05/12/2019 | OWL | Diff |
| 1.21 (Archived) | 07/31/2018 | 07/30/2018 | OWL | Diff |
| 1.20 (Archived) | 12/31/2017 | 12/15/2017 | OWL | Diff |
| 1.19 (Archived) | 10/31/2017 | 10/30/2017 | OWL | Diff |
| 1.18 (Archived) | 07/04/2017 | 07/06/2017 | OWL | Diff |
| 1.17 (Archived) | 04/27/2017 | 04/28/2017 | OWL | Diff |
| 1.16 (Archived) | 10/31/2016 | 11/01/2016 | OWL | Diff |
| 1.15 (Archived) | 05/16/2016 | 05/16/2016 | OWL | Diff |
| 1.14 (Archived) | 02/26/2016 | 02/26/2016 | OWL | Diff |
| 1.13 (Archived) | 02/09/2016 | 02/08/2016 | OWL | Diff |
| 1.12 (Archived) | 12/18/2015 | 01/06/2016 | OWL | Diff |
| 1.11 (Archived) | 07/09/2015 | 07/09/2015 | OWL | Diff |
| 1.10 (Archived) | 07/03/2015 | 07/03/2015 | OWL | Diff |
| 1.10 (Archived) | 07/03/2015 | 07/03/2015 | OWL | Diff |
| 1.9 (Archived) | 02/02/2015 | 02/02/2015 | OWL | Diff |
| 1.8 (Archived) | 12/16/2014 | 12/16/2014 | OWL | Diff |
| 1.7 (Archived) | 12/08/2014 | 12/08/2014 | OWL | Diff |
| 1.6 (Archived) | 11/18/2014 | 11/18/2014 | OWL | Diff |
| 1.5 (Archived) | 11/14/2014 | 11/14/2014 | OWL | Diff |
| 1.4 (Archived) | 10/06/2014 | 09/26/2014 | OWL | Diff |
| 1.3 (Archived) | 02/20/2014 | 02/18/2014 | OWL | Diff |
| 1.2 (Archived) | 12/14/2012 | 12/14/2012 | OWL | Diff |
| 1.1 (Archived) | 07/05/2012 | 12/10/2012 | OBO | Diff |
| 1 (Archived) | 01/13/2012 | 01/20/2012 | OBO |
| Beta13 (Archived) | 12/05/2011 | 12/05/2011 | OBO |
| beta12 (Archived) | 06/17/2011 | 06/17/2011 | OBO |
| beta11 (Archived) | 01/22/2011 | 01/22/2011 | OBO |
| beta10 (Archived) | 07/10/2010 | 12/01/2010 | OBO |
| beta09 (Archived) | 07/10/2010 | 10/07/2010 | OBO |
| beta08 (Archived) | 05/28/2010 | 08/18/2010 | OBO |
| beta07 (Archived) | 05/28/2010 | 05/28/2010 | OBO |
| beta05 (Archived) | 06/11/2010 | 05/14/2010 | OBO |
| more... | |||
- Biomedical Topics Ontology
- An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM.
- EDAM Topics Subset
- An ontology of bioinformatics, biological and biomedical topics (EDAM Topics)
| Classes | 3,511 |
| Individuals | 3 |
| Properties | 13 |
| Maximum depth | 8 |
| Maximum number of children | 1,119 |
| Average number of children | 7 |
| Classes with a single child | 163 |
| Classes with more than 25 children | 15 |
| Classes with no definition | 1 |
Jump to:
| Id | http://edamontology.org/operation_3216
http://edamontology.org/operation_3216
|
|---|---|
| Preferred Name | Scaffolding |
| Definitions |
Scaffold may be positioned along a chromosome physical map to create a "golden path".
Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length. The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.
|
| Synonyms |
Scaffold generation
Scaffold construction
|
| Type | http://www.w3.org/2002/07/owl#Class |
All Properties
| label | Scaffolding
|
|---|---|
| comment | Scaffold may be positioned along a chromosome physical map to create a "golden path".
|
| prefLabel | Scaffolding
|
| inSubset | |
| prefixIRI | operation_3216
|
| subClassOf | |
| hasDefinition | Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length. The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.
|
| type | |
| hasExactSynonym |
Scaffold generation
Scaffold construction
|
| Created in | 1.1
|
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