EDAM - Bioscientific data analysis ontology - Read pre-processing - Classes

Last uploaded: February 26, 2021

Preferred Name	Read pre-processing
Synonyms	Sequence read pre-processing
Definitions	Pre-process sequence reads to ensure (or improve) quality and reliability. For example process paired end reads to trim low quality ends remove short sequences, identify sequence inserts, detect chimeric reads, or remove low quality sequences including vector, adaptor, low complexity and contaminant sequences. Sequences might come from genomic DNA library, EST libraries, SSH library and so on.
ID	http://edamontology.org/operation_3219
comment	For example process paired end reads to trim low quality ends remove short sequences, identify sequence inserts, detect chimeric reads, or remove low quality sequences including vector, adaptor, low complexity and contaminant sequences. Sequences might come from genomic DNA library, EST libraries, SSH library and so on.
Created in	1.1
hasDefinition	Pre-process sequence reads to ensure (or improve) quality and reliability.
hasExactSynonym	Sequence read pre-processing
inSubset	http://edamontology.org/bio http://edamontology.org/operations
label	Read pre-processing
prefixIRI	operation_3219
prefLabel	Read pre-processing
subClassOf	http://edamontology.org/operation_3218 http://edamontology.org/operation_3921

Delete	Subject	Author	Type	Created
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Delete	Mapping To	Ontology	Source
	http://edamontology.org/operation_3219	ITO	SAME_URI
	http://edamontology.org/operation_3219	ITO	LOOM