EDAM - Bioscientific data analysis ontology - Sequence composition, complexity and repeats - Classes | NCBO BioPortal

EDAM - Bioscientific data analysis ontology

Last uploaded: February 26, 2021

Details
Visualization
Notes ( 0 )
Class Mappings ( )

Preferred Name	Sequence composition, complexity and repeats
Synonyms	Repeat sequences Low complexity sequences Sequence composition Sequence complexity Protein sequence repeats Nucleic acid repeats Protein repeats Sequence repeats
Definitions	The archival, processing and analysis of the basic character composition of molecular sequences, for example character or word frequency, ambiguity, complexity, particularly regions of low complexity, and repeats or the repetitive nature of molecular sequences. This includes short repetitive subsequences (repeat sequences) in a protein sequence. This includes repetitive elements within a nucleic acid sequence, e.g. long terminal repeats (LTRs); sequences (typically retroviral) directly repeated at both ends of a sequence and other types of repeating unit.
ID	http://edamontology.org/topic_0157
comment	This includes short repetitive subsequences (repeat sequences) in a protein sequence. This includes repetitive elements within a nucleic acid sequence, e.g. long terminal repeats (LTRs); sequences (typically retroviral) directly repeated at both ends of a sequence and other types of repeating unit.
Created in	beta12orEarlier
hasDefinition	The archival, processing and analysis of the basic character composition of molecular sequences, for example character or word frequency, ambiguity, complexity, particularly regions of low complexity, and repeats or the repetitive nature of molecular sequences.
hasHumanReadableId	Sequence_composition_complexity_and_repeats
hasNarrowSynonym	Repeat sequences Low complexity sequences Sequence composition Sequence complexity Protein sequence repeats Nucleic acid repeats Protein repeats Sequence repeats
inSubset	http://edamontology.org/bio http://edamontology.org/topics
isdebtag	true
label	Sequence composition, complexity and repeats
prefixIRI	topic_0157
prefLabel	Sequence composition, complexity and repeats
subClassOf	http://edamontology.org/topic_0080

Subscribe to notes emails

Delete	Subject	Author	Type	Created
No notes to display

Delete	Mapping To	Ontology	Source
	http://edamontology.org/topic_0157	BERO	SAME_URI
	http://edamontology.org/topic_0157	ITO	SAME_URI
	http://edamontology.org/topic_0157	BMT	SAME_URI
	http://edamontology.org/topic_0157	BERO	LOOM
	http://edamontology.org/topic_0157	ITO	LOOM
	http://edamontology.org/topic_0157	BMT	LOOM